Wall clock time and date at job start Tue Mar 31 2020 20:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00190 * 2 1 4 4 H 1.09000 * 109.46940 * 30.00003 * 3 2 1 5 5 C 1.52999 * 109.47230 * 269.99928 * 3 2 1 6 6 C 1.52996 * 109.47202 * 149.99478 * 3 2 1 7 7 N 1.46897 * 109.47490 * 300.00372 * 6 3 2 8 8 C 1.46893 * 111.00171 * 293.95317 * 7 6 3 9 9 C 1.46898 * 111.00238 * 169.99571 * 7 6 3 10 10 C 1.50700 * 109.47297 * 189.99854 * 9 7 6 11 11 O 1.21291 * 119.99922 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00078 * 180.02562 * 10 9 7 13 13 C 1.39938 * 120.00194 * 185.74301 * 12 10 9 14 14 C 1.38684 * 120.11224 * 24.75523 * 13 12 10 15 15 C 1.38220 * 120.01894 * 180.02562 * 14 13 12 16 16 C 1.38390 * 120.24981 * 359.95655 * 15 14 13 17 17 C 1.38085 * 120.23045 * 0.02562 * 16 15 14 18 18 C 1.38994 * 119.97692 * 0.02643 * 17 16 15 19 19 S 1.76195 * 120.12502 * 179.97438 * 18 17 16 20 20 C 1.76203 * 100.00020 * 5.61963 * 19 18 17 21 21 H 1.07993 * 119.99677 * 354.96047 * 20 19 18 22 22 C 1.38687 * 119.99706 * 174.96929 * 20 19 18 23 23 N 1.31646 * 120.00649 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99638 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46985 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47108 * 119.99641 * 24 22 20 27 27 H 1.48500 * 109.46885 * 239.99664 * 24 22 20 28 28 H 1.09000 * 109.47620 * 299.99966 * 1 2 3 29 29 H 1.09002 * 109.46734 * 60.00141 * 1 2 3 30 30 H 1.09002 * 109.47468 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46775 * 179.97438 * 5 3 2 32 32 H 1.09000 * 109.47221 * 299.99903 * 5 3 2 33 33 H 1.08996 * 109.46983 * 60.00193 * 5 3 2 34 34 H 1.09001 * 109.47385 * 180.02562 * 6 3 2 35 35 H 1.09000 * 109.46744 * 60.00406 * 6 3 2 36 36 H 1.09007 * 109.47111 * 296.04758 * 8 7 6 37 37 H 1.08999 * 109.47382 * 56.04163 * 8 7 6 38 38 H 1.08997 * 109.47542 * 176.04381 * 8 7 6 39 39 H 1.08998 * 109.47032 * 70.00128 * 9 7 6 40 40 H 1.08997 * 109.47446 * 310.00225 * 9 7 6 41 41 H 0.97001 * 119.99879 * 5.73832 * 12 10 9 42 42 H 1.07998 * 119.98998 * 0.02562 * 14 13 12 43 43 H 1.08000 * 119.87651 * 179.97438 * 15 14 13 44 44 H 1.08008 * 119.88836 * 179.74074 * 16 15 14 45 45 H 1.08001 * 120.01104 * 179.97438 * 17 16 15 46 46 H 0.96997 * 120.00445 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3588 1.2632 0.7213 7 7 3.1596 0.8158 2.1063 8 6 2.3848 1.8015 2.8716 9 6 4.4454 0.5353 2.7590 10 6 4.1999 -0.1485 4.0793 11 8 3.0654 -0.3797 4.4408 12 7 5.2409 -0.5029 4.8585 13 6 5.0213 -1.2435 6.0254 14 6 3.8919 -2.0400 6.1417 15 6 3.6767 -2.7703 7.2953 16 6 4.5852 -2.7114 8.3375 17 6 5.7133 -1.9220 8.2325 18 6 5.9387 -1.1828 7.0772 19 16 7.3765 -0.1738 6.9394 20 6 8.2055 -0.6172 8.4296 21 1 7.7261 -1.2756 9.1388 22 6 9.4736 -0.1206 8.6918 23 7 10.0582 0.6817 7.8272 24 14 10.3522 -0.5901 10.2721 25 1 9.4867 -1.4961 11.0692 26 1 11.6246 -1.2820 9.9442 27 1 10.6434 0.6349 11.0593 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 2.6607 2.7673 -1.4424 32 1 2.8830 1.0774 -1.9563 33 1 1.2569 1.8014 -1.9563 34 1 3.8020 2.2590 0.7218 35 1 4.0241 0.5693 0.2075 36 1 2.9499 2.7308 2.9443 37 1 1.4377 1.9909 2.3663 38 1 2.1917 1.4145 3.8721 39 1 4.9788 1.4707 2.9280 40 1 5.0436 -0.1137 2.1195 41 1 6.1424 -0.2448 4.6104 42 1 3.1805 -2.0897 5.3307 43 1 2.7962 -3.3895 7.3836 44 1 4.4091 -3.2812 9.2380 45 1 6.4199 -1.8783 9.0482 46 1 10.9452 1.0288 8.0104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285772702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:04 Heat of formation + Delta-G solvation = -59.700594 kcal Electronic energy + Delta-G solvation = -26585.604849 eV Core-core repulsion = 22794.285033 eV Total energy + Delta-G solvation = -3791.319816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53694 -39.80008 -39.09900 -37.30535 -35.71600 -34.72095 -32.93082 -31.87835 -31.00614 -28.84013 -28.12144 -27.85245 -27.25286 -24.61637 -23.84962 -23.05238 -21.67622 -21.19673 -20.12352 -18.41171 -18.18532 -17.71512 -17.57200 -17.03703 -16.90915 -16.38660 -16.31782 -15.81985 -15.63604 -15.45400 -15.37348 -14.92649 -14.65592 -14.54706 -14.12574 -14.00884 -13.70889 -13.38459 -13.36060 -13.07204 -12.99624 -12.88265 -12.84682 -12.81540 -12.73427 -12.49142 -12.24239 -12.08666 -11.63118 -11.43953 -11.40681 -11.35179 -10.66580 -10.60413 -10.42183 -10.35364 -9.28604 -9.12451 -8.49277 -8.33207 -6.23117 0.39186 0.54073 1.27298 1.37592 1.46118 1.59512 1.65226 2.00369 2.17958 2.86437 2.90723 2.98620 3.01249 3.15825 3.67127 3.89819 4.09174 4.16784 4.18589 4.26829 4.31049 4.36127 4.45227 4.49110 4.52582 4.52917 4.61610 4.66775 4.68491 4.71026 4.78573 4.83971 4.92599 5.03112 5.05271 5.13447 5.30808 5.33199 5.44741 5.50421 5.66011 5.73254 5.88600 6.06130 6.13513 6.22829 6.43863 6.49569 6.96500 7.15330 8.59768 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018292 B = 0.002472 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.328951 B =11325.278059 C =12599.888443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.085 3.915 4 H 0.063 0.937 5 C -0.169 4.169 6 C 0.056 3.944 7 N -0.532 5.532 8 C 0.021 3.979 9 C 0.043 3.957 10 C 0.511 3.489 11 O -0.536 6.536 12 N -0.660 5.660 13 C 0.130 3.870 14 C -0.123 4.123 15 C -0.129 4.129 16 C -0.118 4.118 17 C -0.142 4.142 18 C -0.130 4.130 19 S -0.013 6.013 20 C -0.562 4.562 21 H 0.096 0.904 22 C 0.026 3.974 23 N -0.902 5.902 24 Si 0.992 3.008 25 H -0.261 1.261 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.037 0.963 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.415 0.585 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.125 0.875 46 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.997 1.462 -14.805 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C 0.027 3.973 4 H 0.081 0.919 5 C -0.227 4.227 6 C -0.072 4.072 7 N -0.257 5.257 8 C -0.127 4.127 9 C -0.088 4.088 10 C 0.300 3.700 11 O -0.412 6.412 12 N -0.305 5.305 13 C 0.028 3.972 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.139 4.139 17 C -0.168 4.168 18 C -0.246 4.246 19 S 0.237 5.763 20 C -0.709 4.709 21 H 0.114 0.886 22 C -0.180 4.180 23 N -0.537 5.537 24 Si 0.814 3.186 25 H -0.185 1.185 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.103 0.897 40 H 0.146 0.854 41 H 0.252 0.748 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.143 0.857 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.257 1.752 -15.554 21.172 hybrid contribution 1.075 0.105 1.869 2.159 sum -13.182 1.857 -13.685 19.091 Atomic orbital electron populations 1.22813 0.80689 1.03033 1.00003 1.87956 1.20239 1.28132 1.95078 1.22249 0.94251 0.84833 0.95923 0.91948 1.22220 1.02858 1.02261 0.95319 1.22394 0.97126 1.00511 0.87125 1.61510 1.16162 1.45678 1.02317 1.22514 0.98244 0.92681 0.99270 1.21997 0.93078 1.01570 0.92137 1.21236 0.84020 0.78409 0.86368 1.90594 1.23024 1.54182 1.73405 1.43553 1.11450 1.53360 1.22175 1.17401 0.96788 0.96497 0.86499 1.21295 0.96950 0.96208 1.00065 1.21224 1.00319 1.00478 0.93109 1.21268 0.93599 0.99083 0.99916 1.21370 0.99362 0.98816 0.97218 1.22397 1.01654 1.04098 0.96492 1.82891 1.12890 1.49394 1.31083 1.23642 1.04815 1.36026 1.06435 0.88602 1.26007 0.96726 0.93901 1.01347 1.70097 1.15809 1.30979 1.36797 0.84991 0.78039 0.78520 0.77082 1.18469 1.19589 1.19733 0.94422 0.93043 0.89632 0.90123 0.91861 0.91841 0.91427 0.89424 0.94908 0.90774 0.92068 0.89714 0.85416 0.74762 0.84310 0.83376 0.83798 0.85748 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.82 113.37 1.23 1.73 16 2 O -0.39 -8.56 10.21 -148.98 -1.52 -10.08 16 3 C 0.09 1.40 2.60 30.59 0.08 1.48 16 4 H 0.06 0.97 6.12 -2.39 -0.01 0.96 16 5 C -0.17 -1.98 9.53 71.98 0.69 -1.29 16 6 C 0.06 0.94 4.65 86.30 0.40 1.34 16 7 N -0.53 -12.21 4.37 -927.09 -4.05 -16.26 16 8 C 0.02 0.47 9.01 127.69 1.15 1.63 16 9 C 0.04 0.97 5.45 85.56 0.47 1.44 16 10 C 0.51 16.07 7.36 87.66 0.64 16.71 16 11 O -0.54 -19.77 11.48 -3.06 -0.04 -19.81 16 12 N -0.66 -22.74 5.17 -303.00 -1.57 -24.30 16 13 C 0.13 5.22 6.44 38.31 0.25 5.46 16 14 C -0.12 -4.57 8.71 22.37 0.19 -4.38 16 15 C -0.13 -4.23 10.04 22.30 0.22 -4.01 16 16 C -0.12 -4.08 10.03 22.27 0.22 -3.85 16 17 C -0.14 -6.01 9.26 22.41 0.21 -5.80 16 18 C -0.13 -5.80 6.12 22.81 0.14 -5.66 16 19 S -0.01 -0.67 20.37 -56.49 -1.15 -1.82 16 20 C -0.56 -30.41 9.08 67.93 0.62 -29.79 16 21 H 0.10 5.01 4.81 -2.91 -0.01 5.00 16 22 C 0.03 1.40 5.49 84.83 0.47 1.87 16 23 N -0.90 -50.41 13.22 21.63 0.29 -50.13 16 24 Si 0.99 41.59 29.55 68.60 2.03 43.62 16 25 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H 0.04 0.62 8.09 -2.39 -0.02 0.60 16 29 H 0.05 0.64 7.87 -2.39 -0.02 0.62 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 0.69 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.69 7.87 -2.39 -0.02 0.67 16 34 H 0.07 0.89 8.12 -2.39 -0.02 0.87 16 35 H 0.09 1.43 7.93 -2.39 -0.02 1.41 16 36 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.07 1.49 6.30 -2.39 -0.02 1.48 16 38 H 0.06 1.79 5.88 -2.39 -0.01 1.78 16 39 H 0.09 1.63 8.12 -2.39 -0.02 1.61 16 40 H 0.13 2.36 7.93 -2.39 -0.02 2.34 16 41 H 0.41 13.48 7.65 -92.71 -0.71 12.77 16 42 H 0.14 5.16 5.79 -2.91 -0.02 5.14 16 43 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 45 H 0.13 5.52 4.93 -2.91 -0.01 5.51 16 46 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -68.29 384.69 1.26 -67.03 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.29 Total: 34.89 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 6.97 Total: -23.13 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -5.33 Total: -90.69 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -1.56 Total: -29.89 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -1.15 Total: -1.82 kcal Total: -68.29 1.26 -67.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285772702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.325 kcal (2) G-P(sol) polarization free energy of solvation -68.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds