Wall clock time and date at job start Tue Mar 31 2020 20:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 N 1.46505 * 109.47212 * 64.99775 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21353 * 120.00717 * 0.02562 * 6 5 4 8 8 C 1.49457 * 119.99493 * 180.02562 * 6 5 4 9 9 O 1.21347 * 120.00233 * 0.02562 * 8 6 5 10 10 N 1.34780 * 119.99667 * 179.97438 * 8 6 5 11 11 C 1.46505 * 119.99795 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46784 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.46632 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47170 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99528 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00568 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99342 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00473 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46946 * 89.99681 * 18 16 14 20 20 H 1.48500 * 109.47049 * 210.00247 * 18 16 14 21 21 H 1.48500 * 109.46808 * 330.00190 * 18 16 14 22 22 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 23 23 C 1.50691 * 109.47514 * 295.00358 * 22 2 1 24 24 C 1.33396 * 125.20785 * 89.71617 * 23 22 2 25 25 C 1.38421 * 114.92374 * 179.86105 * 24 23 22 26 26 C 1.33384 * 114.92095 * 0.43266 * 25 24 23 27 27 S 1.75882 * 109.59350 * 359.76986 * 26 25 24 28 28 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 29 29 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 31 31 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 32 32 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 33 33 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 34 34 H 0.96995 * 120.00011 * 0.02562 * 10 8 6 35 35 H 1.09001 * 109.46919 * 300.00467 * 11 10 8 36 36 H 1.08992 * 109.47069 * 60.00263 * 11 10 8 37 37 H 1.08992 * 109.46876 * 299.99831 * 12 11 10 38 38 H 1.08992 * 109.47199 * 60.00552 * 12 11 10 39 39 H 1.09001 * 109.46741 * 299.99831 * 13 12 11 40 40 H 1.09002 * 109.47398 * 59.99728 * 13 12 11 41 41 H 0.97008 * 119.99500 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.46810 * 55.00222 * 22 2 1 43 43 H 1.08998 * 109.47247 * 175.00091 * 22 2 1 44 44 H 1.08002 * 122.53371 * 0.02562 * 24 23 22 45 45 H 1.08003 * 122.53757 * 180.20337 * 25 24 23 46 46 H 1.08000 * 125.20364 * 179.79352 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 1.9965 -0.4132 -3.6658 7 8 2.6269 -1.4439 -3.7792 8 6 1.6016 0.3589 -4.8830 9 8 0.9716 1.3898 -4.7697 10 7 1.9461 -0.0893 -6.1065 11 6 1.5585 0.6672 -7.2997 12 6 2.0691 -0.0538 -8.5489 13 6 1.6649 0.7367 -9.7950 14 6 2.1672 0.0263 -11.0254 15 1 2.7200 -0.8965 -10.9283 16 6 1.9213 0.5542 -12.2751 17 7 1.2478 1.6777 -12.3933 18 14 2.5446 -0.3260 -13.8002 19 1 1.5138 -1.2837 -14.2750 20 1 2.8244 0.6691 -14.8664 21 1 3.7911 -1.0631 -13.4715 22 6 2.0400 -0.7211 1.2493 23 6 1.6413 0.0572 2.4765 24 6 0.5041 -0.1055 3.1546 25 6 0.3568 0.7227 4.2539 26 6 1.3702 1.5643 4.4633 27 16 2.6007 1.3244 3.2296 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6055 -1.7198 -1.2951 32 1 3.1264 -0.7994 -1.2055 33 1 1.1489 0.8593 -2.3517 34 1 2.4500 -0.9132 -6.1971 35 1 0.4721 0.7447 -7.3438 36 1 1.9923 1.6660 -7.2535 37 1 3.1554 -0.1315 -8.5049 38 1 1.6349 -1.0524 -8.5950 39 1 0.5786 0.8148 -9.8390 40 1 2.0994 1.7352 -9.7486 41 1 1.0751 2.0493 -13.2725 42 1 1.6054 -1.7197 1.2952 43 1 3.1263 -0.7993 1.2057 44 1 -0.2437 -0.8306 2.8691 45 1 -0.5144 0.6925 4.8914 46 1 1.4268 2.2829 5.2676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286835151.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:07 Heat of formation + Delta-G solvation = -87.359766 kcal Electronic energy + Delta-G solvation = -25019.445999 eV Core-core repulsion = 21226.926791 eV Total energy + Delta-G solvation = -3792.519207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74158 -39.86633 -39.13861 -37.58050 -37.07327 -35.32323 -34.60180 -33.03532 -30.98586 -29.08437 -28.11147 -27.36453 -25.69151 -24.26486 -23.49203 -22.36664 -21.69121 -21.11694 -20.09928 -19.46159 -18.51455 -18.13694 -17.77157 -17.28569 -16.76261 -16.60168 -16.36276 -16.25573 -16.06782 -15.69585 -15.14619 -14.95046 -14.79646 -14.27060 -13.99906 -13.89031 -13.77559 -13.50850 -13.50623 -13.43705 -13.15276 -12.87831 -12.75642 -12.69437 -12.54330 -12.39951 -12.15668 -11.87909 -11.82470 -11.69671 -11.55510 -11.52221 -11.23266 -10.72266 -10.54199 -10.35924 -10.26346 -9.50412 -9.36359 -8.18984 -6.29894 0.12059 0.30709 0.76573 1.14529 1.29312 1.42775 1.43474 1.54623 1.89103 2.10616 2.42201 2.63474 3.15092 3.41120 3.55576 3.84997 4.00626 4.08639 4.14058 4.18482 4.28999 4.43673 4.52836 4.53803 4.67720 4.71749 4.74504 4.86543 4.87428 4.91894 4.93663 5.02893 5.10728 5.15360 5.23034 5.27289 5.28245 5.38749 5.44617 5.52051 5.65000 5.71192 5.84880 5.88554 6.23330 6.32028 6.69591 6.86992 6.90748 7.39581 8.92851 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.040493 B = 0.001363 C = 0.001351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.305770 B =20543.086644 C =20725.275658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.079 0.921 4 C 0.121 3.879 5 N -0.687 5.687 6 C 0.514 3.486 7 O -0.540 6.540 8 C 0.500 3.500 9 O -0.549 6.549 10 N -0.687 5.687 11 C 0.127 3.873 12 C -0.106 4.106 13 C 0.024 3.976 14 C -0.543 4.543 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.262 1.262 22 C -0.040 4.040 23 C -0.173 4.173 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.223 4.223 27 S 0.071 5.929 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.418 0.582 34 H 0.419 0.581 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.067 0.933 39 H -0.004 1.004 40 H -0.004 1.004 41 H 0.263 0.737 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -4.475 37.364 37.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.002 4.002 5 N -0.340 5.340 6 C 0.294 3.706 7 O -0.417 6.417 8 C 0.281 3.719 9 O -0.427 6.427 10 N -0.339 5.339 11 C 0.004 3.996 12 C -0.144 4.144 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.187 1.187 22 C -0.080 4.080 23 C -0.290 4.290 24 C -0.174 4.174 25 C -0.173 4.173 26 C -0.358 4.358 27 S 0.334 5.666 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.256 0.744 34 H 0.257 0.743 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.170 0.830 45 H 0.172 0.828 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.374 -3.690 36.969 37.178 hybrid contribution -1.271 -0.459 -0.708 1.525 sum 0.104 -4.149 36.262 36.498 Atomic orbital electron populations 1.21939 0.93898 1.02852 1.02242 1.21281 0.97214 1.00110 0.92178 0.90260 1.21687 1.00834 0.95606 0.82044 1.45775 1.55469 1.28150 1.04629 1.19889 0.80547 0.85131 0.84999 1.90763 1.39770 1.24317 1.86870 1.20387 0.80670 0.85537 0.85330 1.90750 1.40236 1.24754 1.86973 1.45886 1.55091 1.27969 1.04930 1.21478 1.00061 0.95243 0.82828 1.21642 1.00996 0.99395 0.92369 1.18938 0.95352 0.94844 0.92198 1.21684 1.35273 1.08952 0.92203 0.91775 1.25967 0.95349 0.95720 1.02781 1.70104 1.41549 1.21053 1.24589 0.85449 0.79037 0.78186 0.78381 1.19858 1.20952 1.18651 1.20132 1.01974 0.98176 0.87700 1.24546 0.98889 1.02769 1.02801 1.20382 0.98173 1.02535 0.96328 1.20467 1.00558 0.96935 0.99316 1.25873 0.98390 1.06808 1.04717 1.84486 1.23565 1.35032 1.23522 0.92925 0.91548 0.91626 0.90152 0.90486 0.74431 0.74324 0.91727 0.91754 0.91467 0.91420 0.98518 0.98519 0.92816 0.88133 0.89770 0.83037 0.82837 0.80616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.75 71.98 0.63 -0.81 16 2 C -0.09 -0.82 2.41 -10.79 -0.03 -0.85 16 3 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 4 C 0.12 1.53 5.06 86.38 0.44 1.97 16 5 N -0.69 -12.15 5.28 -464.40 -2.45 -14.60 16 6 C 0.51 12.52 7.89 87.27 0.69 13.20 16 7 O -0.54 -15.04 16.48 -3.26 -0.05 -15.09 16 8 C 0.50 14.36 7.89 87.27 0.69 15.05 16 9 O -0.55 -18.15 16.48 -3.24 -0.05 -18.20 16 10 N -0.69 -19.86 5.55 -464.39 -2.58 -22.43 16 11 C 0.13 4.32 5.67 86.38 0.49 4.81 16 12 C -0.11 -4.07 5.27 30.60 0.16 -3.90 16 13 C 0.02 1.25 4.97 29.85 0.15 1.40 16 14 C -0.54 -30.23 9.11 25.60 0.23 -30.00 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 18 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 22 C -0.04 -0.32 5.18 29.84 0.15 -0.17 16 23 C -0.17 -1.82 5.27 24.59 0.13 -1.69 16 24 C -0.14 -1.43 8.58 21.22 0.18 -1.25 16 25 C -0.14 -1.41 10.18 21.21 0.22 -1.19 16 26 C -0.22 -2.32 11.23 66.72 0.75 -1.57 16 27 S 0.07 0.84 23.33 -56.49 -1.32 -0.48 16 28 H 0.05 0.58 7.18 -2.39 -0.02 0.56 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.64 6.38 -2.39 -0.02 0.62 16 31 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.42 6.79 7.13 -92.71 -0.66 6.13 16 34 H 0.42 10.85 7.94 -92.71 -0.74 10.11 16 35 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 42 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 45 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 46 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -68.80 400.76 0.80 -68.00 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.41 Total: 17.68 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 5.35 Total: -4.56 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -4.74 Total: -93.15 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.11 Total: -33.29 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -1.32 Total: -0.48 kcal Total: -68.80 0.80 -68.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286835151.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.356 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds