Wall clock time and date at job start Tue Mar 31 2020 20:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65596 * 120.00018 * 2 1 4 4 O 1.42107 * 106.40408 * 311.71016 * 3 2 1 5 5 O 1.42094 * 106.40338 * 178.78972 * 3 2 1 6 6 C 1.76201 * 107.21798 * 65.24638 * 3 2 1 7 7 C 1.38080 * 119.82987 * 243.14322 * 6 3 2 8 8 C 1.38208 * 119.82509 * 179.97438 * 7 6 3 9 9 C 1.38054 * 119.87662 * 0.07173 * 8 7 6 10 10 C 1.38691 * 120.37627 * 359.97438 * 9 8 7 11 11 C 1.37741 * 119.75778 * 359.97438 * 10 9 8 12 12 C 1.50712 * 121.75594 * 180.28442 * 11 10 9 13 13 C 1.52899 * 109.87654 * 343.06085 * 12 11 10 14 14 N 1.47164 * 108.49457 * 50.44559 * 13 12 11 15 15 C 1.46900 * 111.00001 * 165.27138 * 14 13 12 16 16 H 1.09000 * 109.46898 * 310.00477 * 15 14 13 17 17 C 1.53006 * 109.47013 * 70.00013 * 15 14 13 18 18 C 1.52998 * 109.47196 * 189.99877 * 15 14 13 19 19 C 1.50703 * 109.46735 * 64.99954 * 18 15 14 20 20 H 1.08001 * 120.00335 * 0.02562 * 19 18 15 21 21 C 1.37876 * 119.99764 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00204 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00206 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47454 * 89.99437 * 23 21 19 25 25 H 1.48502 * 109.47327 * 209.99900 * 23 21 19 26 26 H 1.48507 * 109.47005 * 329.99465 * 23 21 19 27 27 C 1.46637 * 110.24715 * 288.69245 * 14 13 12 28 28 H 1.09004 * 109.46925 * 304.23597 * 1 2 3 29 29 H 1.09005 * 109.47018 * 64.23517 * 1 2 3 30 30 H 1.08996 * 109.47497 * 184.24072 * 1 2 3 31 31 H 0.96998 * 119.99931 * 180.02562 * 2 1 3 32 32 H 1.07999 * 120.07913 * 0.02562 * 7 6 3 33 33 H 1.08009 * 120.06221 * 180.09103 * 8 7 6 34 34 H 1.08000 * 119.81391 * 179.97438 * 9 8 7 35 35 H 1.09005 * 109.39118 * 222.95672 * 12 11 10 36 36 H 1.09004 * 109.39101 * 103.15948 * 12 11 10 37 37 H 1.08997 * 109.63377 * 170.14995 * 13 12 11 38 38 H 1.09001 * 109.62832 * 290.74480 * 13 12 11 39 39 H 1.08997 * 109.47109 * 59.99978 * 17 15 14 40 40 H 1.09002 * 109.47032 * 179.97438 * 17 15 14 41 41 H 1.08997 * 109.46710 * 300.00074 * 17 15 14 42 42 H 1.08996 * 109.47244 * 185.00090 * 18 15 14 43 43 H 1.09004 * 109.46913 * 305.00350 * 18 15 14 44 44 H 0.96994 * 119.99996 * 179.97438 * 22 21 19 45 45 H 1.09007 * 109.26822 * 172.75408 * 27 14 13 46 46 H 1.09001 * 109.27148 * 292.22471 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7082 2.2352 -1.0177 5 8 3.6739 1.1002 0.0288 6 6 1.9435 2.2381 1.5284 7 6 1.2833 3.4509 1.5313 8 6 1.0088 4.0813 2.7302 9 6 1.3968 3.4967 3.9191 10 6 2.0608 2.2791 3.9181 11 6 2.3336 1.6502 2.7234 12 6 3.0468 0.3235 2.6701 13 6 3.7434 0.0539 4.0042 14 7 2.7694 0.2559 5.0887 15 6 3.2600 -0.3152 6.3501 16 1 3.5935 -1.3389 6.1800 17 6 4.4305 0.5230 6.8682 18 6 2.1326 -0.3110 7.3844 19 6 1.0312 -1.2341 6.9306 20 1 1.1261 -1.7704 5.9979 21 6 -0.0971 -1.3948 7.7065 22 7 -1.0585 -2.2000 7.3102 23 14 -0.2609 -0.4678 9.3200 24 1 -0.9184 0.8408 9.0745 25 1 -1.0815 -1.2642 10.2673 26 1 1.0873 -0.2432 9.9009 27 6 2.4673 1.6828 5.2401 28 1 -0.3633 0.5782 0.8496 29 1 -0.3633 0.4467 -0.9256 30 1 -0.3634 -1.0248 0.0760 31 1 1.9500 -0.8400 -0.0004 32 1 0.9817 3.9052 0.5990 33 1 0.4913 5.0293 2.7370 34 1 1.1821 3.9903 4.8554 35 1 3.7888 0.3433 1.8718 36 1 2.3240 -0.4682 2.4728 37 1 4.1080 -0.9731 4.0260 38 1 4.5777 0.7444 4.1278 39 1 4.0972 1.5467 7.0382 40 1 4.7943 0.0995 7.8044 41 1 5.2337 0.5200 6.1313 42 1 2.5194 -0.6516 8.3449 43 1 1.7392 0.7001 7.4890 44 1 -1.8521 -2.3133 7.8563 45 1 1.6534 1.8043 5.9550 46 1 3.3518 2.2004 5.6116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298579209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:40 Heat of formation + Delta-G solvation = -37.403630 kcal Electronic energy + Delta-G solvation = -28588.933032 eV Core-core repulsion = 24798.580085 eV Total energy + Delta-G solvation = -3790.352947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.22783 -37.78737 -37.35755 -35.95560 -35.17316 -34.01805 -32.64299 -32.07339 -30.15254 -28.92977 -27.85804 -26.09324 -25.01814 -23.58587 -23.00301 -22.47929 -20.18634 -19.55104 -18.64559 -17.94880 -17.41700 -16.63517 -16.43814 -15.93817 -15.66734 -15.46112 -14.91125 -14.59277 -14.31530 -14.17249 -13.95410 -13.59164 -13.26216 -13.16369 -12.94741 -12.88700 -12.51872 -12.44578 -12.26047 -12.16191 -12.14443 -11.87717 -11.82739 -11.67662 -11.56425 -11.34488 -11.19632 -10.79902 -10.59816 -10.50352 -10.11493 -9.79359 -9.72399 -9.60270 -9.25761 -9.09747 -8.57688 -8.48594 -7.67943 -5.97118 -3.91446 0.33301 0.82062 1.32731 2.89394 3.29343 3.38187 3.39454 3.41052 3.69909 4.26930 4.35357 4.48065 4.63954 4.73145 4.90002 4.94063 5.09153 5.26895 5.32423 5.36573 5.37593 5.43500 5.45746 5.58011 5.63448 5.67092 5.67509 5.74854 5.75223 5.82538 5.89521 5.96649 6.04661 6.11655 6.18571 6.27823 6.34853 6.43994 6.53898 6.67478 6.78683 6.84311 7.04351 7.22420 7.59563 7.70218 7.86755 8.65175 9.15105 9.65765 11.16822 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014319 B = 0.003758 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.029658 B = 7449.265423 C = 7674.249163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.118 6.118 3 S 2.702 3.298 4 O -0.964 6.964 5 O -0.960 6.960 6 C -0.684 4.684 7 C -0.028 4.028 8 C -0.146 4.146 9 C -0.059 4.059 10 C -0.085 4.085 11 C 0.042 3.958 12 C -0.132 4.132 13 C 0.055 3.945 14 N -0.503 5.503 15 C 0.095 3.905 16 H 0.081 0.919 17 C -0.190 4.190 18 C -0.007 4.007 19 C -0.491 4.491 20 H 0.079 0.921 21 C 0.063 3.937 22 N -0.907 5.907 23 Si 0.871 3.129 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.268 1.268 27 C 0.087 3.913 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.420 0.580 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.019 0.981 43 H 0.011 0.989 44 H 0.260 0.740 45 H 0.099 0.901 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 9.010 -12.046 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.878 5.878 3 S 2.792 3.208 4 O -0.954 6.954 5 O -0.950 6.950 6 C -0.771 4.771 7 C -0.047 4.047 8 C -0.165 4.165 9 C -0.078 4.078 10 C -0.086 4.086 11 C 0.040 3.960 12 C -0.169 4.169 13 C -0.073 4.073 14 N -0.226 5.226 15 C -0.013 4.013 16 H 0.099 0.901 17 C -0.249 4.249 18 C -0.044 4.044 19 C -0.530 4.530 20 H 0.097 0.903 21 C -0.137 4.137 22 N -0.547 5.547 23 Si 0.699 3.301 24 H -0.206 1.206 25 H -0.216 1.216 26 H -0.193 1.193 27 C -0.041 4.041 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.254 0.746 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.029 0.971 44 H 0.070 0.930 45 H 0.117 0.883 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.183 9.143 -12.787 16.891 hybrid contribution 0.147 0.729 2.025 2.158 sum 6.330 9.871 -10.761 15.916 Atomic orbital electron populations 1.21490 0.78046 1.04560 1.01969 1.55216 1.16469 1.24138 1.91998 1.01605 0.72946 0.72606 0.73665 1.93550 1.78662 1.68636 1.54590 1.93549 1.31031 1.83322 1.87143 1.30640 1.17331 1.09883 1.19283 1.20824 0.92493 0.92192 0.99238 1.21118 1.02256 1.00850 0.92295 1.21403 0.93746 0.93971 0.98643 1.19843 0.98911 0.94837 0.95052 1.19198 0.91683 0.94207 0.90886 1.21413 1.00831 0.93903 1.00729 1.22050 0.93112 1.01465 0.90687 1.62428 1.41615 1.12789 1.05752 1.21769 0.93510 0.97099 0.88898 0.90132 1.22593 0.99560 1.01332 1.01420 1.19685 0.94114 0.97154 0.93458 1.21029 1.00192 1.24305 1.07433 0.90304 1.25000 0.95986 0.95251 0.97452 1.69903 1.08198 1.38101 1.38474 0.86928 0.78216 0.80114 0.84832 1.20634 1.21580 1.19291 1.21085 1.00823 0.88905 0.93263 0.91765 0.91684 0.89616 0.74596 0.84280 0.85221 0.85291 0.87244 0.88294 0.89898 0.94727 0.92761 0.92214 0.93551 0.96247 0.97120 0.93042 0.88310 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.13 59.85 0.67 1.43 16 2 N -1.12 -11.00 5.54 -16.63 -0.09 -11.10 16 3 S 2.70 33.80 5.03 -107.50 -0.54 33.26 16 4 O -0.96 -13.84 16.71 -57.17 -0.96 -14.79 16 5 O -0.96 -13.84 15.46 -57.17 -0.88 -14.73 16 6 C -0.68 -9.24 5.89 -39.44 -0.23 -9.47 16 7 C -0.03 -0.35 9.54 -39.65 -0.38 -0.73 16 8 C -0.15 -1.73 10.05 -39.66 -0.40 -2.13 16 9 C -0.06 -0.78 9.65 -39.48 -0.38 -1.16 16 10 C -0.09 -1.31 5.79 -104.68 -0.61 -1.91 16 11 C 0.04 0.62 5.77 -104.60 -0.60 0.02 16 12 C -0.13 -1.86 4.90 -27.93 -0.14 -2.00 16 13 C 0.06 0.82 5.01 -3.73 -0.02 0.81 16 14 N -0.50 -8.91 4.35 -228.19 -0.99 -9.90 16 15 C 0.10 1.75 2.25 -67.71 -0.15 1.59 16 16 H 0.08 1.51 7.89 -51.93 -0.41 1.11 16 17 C -0.19 -2.86 8.43 37.16 0.31 -2.54 16 18 C -0.01 -0.15 3.45 -27.88 -0.10 -0.25 16 19 C -0.49 -13.34 9.39 -34.44 -0.32 -13.67 16 20 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 21 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 22 N -0.91 -27.49 13.96 55.43 0.77 -26.72 16 23 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 27 C 0.09 1.42 4.49 -5.16 -0.02 1.40 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.42 3.30 8.96 -34.47 -0.31 2.99 16 32 H 0.14 1.49 7.32 -52.49 -0.38 1.11 16 33 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.44 5.33 -51.93 -0.28 1.17 16 36 H 0.10 1.35 7.82 -51.93 -0.41 0.94 16 37 H 0.08 1.16 7.85 -51.93 -0.41 0.75 16 38 H 0.03 0.49 7.25 -51.93 -0.38 0.11 16 39 H 0.05 0.79 6.23 -51.93 -0.32 0.47 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 0.62 7.04 -51.93 -0.37 0.26 16 42 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 43 H 0.01 0.24 5.87 -51.93 -0.30 -0.07 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.10 1.77 6.55 -51.92 -0.34 1.43 16 46 H 0.05 0.72 5.92 -51.93 -0.31 0.41 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -34.25 366.69 -11.01 -45.26 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.71 Total: 3.55 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -2.47 Total: -26.91 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.31 Total: -47.71 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -1.84 Total: -29.52 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 33.80 SS G_CDS: -0.54 Total: 33.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.25 -11.01 -45.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298579209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.854 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds