Wall clock time and date at job start Tue Mar 31 2020 20:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47816 * 119.99685 * 2 1 4 4 C 1.39537 * 120.13865 * 180.02562 * 3 2 1 5 5 C 1.37978 * 119.85395 * 180.02562 * 4 3 2 6 6 C 1.38336 * 120.14221 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.85948 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46673 * 90.00022 * 7 6 5 9 9 N 1.46506 * 109.46682 * 180.02562 * 8 7 6 10 10 S 1.65598 * 120.00181 * 165.00196 * 9 8 7 11 11 O 1.42102 * 106.39860 * 311.45789 * 10 9 8 12 12 O 1.42091 * 106.40576 * 178.53560 * 10 9 8 13 13 N 1.65598 * 107.21635 * 64.99320 * 10 9 8 14 14 C 1.46502 * 120.00561 * 269.99698 * 13 10 9 15 15 C 1.46509 * 119.99835 * 90.00560 * 13 10 9 16 16 H 1.08999 * 109.47022 * 359.97438 * 15 13 10 17 17 C 1.52997 * 109.47062 * 119.99654 * 15 13 10 18 18 C 1.50692 * 109.46787 * 239.99589 * 15 13 10 19 19 H 1.08003 * 120.00316 * 354.36999 * 18 15 13 20 20 C 1.37886 * 119.99877 * 174.36792 * 18 15 13 21 21 N 1.31510 * 119.99961 * 156.89610 * 20 18 15 22 22 Si 1.86796 * 119.99750 * 337.17309 * 20 18 15 23 23 H 1.48495 * 109.47179 * 179.72455 * 22 20 18 24 24 H 1.48502 * 109.47231 * 299.72156 * 22 20 18 25 25 H 1.48498 * 109.47554 * 59.72235 * 22 20 18 26 26 C 1.38346 * 120.28831 * 0.24888 * 6 5 4 27 27 C 1.37976 * 120.13804 * 359.45580 * 26 6 5 28 28 H 1.08005 * 119.99409 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00238 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00538 * 180.02562 * 2 1 3 31 31 H 1.08003 * 120.07329 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.92659 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.46640 * 330.00235 * 7 6 5 34 34 H 1.08994 * 109.47410 * 209.99830 * 7 6 5 35 35 H 1.08997 * 109.47413 * 60.00687 * 8 7 6 36 36 H 1.09000 * 109.47173 * 299.99593 * 8 7 6 37 37 H 0.96998 * 119.99747 * 344.99313 * 9 8 7 38 38 H 1.08992 * 109.47772 * 270.00982 * 14 13 10 39 39 H 1.09003 * 109.46297 * 30.00408 * 14 13 10 40 40 H 1.08994 * 109.47613 * 150.00053 * 14 13 10 41 41 H 1.09002 * 109.47176 * 173.30103 * 17 15 13 42 42 H 1.09005 * 109.47375 * 293.29940 * 17 15 13 43 43 H 1.09000 * 109.47483 * 53.29843 * 17 15 13 44 44 H 0.97006 * 120.00339 * 355.20022 * 21 20 18 45 45 H 1.07997 * 119.93094 * 179.72480 * 26 6 5 46 46 H 1.08003 * 120.06947 * 180.24695 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 3.4600 1.2836 -0.0005 5 6 4.1439 2.4820 0.0000 6 6 3.4492 3.6783 0.0016 7 6 4.2026 4.9835 0.0028 8 6 4.4569 5.4267 -1.4394 9 7 5.1899 6.6952 -1.4383 10 16 5.9248 7.2282 -2.8232 11 8 6.6673 6.1286 -3.3321 12 8 6.5118 8.4833 -2.5086 13 7 4.7282 7.5348 -3.9262 14 6 4.2779 6.4752 -4.8322 15 6 4.1200 8.8658 -3.9961 16 1 4.5799 9.5150 -3.2511 17 6 4.3395 9.4542 -5.3912 18 6 2.6419 8.7575 -3.7235 19 1 2.1836 7.7863 -3.6088 20 6 1.8744 9.8984 -3.6204 21 7 0.5786 9.8410 -3.8371 22 14 2.6767 11.5270 -3.1806 23 1 1.6434 12.5928 -3.1401 24 1 3.3254 11.4157 -1.8495 25 1 3.6989 11.8673 -4.2026 26 6 2.0658 3.6817 0.0079 27 6 1.3700 2.4902 0.0012 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8657 -0.9352 -0.0004 31 1 4.0036 0.3503 -0.0014 32 1 5.2239 2.4860 -0.0008 33 1 5.1552 4.8526 0.5160 34 1 3.6137 5.7425 0.5176 35 1 3.5043 5.5576 -1.9527 36 1 5.0459 4.6677 -1.9543 37 1 5.2446 7.2230 -0.6263 38 1 4.8737 6.4996 -5.7445 39 1 4.3970 5.5068 -4.3462 40 1 3.2279 6.6307 -5.0797 41 1 3.7874 10.3897 -5.4821 42 1 5.4023 9.6434 -5.5427 43 1 3.9853 8.7488 -6.1430 44 1 0.1732 9.0124 -4.1370 45 1 1.5292 4.6190 0.0136 46 1 0.2900 2.4942 0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291787639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:23 Heat of formation + Delta-G solvation = -60.710714 kcal Electronic energy + Delta-G solvation = -27325.534207 eV Core-core repulsion = 23534.170589 eV Total energy + Delta-G solvation = -3791.363618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42254 -38.41765 -38.05387 -37.19263 -36.95636 -35.14342 -34.60599 -32.20822 -31.75158 -31.57414 -28.45633 -27.26552 -26.62688 -24.76890 -23.72082 -22.60254 -22.36861 -20.59160 -20.33752 -19.49867 -18.80289 -18.45769 -17.56140 -17.34497 -16.60214 -16.45214 -15.95998 -15.67383 -15.50432 -15.32836 -15.06520 -14.79661 -14.60501 -14.21358 -14.12913 -13.98226 -13.93602 -13.58878 -13.51210 -13.40438 -13.26035 -13.23206 -13.02028 -12.85736 -12.59669 -12.44064 -12.40227 -12.21493 -11.91589 -11.86963 -11.69549 -11.65026 -11.21159 -11.12858 -10.55821 -10.37581 -9.87353 -9.83356 -9.03404 -8.66002 -6.28773 -0.36497 -0.00848 0.48999 1.51224 1.53810 1.61680 1.71765 1.93446 2.49497 2.55665 2.94923 3.04294 3.36914 3.76610 3.82387 3.92106 3.99061 4.00503 4.08666 4.11932 4.38759 4.45089 4.50462 4.51352 4.57457 4.63224 4.64543 4.75846 4.82814 4.86082 4.89739 4.94888 5.07095 5.07205 5.14998 5.17999 5.30614 5.37480 5.43944 5.52651 5.68229 5.69498 5.72651 5.90142 6.00666 6.07115 6.11836 6.13744 6.69269 7.42184 8.67194 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.003265 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.662426 B = 8574.545120 C = 9809.050713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.132 4.132 3 C -0.076 4.076 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.090 4.090 7 C -0.080 4.080 8 C 0.126 3.874 9 N -1.119 6.119 10 S 2.798 3.202 11 O -1.003 7.003 12 O -1.010 7.010 13 N -0.992 5.992 14 C 0.102 3.898 15 C 0.246 3.754 16 H 0.041 0.959 17 C -0.154 4.154 18 C -0.603 4.603 19 H 0.043 0.957 20 C 0.001 3.999 21 N -0.925 5.925 22 Si 1.050 2.950 23 H -0.286 1.286 24 H -0.267 1.267 25 H -0.250 1.250 26 C -0.125 4.125 27 C -0.126 4.126 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.423 0.577 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.258 0.742 45 H 0.122 0.878 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 -17.083 8.286 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.076 4.076 4 C -0.132 4.132 5 C -0.137 4.137 6 C -0.091 4.091 7 C -0.118 4.118 8 C 0.000 4.000 9 N -0.881 5.881 10 S 2.807 3.193 11 O -0.986 6.986 12 O -0.994 6.994 13 N -0.833 5.833 14 C -0.043 4.043 15 C 0.141 3.859 16 H 0.059 0.941 17 C -0.213 4.213 18 C -0.642 4.642 19 H 0.061 0.939 20 C -0.201 4.201 21 N -0.560 5.560 22 Si 0.873 3.127 23 H -0.212 1.212 24 H -0.193 1.193 25 H -0.174 1.174 26 C -0.143 4.143 27 C -0.144 4.144 28 H 0.141 0.859 29 H 0.117 0.883 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.258 0.742 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.140 0.860 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.273 -15.521 8.279 18.365 hybrid contribution -0.705 -1.308 -0.070 1.488 sum 4.568 -16.829 8.210 19.274 Atomic orbital electron populations 1.24602 0.95681 1.03146 0.97896 1.21970 0.95643 0.95654 1.01734 1.19420 0.93976 0.93670 1.00506 1.21535 0.93284 0.98889 0.99463 1.21273 1.00903 0.91638 0.99872 1.19896 0.93677 0.95061 1.00445 1.20738 1.01527 0.94395 0.95186 1.21275 0.95900 0.83795 0.99042 1.55703 1.71653 1.32337 1.28427 1.01192 0.73213 0.71988 0.72885 1.93537 1.69666 1.55414 1.80013 1.93539 1.76758 1.44431 1.84721 1.57460 1.56846 1.18962 1.50055 1.21345 1.01163 0.88259 0.93562 1.18764 0.92821 0.79568 0.94785 0.94145 1.22336 0.99568 1.00751 0.98644 1.22235 0.93323 0.94231 1.54402 0.93879 1.26614 0.95031 1.05288 0.93176 1.70963 1.13146 1.29097 1.42808 0.83985 0.75928 0.73763 0.79019 1.21208 1.19252 1.17413 1.21191 0.94147 0.98549 1.00397 1.21487 1.00542 0.91943 1.00403 0.85925 0.88270 0.84818 0.83730 0.84159 0.88474 0.89781 0.92655 0.90343 0.74202 0.92250 0.91064 0.91558 0.92854 0.93527 0.92562 0.93274 0.85958 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 14.15 66.67 0.94 -1.48 16 2 C -0.13 -2.05 9.91 23.65 0.23 -1.82 16 3 C -0.08 -1.49 5.87 -20.12 -0.12 -1.61 16 4 C -0.11 -2.07 9.79 22.52 0.22 -1.85 16 5 C -0.12 -2.29 9.68 22.23 0.22 -2.07 16 6 C -0.09 -1.94 5.14 -19.81 -0.10 -2.05 16 7 C -0.08 -1.66 5.48 29.85 0.16 -1.50 16 8 C 0.13 3.27 6.23 86.38 0.54 3.81 16 9 N -1.12 -32.54 6.05 -187.48 -1.14 -33.67 16 10 S 2.80 101.34 6.09 -56.49 -0.34 100.99 16 11 O -1.00 -37.83 16.68 -128.00 -2.14 -39.97 16 12 O -1.01 -42.07 16.70 -128.00 -2.14 -44.20 16 13 N -0.99 -38.59 3.12 -520.45 -1.62 -40.22 16 14 C 0.10 3.49 9.15 127.77 1.17 4.66 16 15 C 0.25 11.08 2.22 44.24 0.10 11.18 16 16 H 0.04 1.90 5.49 -2.39 -0.01 1.88 16 17 C -0.15 -6.41 9.01 71.98 0.65 -5.76 16 18 C -0.60 -31.05 8.30 25.60 0.21 -30.84 16 19 H 0.04 2.38 7.38 -2.91 -0.02 2.35 16 20 C 0.00 0.03 5.20 84.66 0.44 0.47 16 21 N -0.93 -54.14 13.70 21.45 0.29 -53.84 16 22 Si 1.05 47.87 26.44 68.60 1.81 49.68 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 H -0.25 -10.38 6.12 99.48 0.61 -9.77 16 26 C -0.12 -2.86 9.68 22.23 0.22 -2.64 16 27 C -0.13 -2.69 9.40 22.52 0.21 -2.48 16 28 H 0.12 1.18 8.06 -2.91 -0.02 1.15 16 29 H 0.10 1.39 6.04 -2.91 -0.02 1.37 16 30 H 0.13 1.55 8.06 -2.91 -0.02 1.52 16 31 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.10 1.67 8.08 -2.39 -0.02 1.65 16 34 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.98 7.75 -2.39 -0.02 1.96 16 37 H 0.42 10.67 8.65 -96.75 -0.84 9.83 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 2.11 7.79 -2.39 -0.02 2.09 16 40 H 0.07 2.44 6.92 -2.39 -0.02 2.43 16 41 H 0.05 2.28 5.44 -2.39 -0.01 2.27 16 42 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.06 2.23 7.45 -2.39 -0.02 2.21 16 44 H 0.26 15.19 8.73 -92.70 -0.81 14.38 16 45 H 0.12 2.79 8.06 -2.91 -0.02 2.76 16 46 H 0.13 2.45 6.17 -2.91 -0.02 2.43 16 Total: -1.00 -67.00 387.01 -0.17 -67.17 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.01 Total: 28.03 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 5.09 Total: -33.97 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -2.47 Total: -127.73 kcal Atomic # 8 Polarization: -79.90 SS G_CDS: -4.27 Total: -84.17 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.81 Total: 49.68 kcal Atomic # 16 Polarization: 101.34 SS G_CDS: -0.34 Total: 100.99 kcal Total: -67.00 -0.17 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291787639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.456 kcal (2) G-P(sol) polarization free energy of solvation -66.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds