Wall clock time and date at job start Tue Mar 31 2020 20:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47066 * 2 1 4 4 C 1.50705 * 109.47230 * 240.00090 * 2 1 3 5 5 H 1.07994 * 119.99854 * 245.64143 * 4 2 1 6 6 C 1.37874 * 119.99796 * 65.63615 * 4 2 1 7 7 N 1.31519 * 119.99904 * 196.46314 * 6 4 2 8 8 Si 1.86801 * 120.00065 * 16.74310 * 6 4 2 9 9 H 1.48501 * 109.47016 * 179.72190 * 8 6 4 10 10 H 1.48492 * 109.47136 * 299.72222 * 8 6 4 11 11 H 1.48497 * 109.47141 * 59.72690 * 8 6 4 12 12 N 1.46504 * 109.47250 * 120.00137 * 2 1 3 13 13 C 1.46494 * 119.99893 * 59.99578 * 12 2 1 14 14 S 1.65603 * 119.99697 * 240.00153 * 12 2 1 15 15 O 1.42099 * 106.39905 * 203.53738 * 14 12 2 16 16 O 1.42104 * 106.40475 * 336.45940 * 14 12 2 17 17 N 1.65596 * 107.21966 * 89.99999 * 14 12 2 18 18 C 1.46500 * 120.00345 * 89.99713 * 17 14 12 19 19 C 1.46507 * 119.99944 * 270.00194 * 17 14 12 20 20 C 1.54348 * 110.81963 * 232.96872 * 19 17 14 21 21 C 1.51361 * 105.17136 * 215.42384 * 20 19 17 22 22 C 1.38494 * 130.39334 * 197.19145 * 21 20 19 23 23 C 1.38108 * 120.21657 * 180.02562 * 22 21 20 24 24 C 1.38247 * 119.93330 * 359.97438 * 23 22 21 25 25 C 1.38097 * 119.94048 * 359.97438 * 24 23 22 26 26 C 1.38227 * 109.75862 * 17.18785 * 21 20 19 27 27 C 1.51367 * 109.75498 * 0.02562 * 26 21 20 28 28 H 1.09005 * 109.47481 * 65.73532 * 1 2 3 29 29 H 1.09002 * 109.47372 * 185.73454 * 1 2 3 30 30 H 1.08998 * 109.47184 * 305.73550 * 1 2 3 31 31 H 0.97001 * 119.99678 * 355.16850 * 7 6 4 32 32 H 1.09008 * 109.46724 * 90.00496 * 13 12 2 33 33 H 1.09003 * 109.47019 * 209.99644 * 13 12 2 34 34 H 1.08998 * 109.47608 * 330.00716 * 13 12 2 35 35 H 1.08996 * 109.46992 * 89.99823 * 18 17 14 36 36 H 1.08997 * 109.47235 * 210.00409 * 18 17 14 37 37 H 1.09004 * 109.46776 * 329.99917 * 18 17 14 38 38 H 1.08999 * 110.72975 * 356.58525 * 19 17 14 39 39 H 1.08997 * 110.30170 * 334.34893 * 20 19 17 40 40 H 1.08998 * 110.30481 * 96.50040 * 20 19 17 41 41 H 1.08001 * 119.88985 * 359.97438 * 22 21 20 42 42 H 1.08000 * 120.02992 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.03214 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.89896 * 180.02562 * 25 24 23 45 45 H 1.09003 * 110.29902 * 223.88600 * 27 26 21 46 46 H 1.08996 * 110.38593 * 101.77775 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5760 -1.6385 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9363 -0.9239 -3.5520 8 14 1.2905 1.6144 -2.6486 9 1 1.1071 1.9432 -4.0850 10 1 0.0146 1.8381 -1.9227 11 1 2.3469 2.4848 -2.0727 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.7118 -0.8789 2.9814 16 8 3.5794 1.1831 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.5813 0.0698 4.6064 19 6 1.4468 2.1630 3.1783 20 6 1.7294 3.0637 4.3995 21 6 0.5300 3.9813 4.5010 22 6 0.3688 5.1755 5.1836 23 6 -0.8358 5.8490 5.1312 24 6 -1.8845 5.3304 4.3947 25 6 -1.7255 4.1404 3.7124 26 6 -0.5186 3.4629 3.7645 27 6 -0.0956 2.1611 3.1183 28 1 -0.3634 0.4223 -0.9369 29 1 -0.3634 -1.0225 0.1027 30 1 -0.3633 0.6002 0.8342 31 1 2.2708 -1.8307 -3.4706 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2852 2.5002 34 1 0.6904 -2.3002 0.9846 35 1 2.2999 0.2757 5.3996 36 1 0.5873 0.3823 4.9264 37 1 1.5743 -0.9986 4.3907 38 1 1.8698 2.5925 2.2702 39 1 1.8207 2.4594 5.3020 40 1 2.6376 3.6446 4.2389 41 1 1.1876 5.5809 5.7596 42 1 -0.9583 6.7798 5.6650 43 1 -2.8273 5.8556 4.3529 44 1 -2.5452 3.7361 3.1368 45 1 -0.4333 2.1259 2.0825 46 1 -0.4954 1.3135 3.6748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330423295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:57 Heat of formation + Delta-G solvation = -39.784003 kcal Electronic energy + Delta-G solvation = -28858.996572 eV Core-core repulsion = 25068.540405 eV Total energy + Delta-G solvation = -3790.456167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35105 -37.20408 -36.87425 -36.39095 -35.37382 -33.60710 -32.57765 -31.55917 -29.87277 -28.59831 -27.44250 -26.26364 -25.74638 -24.62957 -22.40468 -21.09003 -20.94391 -20.32584 -18.62110 -17.68200 -17.50112 -16.90931 -16.49080 -16.03974 -15.46855 -15.21371 -14.98790 -14.31297 -14.00216 -13.70226 -13.60040 -13.41133 -13.30717 -13.06371 -12.93952 -12.83555 -12.76048 -12.49318 -12.17170 -12.06877 -11.77031 -11.65426 -11.63814 -11.57906 -11.34929 -11.30423 -11.22402 -11.08477 -10.91595 -10.80552 -10.44724 -10.01007 -9.77028 -9.16565 -9.05627 -8.91992 -8.62021 -8.42727 -8.08576 -6.49196 -4.12936 0.96592 1.21512 1.25523 3.22373 3.32053 3.46039 3.57446 3.61575 3.88838 4.26593 4.43965 4.46277 4.61451 4.86465 4.87238 4.93542 4.96590 5.02316 5.09657 5.19068 5.34680 5.39622 5.48563 5.51144 5.56046 5.63690 5.65886 5.70420 5.79096 5.95019 5.97941 6.00129 6.17288 6.20389 6.29002 6.35720 6.36257 6.38192 6.47634 6.51970 6.53133 6.63395 6.86346 6.94069 7.28256 7.45603 7.93996 8.34569 8.86828 9.55787 10.89245 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.004632 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.674969 B = 6042.804919 C = 7428.632736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.245 3.755 3 H 0.046 0.954 4 C -0.604 4.604 5 H 0.064 0.936 6 C 0.035 3.965 7 N -0.902 5.902 8 Si 1.032 2.968 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.275 1.275 12 N -0.983 5.983 13 C 0.112 3.888 14 S 2.775 3.225 15 O -0.987 6.987 16 O -0.971 6.971 17 N -1.006 6.006 18 C 0.094 3.906 19 C 0.149 3.851 20 C -0.091 4.091 21 C -0.093 4.093 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.106 4.106 26 C -0.089 4.089 27 C -0.100 4.100 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.027 0.973 31 H 0.268 0.732 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.087 0.913 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 8.608 19.025 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.141 3.859 3 H 0.064 0.936 4 C -0.643 4.643 5 H 0.082 0.918 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.201 1.201 12 N -0.825 5.825 13 C -0.035 4.035 14 S 2.785 3.215 15 O -0.971 6.971 16 O -0.955 6.955 17 N -0.843 5.843 18 C -0.052 4.052 19 C 0.042 3.958 20 C -0.130 4.130 21 C -0.093 4.093 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.089 4.089 27 C -0.138 4.138 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.105 0.895 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.247 9.760 17.917 21.652 hybrid contribution -0.022 -1.253 1.126 1.685 sum -7.269 8.506 19.043 22.087 Atomic orbital electron populations 1.22608 0.98727 1.00752 1.00234 1.18979 0.90787 0.92996 0.83162 0.93626 1.22166 1.40852 1.10600 0.90721 0.91811 1.25677 0.94754 1.04769 0.91914 1.70860 1.41251 1.10272 1.31182 0.84256 0.77432 0.75768 0.76576 1.20785 1.19804 1.20098 1.57558 1.70047 1.19868 1.35023 1.21160 1.01808 0.81787 0.98703 1.02213 0.73817 0.73117 0.72342 1.93547 1.68825 1.60212 1.74502 1.93589 1.73780 1.55905 1.72177 1.58221 1.67404 1.23579 1.35071 1.21393 1.00911 0.95776 0.87115 1.21498 0.93447 0.81562 0.99255 1.21391 0.96280 0.96166 0.99145 1.20519 0.96066 0.95154 0.97589 1.20610 0.97702 0.94413 0.99786 1.21008 0.93252 0.99931 0.99911 1.21020 0.98991 0.96081 0.97869 1.20655 0.96636 0.95224 0.99866 1.20537 0.93932 0.96511 0.97962 1.21564 0.95567 0.94751 1.01956 0.91659 0.92970 0.95419 0.92139 0.93137 0.93209 0.90930 0.92634 0.91100 0.91105 0.86607 0.89294 0.89979 0.86309 0.86063 0.86018 0.86138 0.89454 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.95 37.16 0.33 -2.91 16 2 C 0.25 5.58 2.20 -69.08 -0.15 5.43 16 3 H 0.05 1.09 5.58 -51.92 -0.29 0.80 16 4 C -0.60 -16.47 8.68 -34.44 -0.30 -16.77 16 5 H 0.06 1.88 7.75 -52.49 -0.41 1.47 16 6 C 0.04 0.99 5.31 -17.82 -0.09 0.89 16 7 N -0.90 -27.10 13.70 55.43 0.76 -26.34 16 8 Si 1.03 24.59 26.28 -169.99 -4.47 20.13 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.27 -5.73 5.70 56.52 0.32 -5.41 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.98 -19.62 3.12 -115.85 -0.36 -19.98 16 13 C 0.11 1.94 9.47 59.84 0.57 2.51 16 14 S 2.77 52.79 6.01 -107.50 -0.65 52.14 16 15 O -0.99 -20.04 16.28 -57.17 -0.93 -20.97 16 16 O -0.97 -21.67 15.28 -57.17 -0.87 -22.54 16 17 N -1.01 -14.21 3.26 -113.09 -0.37 -14.58 16 18 C 0.09 1.02 8.86 59.85 0.53 1.55 16 19 C 0.15 2.00 3.51 -66.51 -0.23 1.77 16 20 C -0.09 -1.03 6.38 -26.85 -0.17 -1.20 16 21 C -0.09 -1.05 6.14 -104.21 -0.64 -1.69 16 22 C -0.11 -1.07 10.04 -39.53 -0.40 -1.47 16 23 C -0.12 -1.13 10.05 -39.63 -0.40 -1.53 16 24 C -0.12 -1.14 10.04 -39.63 -0.40 -1.54 16 25 C -0.11 -1.11 10.04 -39.54 -0.40 -1.51 16 26 C -0.09 -1.03 6.14 -104.20 -0.64 -1.67 16 27 C -0.10 -1.19 6.29 -26.84 -0.17 -1.36 16 28 H 0.06 1.37 4.79 -51.93 -0.25 1.12 16 29 H 0.05 0.99 6.45 -51.93 -0.33 0.65 16 30 H 0.03 0.45 6.50 -51.93 -0.34 0.11 16 31 H 0.27 8.04 8.73 -40.82 -0.36 7.69 16 32 H 0.05 0.93 8.09 -51.92 -0.42 0.51 16 33 H 0.05 0.70 7.37 -51.93 -0.38 0.32 16 34 H 0.07 1.20 6.33 -51.93 -0.33 0.88 16 35 H 0.06 0.55 7.93 -51.93 -0.41 0.13 16 36 H 0.07 0.62 6.48 -51.93 -0.34 0.29 16 37 H 0.07 0.75 7.37 -51.93 -0.38 0.37 16 38 H 0.12 1.76 6.96 -51.93 -0.36 1.40 16 39 H 0.09 0.89 6.77 -51.93 -0.35 0.54 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 44 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.09 1.09 6.55 -51.93 -0.34 0.75 16 46 H 0.09 0.97 6.37 -51.93 -0.33 0.64 16 LS Contribution 366.35 15.07 5.52 5.52 Total: -1.00 -33.20 366.35 -10.54 -43.74 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.61 Total: 2.37 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.56 Total: -19.50 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: 0.03 Total: -60.90 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.80 Total: -43.51 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -4.47 Total: 20.13 kcal Atomic # 16 Polarization: 52.79 SS G_CDS: -0.65 Total: 52.14 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.20 -10.54 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.956 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds