Wall clock time and date at job start Tue Mar 31 2020 20:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65596 * 120.00018 * 2 1 4 4 O 1.42107 * 106.40408 * 311.71016 * 3 2 1 5 5 O 1.42094 * 106.40338 * 178.78972 * 3 2 1 6 6 C 1.76201 * 107.21798 * 65.24638 * 3 2 1 7 7 C 1.38080 * 119.82987 * 243.14322 * 6 3 2 8 8 C 1.38208 * 119.82509 * 179.97438 * 7 6 3 9 9 C 1.38054 * 119.87662 * 0.07173 * 8 7 6 10 10 C 1.38691 * 120.37627 * 359.97438 * 9 8 7 11 11 C 1.37741 * 119.75778 * 359.97438 * 10 9 8 12 12 C 1.50712 * 121.75594 * 180.28442 * 11 10 9 13 13 C 1.52899 * 109.87654 * 343.06085 * 12 11 10 14 14 N 1.47164 * 108.49457 * 50.44559 * 13 12 11 15 15 C 1.46900 * 111.00001 * 165.27138 * 14 13 12 16 16 H 1.09000 * 109.46898 * 310.00477 * 15 14 13 17 17 C 1.53006 * 109.47013 * 70.00013 * 15 14 13 18 18 C 1.52998 * 109.47196 * 189.99877 * 15 14 13 19 19 C 1.50703 * 109.46735 * 64.99954 * 18 15 14 20 20 H 1.08001 * 120.00335 * 0.02562 * 19 18 15 21 21 C 1.37876 * 119.99764 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00204 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00206 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47454 * 89.99437 * 23 21 19 25 25 H 1.48502 * 109.47327 * 209.99900 * 23 21 19 26 26 H 1.48507 * 109.47005 * 329.99465 * 23 21 19 27 27 C 1.46637 * 110.24715 * 288.69245 * 14 13 12 28 28 H 1.09004 * 109.46925 * 304.23597 * 1 2 3 29 29 H 1.09005 * 109.47018 * 64.23517 * 1 2 3 30 30 H 1.08996 * 109.47497 * 184.24072 * 1 2 3 31 31 H 0.96998 * 119.99931 * 180.02562 * 2 1 3 32 32 H 1.07999 * 120.07913 * 0.02562 * 7 6 3 33 33 H 1.08009 * 120.06221 * 180.09103 * 8 7 6 34 34 H 1.08000 * 119.81391 * 179.97438 * 9 8 7 35 35 H 1.09005 * 109.39118 * 222.95672 * 12 11 10 36 36 H 1.09004 * 109.39101 * 103.15948 * 12 11 10 37 37 H 1.08997 * 109.63377 * 170.14995 * 13 12 11 38 38 H 1.09001 * 109.62832 * 290.74480 * 13 12 11 39 39 H 1.08997 * 109.47109 * 59.99978 * 17 15 14 40 40 H 1.09002 * 109.47032 * 179.97438 * 17 15 14 41 41 H 1.08997 * 109.46710 * 300.00074 * 17 15 14 42 42 H 1.08996 * 109.47244 * 185.00090 * 18 15 14 43 43 H 1.09004 * 109.46913 * 305.00350 * 18 15 14 44 44 H 0.96994 * 119.99996 * 179.97438 * 22 21 19 45 45 H 1.09007 * 109.26822 * 172.75408 * 27 14 13 46 46 H 1.09001 * 109.27148 * 292.22471 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7082 2.2352 -1.0177 5 8 3.6739 1.1002 0.0288 6 6 1.9435 2.2381 1.5284 7 6 1.2833 3.4509 1.5313 8 6 1.0088 4.0813 2.7302 9 6 1.3968 3.4967 3.9191 10 6 2.0608 2.2791 3.9181 11 6 2.3336 1.6502 2.7234 12 6 3.0468 0.3235 2.6701 13 6 3.7434 0.0539 4.0042 14 7 2.7694 0.2559 5.0887 15 6 3.2600 -0.3152 6.3501 16 1 3.5935 -1.3389 6.1800 17 6 4.4305 0.5230 6.8682 18 6 2.1326 -0.3110 7.3844 19 6 1.0312 -1.2341 6.9306 20 1 1.1261 -1.7704 5.9979 21 6 -0.0971 -1.3948 7.7065 22 7 -1.0585 -2.2000 7.3102 23 14 -0.2609 -0.4678 9.3200 24 1 -0.9184 0.8408 9.0745 25 1 -1.0815 -1.2642 10.2673 26 1 1.0873 -0.2432 9.9009 27 6 2.4673 1.6828 5.2401 28 1 -0.3633 0.5782 0.8496 29 1 -0.3633 0.4467 -0.9256 30 1 -0.3634 -1.0248 0.0760 31 1 1.9500 -0.8400 -0.0004 32 1 0.9817 3.9052 0.5990 33 1 0.4913 5.0293 2.7370 34 1 1.1821 3.9903 4.8554 35 1 3.7888 0.3433 1.8718 36 1 2.3240 -0.4682 2.4728 37 1 4.1080 -0.9731 4.0260 38 1 4.5777 0.7444 4.1278 39 1 4.0972 1.5467 7.0382 40 1 4.7943 0.0995 7.8044 41 1 5.2337 0.5200 6.1313 42 1 2.5194 -0.6516 8.3449 43 1 1.7392 0.7001 7.4890 44 1 -1.8521 -2.3133 7.8563 45 1 1.6534 1.8043 5.9550 46 1 3.3518 2.2004 5.6116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298579209.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:40 Heat of formation + Delta-G solvation = -62.355452 kcal Electronic energy + Delta-G solvation = -28590.015024 eV Core-core repulsion = 24798.580085 eV Total energy + Delta-G solvation = -3791.434939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34205 -39.00861 -38.44164 -37.02812 -36.02175 -35.44195 -34.27550 -33.41636 -31.47549 -30.15299 -29.43023 -26.87130 -26.22756 -24.98052 -24.09180 -23.97082 -21.52790 -20.55345 -19.90377 -18.93560 -18.74871 -18.42144 -17.46416 -16.99087 -16.80739 -16.63346 -16.22315 -15.96774 -15.64275 -15.33836 -14.93870 -14.82196 -14.51778 -14.40915 -14.19408 -14.10163 -13.82812 -13.79135 -13.48615 -13.37462 -13.27709 -13.20136 -13.01899 -12.89121 -12.66567 -12.56422 -12.42852 -12.31974 -11.99627 -11.69769 -11.62979 -11.53909 -11.32211 -11.04916 -10.65257 -10.54402 -10.26610 -9.64323 -8.96359 -8.15455 -6.13762 -0.64530 -0.19841 0.29600 1.37054 1.39610 1.49488 1.96597 2.40112 2.42849 2.70380 2.99686 3.22844 3.34036 3.58898 3.67152 3.95457 4.00138 4.11651 4.19756 4.26812 4.29675 4.34140 4.36214 4.53616 4.54098 4.58607 4.65424 4.69405 4.73851 4.83235 4.87044 4.92098 4.98493 4.99778 5.06484 5.08766 5.12795 5.19507 5.23941 5.30892 5.49895 5.55451 5.76591 5.84664 6.06777 6.29869 6.34107 6.53469 6.94326 7.46708 9.01777 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014319 B = 0.003758 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.029658 B = 7449.265423 C = 7674.249163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -1.111 6.111 3 S 2.719 3.281 4 O -0.982 6.982 5 O -0.981 6.981 6 C -0.690 4.690 7 C -0.033 4.033 8 C -0.141 4.141 9 C -0.065 4.065 10 C -0.111 4.111 11 C 0.023 3.977 12 C -0.131 4.131 13 C 0.056 3.944 14 N -0.529 5.529 15 C 0.098 3.902 16 H 0.069 0.931 17 C -0.179 4.179 18 C -0.004 4.004 19 C -0.486 4.486 20 H 0.037 0.963 21 C 0.000 4.000 22 N -0.957 5.957 23 Si 0.938 3.062 24 H -0.272 1.272 25 H -0.292 1.292 26 H -0.247 1.247 27 C 0.091 3.909 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.429 0.571 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.148 0.852 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.017 0.983 44 H 0.259 0.741 45 H 0.077 0.923 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.143 10.968 -11.711 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.874 5.874 3 S 2.809 3.191 4 O -0.972 6.972 5 O -0.971 6.971 6 C -0.778 4.778 7 C -0.053 4.053 8 C -0.160 4.160 9 C -0.083 4.083 10 C -0.112 4.112 11 C 0.022 3.978 12 C -0.168 4.168 13 C -0.072 4.072 14 N -0.253 5.253 15 C -0.010 4.010 16 H 0.087 0.913 17 C -0.238 4.238 18 C -0.041 4.041 19 C -0.525 4.525 20 H 0.055 0.945 21 C -0.195 4.195 22 N -0.600 5.600 23 Si 0.763 3.237 24 H -0.198 1.198 25 H -0.218 1.218 26 H -0.170 1.170 27 C -0.036 4.036 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.121 0.879 31 H 0.265 0.735 32 H 0.174 0.826 33 H 0.181 0.819 34 H 0.165 0.835 35 H 0.136 0.864 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.035 0.965 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.957 11.108 -12.457 18.082 hybrid contribution -0.124 0.078 1.810 1.815 sum 6.834 11.186 -10.647 16.888 Atomic orbital electron populations 1.21668 0.77279 1.05743 1.02144 1.55020 1.16932 1.23766 1.91688 1.00983 0.72352 0.72670 0.73107 1.93522 1.78908 1.69537 1.55247 1.93512 1.32559 1.83696 1.87346 1.30741 1.17527 1.10517 1.19011 1.21185 0.91837 0.91827 1.00422 1.21510 1.01322 1.01771 0.91383 1.21692 0.93134 0.93380 1.00140 1.19949 1.00524 0.96094 0.94636 1.19297 0.92580 0.94576 0.91357 1.21413 1.00971 0.93900 1.00499 1.22092 0.92957 1.02011 0.90127 1.62310 1.43068 1.13901 1.05983 1.21568 0.93287 0.97574 0.88599 0.91325 1.22453 0.98399 1.00855 1.02104 1.19625 0.93946 0.95907 0.94665 1.21274 1.01526 1.24043 1.05630 0.94452 1.25883 0.95723 0.96403 1.01518 1.70074 1.09113 1.40474 1.40333 0.85839 0.79112 0.78670 0.80048 1.19794 1.21814 1.17023 1.20994 1.00627 0.88340 0.93650 0.92533 0.90749 0.87865 0.73461 0.82606 0.81894 0.83469 0.86434 0.88545 0.89500 0.93603 0.92089 0.91440 0.91779 0.95995 0.96505 0.93175 0.90487 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 11.13 127.77 1.42 2.74 16 2 N -1.11 -21.09 5.54 -206.53 -1.14 -22.24 16 3 S 2.72 65.94 5.03 -56.49 -0.28 65.66 16 4 O -0.98 -27.16 16.71 -128.00 -2.14 -29.30 16 5 O -0.98 -27.68 15.46 -128.00 -1.98 -29.66 16 6 C -0.69 -17.99 5.89 22.36 0.13 -17.86 16 7 C -0.03 -0.77 9.54 22.22 0.21 -0.56 16 8 C -0.14 -2.99 10.05 22.22 0.22 -2.77 16 9 C -0.07 -1.60 9.65 22.33 0.22 -1.38 16 10 C -0.11 -3.31 5.79 -19.90 -0.12 -3.43 16 11 C 0.02 0.69 5.77 -19.85 -0.11 0.57 16 12 C -0.13 -3.66 4.90 29.82 0.15 -3.51 16 13 C 0.06 1.64 5.01 86.22 0.43 2.07 16 14 N -0.53 -18.63 4.35 -875.87 -3.81 -22.44 16 15 C 0.10 3.53 2.25 44.92 0.10 3.63 16 16 H 0.07 2.59 7.89 -2.39 -0.02 2.58 16 17 C -0.18 -4.97 8.43 71.98 0.61 -4.36 16 18 C 0.00 -0.17 3.45 29.85 0.10 -0.07 16 19 C -0.49 -26.98 9.39 25.60 0.24 -26.74 16 20 H 0.04 2.33 7.99 -2.91 -0.02 2.30 16 21 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 22 N -0.96 -59.74 13.96 21.45 0.30 -59.44 16 23 Si 0.94 43.62 27.47 68.60 1.88 45.51 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.25 -10.52 6.54 99.48 0.65 -9.86 16 27 C 0.09 2.92 4.49 85.58 0.38 3.30 16 28 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.43 6.47 8.96 -96.75 -0.87 5.60 16 32 H 0.16 3.01 7.32 -2.91 -0.02 2.99 16 33 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 34 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.12 3.05 5.33 -2.38 -0.01 3.04 16 36 H 0.10 2.67 7.82 -2.38 -0.02 2.65 16 37 H 0.09 2.41 7.85 -2.39 -0.02 2.39 16 38 H 0.05 1.23 7.25 -2.39 -0.02 1.21 16 39 H 0.06 1.61 6.23 -2.39 -0.01 1.60 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 1.56 7.04 -2.39 -0.02 1.54 16 42 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 43 H 0.02 0.73 5.87 -2.38 -0.01 0.71 16 44 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.08 2.73 6.55 -2.38 -0.02 2.72 16 46 H 0.06 1.77 5.92 -2.39 -0.01 1.76 16 Total: -1.00 -74.50 366.69 -2.64 -77.14 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.08 Total: 22.69 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 4.45 Total: -47.92 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -4.65 Total: -104.12 kcal Atomic # 8 Polarization: -54.84 SS G_CDS: -4.12 Total: -58.96 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.88 Total: 45.51 kcal Atomic # 16 Polarization: 65.94 SS G_CDS: -0.28 Total: 65.66 kcal Total: -74.50 -2.64 -77.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298579209.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.785 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds