Wall clock time and date at job start Tue Mar 31 2020 20:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 S 1.65599 * 120.00250 * 2 1 4 4 O 1.42095 * 106.40402 * 311.29701 * 3 2 1 5 5 O 1.42106 * 106.40068 * 178.37749 * 3 2 1 6 6 C 1.76196 * 107.21877 * 64.83792 * 3 2 1 7 7 C 1.38076 * 119.82760 * 243.02581 * 6 3 2 8 8 C 1.38218 * 119.82759 * 179.97438 * 7 6 3 9 9 C 1.38054 * 119.87230 * 0.07989 * 8 7 6 10 10 C 1.38690 * 120.37438 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.73110 * 359.83492 * 10 9 8 12 12 C 1.50712 * 121.66006 * 180.25048 * 11 10 9 13 13 C 1.52890 * 109.96506 * 343.22832 * 12 11 10 14 14 N 1.47162 * 108.67935 * 50.23796 * 13 12 11 15 15 C 1.46894 * 111.00005 * 165.39208 * 14 13 12 16 16 H 1.09000 * 109.47031 * 176.63164 * 15 14 13 17 17 C 1.52996 * 109.47668 * 56.62899 * 15 14 13 18 18 C 1.53000 * 109.46903 * 296.62751 * 15 14 13 19 19 C 1.50692 * 109.47412 * 297.29491 * 18 15 14 20 20 H 1.08006 * 120.00007 * 4.88614 * 19 18 15 21 21 C 1.37880 * 120.00206 * 184.87910 * 19 18 15 22 22 N 1.31515 * 119.99819 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00258 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47164 * 89.99674 * 23 21 19 25 25 H 1.48500 * 109.47434 * 210.00258 * 23 21 19 26 26 H 1.48510 * 109.47036 * 330.00304 * 23 21 19 27 27 C 1.46551 * 110.29232 * 289.00393 * 14 13 12 28 28 H 1.08994 * 109.46926 * 184.98807 * 1 2 3 29 29 H 1.09001 * 109.46358 * 304.98847 * 1 2 3 30 30 H 1.09003 * 109.46742 * 64.98589 * 1 2 3 31 31 H 0.97003 * 119.99833 * 180.02562 * 2 1 3 32 32 H 1.07998 * 120.08016 * 359.97438 * 7 6 3 33 33 H 1.08001 * 120.06033 * 180.02562 * 8 7 6 34 34 H 1.07999 * 119.81464 * 179.97438 * 9 8 7 35 35 H 1.09006 * 109.38937 * 223.07863 * 12 11 10 36 36 H 1.09000 * 109.30971 * 103.33419 * 12 11 10 37 37 H 1.08999 * 109.62892 * 170.04442 * 13 12 11 38 38 H 1.09004 * 109.63145 * 290.42748 * 13 12 11 39 39 H 1.09003 * 109.46977 * 60.00209 * 17 15 14 40 40 H 1.08999 * 109.47524 * 179.97438 * 17 15 14 41 41 H 1.09000 * 109.47111 * 300.00216 * 17 15 14 42 42 H 1.09002 * 109.47293 * 57.29748 * 18 15 14 43 43 H 1.09006 * 109.47391 * 177.29375 * 18 15 14 44 44 H 0.97004 * 119.99494 * 179.97438 * 22 21 19 45 45 H 1.08997 * 109.12914 * 291.95692 * 27 14 13 46 46 H 1.09000 * 109.16750 * 172.55259 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7146 2.2315 -1.0241 5 8 3.6738 1.1002 0.0386 6 6 1.9342 2.2436 1.5233 7 6 1.2763 3.4575 1.5176 8 6 0.9943 4.0923 2.7126 9 6 1.3729 3.5109 3.9061 10 6 2.0358 2.2927 3.9135 11 6 2.3143 1.6585 2.7213 12 6 3.0272 0.3313 2.6790 13 6 3.7136 0.0645 4.0189 14 7 2.7364 0.2741 5.0990 15 6 3.2213 -0.2921 6.3648 16 1 2.5078 -0.0712 7.1586 17 6 4.5780 0.3238 6.7125 18 6 3.3712 -1.8080 6.2211 19 6 2.0232 -2.4221 5.9443 20 1 1.1607 -1.7884 5.7992 21 6 1.8909 -3.7928 5.8763 22 7 2.9411 -4.5644 6.0534 23 14 0.2201 -4.5540 5.5325 24 1 0.0406 -4.7128 4.0669 25 1 0.1375 -5.8838 6.1883 26 1 -0.8463 -3.6704 6.0688 27 6 2.4333 1.7009 5.2404 28 1 -0.3633 -1.0237 0.0893 29 1 -0.3632 0.5893 0.8420 30 1 -0.3633 0.4346 -0.9313 31 1 1.9500 -0.8401 -0.0004 32 1 0.9828 3.9098 0.5818 33 1 0.4794 5.0417 2.7125 34 1 1.1525 4.0079 4.8392 35 1 3.7751 0.3474 1.8862 36 1 2.3046 -0.4598 2.4787 37 1 4.0754 -0.9634 4.0467 38 1 4.5511 0.7508 4.1444 39 1 4.4712 1.4037 6.8149 40 1 4.9376 -0.0960 7.6520 41 1 5.2915 0.1029 5.9187 42 1 4.0478 -2.0296 5.3958 43 1 3.7765 -2.2222 7.1444 44 1 2.8479 -5.5287 6.0059 45 1 3.3163 2.2182 5.6156 46 1 1.6148 1.8243 5.9496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298579204.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:37 Heat of formation + Delta-G solvation = -64.695374 kcal Electronic energy + Delta-G solvation = -28655.451283 eV Core-core repulsion = 24863.914877 eV Total energy + Delta-G solvation = -3791.536406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31997 -39.01132 -38.44073 -37.03468 -36.00330 -35.36232 -34.25962 -33.50260 -30.97304 -30.41297 -29.06064 -26.87149 -26.01348 -24.82210 -24.69905 -24.00966 -21.62076 -20.48222 -19.82649 -18.87851 -18.40093 -18.23253 -17.64776 -16.88595 -16.85192 -16.65420 -16.20946 -15.93946 -15.62732 -15.43843 -15.02469 -14.79012 -14.50871 -14.42153 -14.19375 -13.82691 -13.65338 -13.52885 -13.44271 -13.33750 -13.21539 -13.15819 -12.95389 -12.85822 -12.67644 -12.61948 -12.45889 -12.44112 -12.24602 -11.85566 -11.64104 -11.40500 -11.08004 -11.00013 -10.54434 -10.44004 -10.25778 -9.63729 -8.97244 -8.07050 -6.11325 -0.64599 -0.18512 0.30461 1.43260 1.44167 1.54751 1.96512 2.41738 2.49220 2.70473 3.02975 3.28780 3.33918 3.60806 3.68340 3.97749 4.01529 4.17995 4.19897 4.26641 4.31004 4.35836 4.41438 4.52747 4.57289 4.59093 4.65332 4.71224 4.76582 4.84757 4.88281 4.93942 4.97759 5.04394 5.09941 5.15071 5.19641 5.25739 5.32804 5.45155 5.55002 5.73834 5.86403 5.92614 6.02458 6.28440 6.36075 6.52883 7.03259 7.54616 9.04897 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011351 B = 0.004425 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.100571 B = 6325.723090 C = 7503.458672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -1.115 6.115 3 S 2.713 3.287 4 O -0.982 6.982 5 O -0.987 6.987 6 C -0.689 4.689 7 C -0.033 4.033 8 C -0.140 4.140 9 C -0.056 4.056 10 C -0.110 4.110 11 C 0.025 3.975 12 C -0.130 4.130 13 C 0.061 3.939 14 N -0.523 5.523 15 C 0.095 3.905 16 H 0.072 0.928 17 C -0.177 4.177 18 C 0.034 3.966 19 C -0.495 4.495 20 H 0.060 0.940 21 C -0.003 4.003 22 N -0.940 5.940 23 Si 0.953 3.047 24 H -0.276 1.276 25 H -0.290 1.290 26 H -0.267 1.267 27 C 0.088 3.912 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.427 0.573 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.048 0.952 42 H -0.003 1.003 43 H -0.005 1.005 44 H 0.257 0.743 45 H 0.057 0.943 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 17.210 -8.557 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.877 5.877 3 S 2.804 3.196 4 O -0.972 6.972 5 O -0.977 6.977 6 C -0.777 4.777 7 C -0.052 4.052 8 C -0.158 4.158 9 C -0.074 4.074 10 C -0.111 4.111 11 C 0.023 3.977 12 C -0.167 4.167 13 C -0.067 4.067 14 N -0.246 5.246 15 C -0.013 4.013 16 H 0.090 0.910 17 C -0.236 4.236 18 C -0.003 4.003 19 C -0.534 4.534 20 H 0.079 0.921 21 C -0.199 4.199 22 N -0.582 5.582 23 Si 0.779 3.221 24 H -0.201 1.201 25 H -0.216 1.216 26 H -0.192 1.192 27 C -0.039 4.039 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.263 0.737 32 H 0.172 0.828 33 H 0.184 0.816 34 H 0.176 0.824 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.211 17.244 -9.348 20.295 hybrid contribution 0.168 -0.960 0.933 1.349 sum -5.043 16.284 -8.415 19.011 Atomic orbital electron populations 1.21692 0.77081 1.05683 1.02385 1.55074 1.17161 1.23725 1.91771 1.01091 0.72333 0.72731 0.73460 1.93517 1.79044 1.69617 1.54974 1.93524 1.32963 1.83734 1.87468 1.30579 1.17942 1.10712 1.18503 1.21190 0.91711 0.91520 1.00764 1.21546 1.01300 1.01709 0.91277 1.21704 0.92661 0.92793 1.00280 1.19940 1.00632 0.96262 0.94257 1.19253 0.92417 0.94179 0.91823 1.21338 1.00918 0.94383 1.00036 1.21944 0.92990 1.01296 0.90447 1.62262 1.43314 1.13406 1.05658 1.21640 0.94121 0.95440 0.90117 0.91024 1.22419 0.98334 1.00997 1.01804 1.19093 0.95963 0.90368 0.94893 1.21470 0.95563 0.91049 1.45278 0.92129 1.25816 0.99693 0.98265 0.96159 1.70096 1.31084 1.04232 1.52798 0.85631 0.80771 0.77428 0.78258 1.20140 1.21636 1.19167 1.21057 1.00956 0.88019 0.93874 0.88099 0.91860 0.90760 0.73706 0.82764 0.81584 0.82416 0.87335 0.88767 0.91087 0.94344 0.91328 0.92209 0.93310 0.98455 0.98647 0.93384 0.92495 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 11.13 127.77 1.42 2.73 16 2 N -1.12 -23.17 5.53 -206.54 -1.14 -24.31 16 3 S 2.71 69.59 5.03 -56.49 -0.28 69.31 16 4 O -0.98 -27.70 16.72 -128.00 -2.14 -29.84 16 5 O -0.99 -30.85 15.47 -128.00 -1.98 -32.83 16 6 C -0.69 -17.57 5.87 22.33 0.13 -17.44 16 7 C -0.03 -0.68 9.54 22.23 0.21 -0.47 16 8 C -0.14 -2.43 10.05 22.22 0.22 -2.20 16 9 C -0.06 -1.09 9.65 22.33 0.22 -0.88 16 10 C -0.11 -2.90 5.79 -19.86 -0.12 -3.01 16 11 C 0.02 0.72 5.77 -19.85 -0.11 0.60 16 12 C -0.13 -4.12 4.90 29.82 0.15 -3.97 16 13 C 0.06 2.16 4.42 86.22 0.38 2.54 16 14 N -0.52 -18.59 4.26 -876.15 -3.73 -22.33 16 15 C 0.09 3.64 2.31 44.92 0.10 3.74 16 16 H 0.07 2.74 8.12 -2.39 -0.02 2.72 16 17 C -0.18 -5.62 8.50 71.98 0.61 -5.01 16 18 C 0.03 1.69 4.31 29.85 0.13 1.82 16 19 C -0.50 -26.92 8.80 25.60 0.23 -26.70 16 20 H 0.06 3.26 7.68 -2.91 -0.02 3.24 16 21 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 22 N -0.94 -56.27 13.29 21.45 0.28 -55.99 16 23 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 24 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.09 2.45 5.08 85.60 0.43 2.89 16 28 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.43 7.92 8.96 -96.74 -0.87 7.06 16 32 H 0.15 2.73 7.32 -2.91 -0.02 2.71 16 33 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.11 3.39 5.34 -2.38 -0.01 3.38 16 36 H 0.09 3.02 7.82 -2.39 -0.02 3.00 16 37 H 0.07 2.90 5.80 -2.39 -0.01 2.88 16 38 H 0.04 1.27 7.08 -2.38 -0.02 1.25 16 39 H 0.07 1.80 6.48 -2.39 -0.02 1.79 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.59 6.70 -2.39 -0.02 1.57 16 42 H 0.00 -0.14 6.10 -2.39 -0.01 -0.16 16 43 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 44 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 45 H 0.06 1.44 6.27 -2.39 -0.01 1.43 16 46 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -72.16 369.67 -2.36 -74.53 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.13 Total: 20.57 kcal Atomic # 6 Polarization: -49.56 SS G_CDS: 4.47 Total: -45.09 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.59 Total: -102.63 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -4.12 Total: -62.67 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 69.59 SS G_CDS: -0.28 Total: 69.31 kcal Total: -72.16 -2.36 -74.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298579204.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.833 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds