Wall clock time and date at job start Tue Mar 31 2020 20:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47816 * 119.99685 * 2 1 4 4 C 1.39537 * 120.13865 * 180.02562 * 3 2 1 5 5 C 1.37978 * 119.85395 * 180.02562 * 4 3 2 6 6 C 1.38336 * 120.14221 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.85948 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46673 * 90.00022 * 7 6 5 9 9 N 1.46506 * 109.46682 * 180.02562 * 8 7 6 10 10 S 1.65598 * 120.00181 * 165.00196 * 9 8 7 11 11 O 1.42102 * 106.39860 * 311.45789 * 10 9 8 12 12 O 1.42091 * 106.40576 * 178.53560 * 10 9 8 13 13 N 1.65598 * 107.21635 * 64.99320 * 10 9 8 14 14 C 1.46502 * 120.00561 * 269.99698 * 13 10 9 15 15 C 1.46509 * 119.99835 * 90.00560 * 13 10 9 16 16 H 1.08999 * 109.47022 * 359.97438 * 15 13 10 17 17 C 1.52997 * 109.47062 * 119.99654 * 15 13 10 18 18 C 1.50692 * 109.46787 * 239.99589 * 15 13 10 19 19 H 1.08003 * 120.00316 * 354.36999 * 18 15 13 20 20 C 1.37886 * 119.99877 * 174.36792 * 18 15 13 21 21 N 1.31510 * 119.99961 * 156.89610 * 20 18 15 22 22 Si 1.86796 * 119.99750 * 337.17309 * 20 18 15 23 23 H 1.48495 * 109.47179 * 179.72455 * 22 20 18 24 24 H 1.48502 * 109.47231 * 299.72156 * 22 20 18 25 25 H 1.48498 * 109.47554 * 59.72235 * 22 20 18 26 26 C 1.38346 * 120.28831 * 0.24888 * 6 5 4 27 27 C 1.37976 * 120.13804 * 359.45580 * 26 6 5 28 28 H 1.08005 * 119.99409 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00238 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00538 * 180.02562 * 2 1 3 31 31 H 1.08003 * 120.07329 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.92659 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.46640 * 330.00235 * 7 6 5 34 34 H 1.08994 * 109.47410 * 209.99830 * 7 6 5 35 35 H 1.08997 * 109.47413 * 60.00687 * 8 7 6 36 36 H 1.09000 * 109.47173 * 299.99593 * 8 7 6 37 37 H 0.96998 * 119.99747 * 344.99313 * 9 8 7 38 38 H 1.08992 * 109.47772 * 270.00982 * 14 13 10 39 39 H 1.09003 * 109.46297 * 30.00408 * 14 13 10 40 40 H 1.08994 * 109.47613 * 150.00053 * 14 13 10 41 41 H 1.09002 * 109.47176 * 173.30103 * 17 15 13 42 42 H 1.09005 * 109.47375 * 293.29940 * 17 15 13 43 43 H 1.09000 * 109.47483 * 53.29843 * 17 15 13 44 44 H 0.97006 * 120.00339 * 355.20022 * 21 20 18 45 45 H 1.07997 * 119.93094 * 179.72480 * 26 6 5 46 46 H 1.08003 * 120.06947 * 180.24695 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 3.4600 1.2836 -0.0005 5 6 4.1439 2.4820 0.0000 6 6 3.4492 3.6783 0.0016 7 6 4.2026 4.9835 0.0028 8 6 4.4569 5.4267 -1.4394 9 7 5.1899 6.6952 -1.4383 10 16 5.9248 7.2282 -2.8232 11 8 6.6673 6.1286 -3.3321 12 8 6.5118 8.4833 -2.5086 13 7 4.7282 7.5348 -3.9262 14 6 4.2779 6.4752 -4.8322 15 6 4.1200 8.8658 -3.9961 16 1 4.5799 9.5150 -3.2511 17 6 4.3395 9.4542 -5.3912 18 6 2.6419 8.7575 -3.7235 19 1 2.1836 7.7863 -3.6088 20 6 1.8744 9.8984 -3.6204 21 7 0.5786 9.8410 -3.8371 22 14 2.6767 11.5270 -3.1806 23 1 1.6434 12.5928 -3.1401 24 1 3.3254 11.4157 -1.8495 25 1 3.6989 11.8673 -4.2026 26 6 2.0658 3.6817 0.0079 27 6 1.3700 2.4902 0.0012 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8657 -0.9352 -0.0004 31 1 4.0036 0.3503 -0.0014 32 1 5.2239 2.4860 -0.0008 33 1 5.1552 4.8526 0.5160 34 1 3.6137 5.7425 0.5176 35 1 3.5043 5.5576 -1.9527 36 1 5.0459 4.6677 -1.9543 37 1 5.2446 7.2230 -0.6263 38 1 4.8737 6.4996 -5.7445 39 1 4.3970 5.5068 -4.3462 40 1 3.2279 6.6307 -5.0797 41 1 3.7874 10.3897 -5.4821 42 1 5.4023 9.6434 -5.5427 43 1 3.9853 8.7488 -6.1430 44 1 0.1732 9.0124 -4.1370 45 1 1.5292 4.6190 0.0136 46 1 0.2900 2.4942 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291787639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:24 Heat of formation + Delta-G solvation = -40.254461 kcal Electronic energy + Delta-G solvation = -27324.647157 eV Core-core repulsion = 23534.170589 eV Total energy + Delta-G solvation = -3790.476568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.63511 -36.85499 -36.39193 -36.11831 -35.37443 -34.28867 -32.62594 -31.37200 -30.92729 -29.80770 -27.55856 -25.71489 -24.68715 -23.85414 -22.89543 -21.68166 -20.67145 -19.85013 -18.88195 -17.58871 -17.28133 -16.92969 -16.70129 -16.03115 -15.75078 -15.14714 -14.92506 -14.49260 -14.13138 -13.94024 -13.69809 -13.43394 -13.32129 -13.29050 -13.16238 -12.91899 -12.33344 -12.09147 -12.03739 -11.91729 -11.77820 -11.71876 -11.57464 -11.53689 -11.51106 -11.32714 -11.06872 -10.94528 -10.75922 -10.47738 -10.39802 -10.06920 -9.81944 -9.33669 -9.21267 -9.06586 -8.44543 -8.28048 -8.07325 -6.54821 -4.17173 0.72227 1.15045 1.29133 2.31275 3.36501 3.37556 3.43647 3.58549 3.74573 4.02431 4.43066 4.50077 4.58696 4.72371 4.83213 4.87853 4.89054 5.03846 5.10643 5.15308 5.29112 5.32044 5.45711 5.47393 5.56311 5.71635 5.84344 5.87368 5.96447 6.05470 6.10619 6.11090 6.14238 6.19435 6.37701 6.39928 6.48124 6.51736 6.57558 6.59007 6.67257 6.84979 6.97350 7.18897 7.31189 7.51057 7.95014 8.28496 8.81418 9.48105 10.80281 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.003265 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.662426 B = 8574.545120 C = 9809.050713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.116 4.116 3 C -0.068 4.068 4 C -0.108 4.108 5 C -0.114 4.114 6 C -0.077 4.077 7 C -0.088 4.088 8 C 0.128 3.872 9 N -1.128 6.128 10 S 2.784 3.216 11 O -0.995 6.995 12 O -0.984 6.984 13 N -0.985 5.985 14 C 0.106 3.894 15 C 0.247 3.753 16 H 0.047 0.953 17 C -0.153 4.153 18 C -0.616 4.616 19 H 0.066 0.934 20 C 0.043 3.957 21 N -0.893 5.893 22 Si 1.024 2.976 23 H -0.283 1.283 24 H -0.279 1.279 25 H -0.273 1.273 26 C -0.109 4.109 27 C -0.111 4.111 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.413 0.587 38 H 0.044 0.956 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.049 0.951 44 H 0.270 0.730 45 H 0.127 0.873 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.310 -15.923 7.818 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.134 4.134 3 C -0.068 4.068 4 C -0.126 4.126 5 C -0.132 4.132 6 C -0.078 4.078 7 C -0.127 4.127 8 C 0.002 3.998 9 N -0.887 5.887 10 S 2.792 3.208 11 O -0.979 6.979 12 O -0.968 6.968 13 N -0.826 5.826 14 C -0.040 4.040 15 C 0.142 3.858 16 H 0.064 0.936 17 C -0.213 4.213 18 C -0.654 4.654 19 H 0.084 0.916 20 C -0.164 4.164 21 N -0.525 5.525 22 Si 0.851 3.149 23 H -0.208 1.208 24 H -0.205 1.205 25 H -0.199 1.199 26 C -0.127 4.127 27 C -0.129 4.129 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.246 0.754 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.145 0.855 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.907 -14.347 7.819 16.800 hybrid contribution -0.238 -1.501 0.050 1.520 sum 3.669 -15.847 7.870 18.070 Atomic orbital electron populations 1.24372 0.95742 1.02296 0.99542 1.21808 0.95222 0.95751 1.00613 1.19109 0.93386 0.93092 1.01244 1.21222 0.93245 0.98044 1.00089 1.21027 0.99998 0.91806 1.00397 1.19849 0.93763 0.94681 0.99465 1.20804 1.00591 0.94363 0.96897 1.21161 0.96821 0.84643 0.97214 1.55978 1.71886 1.31656 1.29154 1.01749 0.73546 0.72673 0.72797 1.93549 1.69382 1.55467 1.79475 1.93580 1.75960 1.42988 1.84312 1.57485 1.56881 1.19454 1.48829 1.21222 1.01843 0.87982 0.92974 1.18947 0.94682 0.78020 0.94142 0.93561 1.22390 0.98362 1.01057 0.99485 1.22134 0.91752 0.95464 1.56090 0.91637 1.25596 0.95175 1.02323 0.93338 1.70861 1.11965 1.29566 1.40113 0.84328 0.75953 0.76673 0.77926 1.20841 1.20528 1.19920 1.21091 0.93664 0.98358 0.99608 1.21297 0.99898 0.91743 0.99938 0.87855 0.87966 0.86555 0.85946 0.85755 0.90213 0.89896 0.91245 0.90784 0.75396 0.93753 0.93070 0.90096 0.92081 0.95446 0.93188 0.92026 0.85471 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 14.15 28.83 0.41 -0.99 16 2 C -0.12 -1.00 9.91 -37.57 -0.37 -1.37 16 3 C -0.07 -0.71 5.87 -105.01 -0.62 -1.32 16 4 C -0.11 -1.07 9.79 -39.19 -0.38 -1.46 16 5 C -0.11 -1.19 9.68 -39.64 -0.38 -1.57 16 6 C -0.08 -0.86 5.14 -104.54 -0.54 -1.40 16 7 C -0.09 -0.97 5.48 -27.88 -0.15 -1.12 16 8 C 0.13 1.73 6.23 -4.04 -0.03 1.71 16 9 N -1.13 -17.12 6.05 -10.61 -0.06 -17.19 16 10 S 2.78 52.40 6.09 -107.50 -0.66 51.75 16 11 O -1.00 -19.71 16.68 -57.17 -0.95 -20.67 16 12 O -0.98 -21.19 16.70 -57.17 -0.95 -22.15 16 13 N -0.98 -19.70 3.12 -115.86 -0.36 -20.06 16 14 C 0.11 1.87 9.15 59.85 0.55 2.41 16 15 C 0.25 5.68 2.22 -69.08 -0.15 5.52 16 16 H 0.05 1.12 5.49 -51.93 -0.29 0.83 16 17 C -0.15 -3.33 9.01 37.16 0.33 -2.99 16 18 C -0.62 -15.79 8.30 -34.44 -0.29 -16.08 16 19 H 0.07 1.77 7.38 -52.48 -0.39 1.38 16 20 C 0.04 1.17 5.20 -17.82 -0.09 1.07 16 21 N -0.89 -25.62 13.70 55.43 0.76 -24.86 16 22 Si 1.02 24.13 26.44 -169.99 -4.49 19.64 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.06 6.12 56.52 0.35 -5.71 16 26 C -0.11 -1.24 9.68 -39.64 -0.38 -1.63 16 27 C -0.11 -1.19 9.40 -39.20 -0.37 -1.56 16 28 H 0.10 0.61 8.06 -52.48 -0.42 0.19 16 29 H 0.10 0.77 6.04 -52.49 -0.32 0.45 16 30 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 31 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 33 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.99 7.75 -51.93 -0.40 0.59 16 37 H 0.41 5.50 8.65 -34.47 -0.30 5.20 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 40 H 0.08 1.49 6.92 -51.93 -0.36 1.14 16 41 H 0.06 1.36 5.44 -51.93 -0.28 1.08 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.05 1.02 7.45 -51.93 -0.39 0.64 16 44 H 0.27 7.68 8.73 -40.82 -0.36 7.33 16 45 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.14 6.17 -52.48 -0.32 0.82 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -31.83 387.01 -10.23 -42.06 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.88 Total: 6.42 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -2.46 Total: -20.77 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.33 Total: -62.11 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.91 Total: -42.82 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -4.49 Total: 19.64 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -0.66 Total: 51.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.83 -10.23 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291787639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.809 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds