Wall clock time and date at job start Tue Mar 31 2020 20:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47066 * 2 1 4 4 C 1.50705 * 109.47230 * 240.00090 * 2 1 3 5 5 H 1.07994 * 119.99854 * 245.64143 * 4 2 1 6 6 C 1.37874 * 119.99796 * 65.63615 * 4 2 1 7 7 N 1.31519 * 119.99904 * 196.46314 * 6 4 2 8 8 Si 1.86801 * 120.00065 * 16.74310 * 6 4 2 9 9 H 1.48501 * 109.47016 * 179.72190 * 8 6 4 10 10 H 1.48492 * 109.47136 * 299.72222 * 8 6 4 11 11 H 1.48497 * 109.47141 * 59.72690 * 8 6 4 12 12 N 1.46504 * 109.47250 * 120.00137 * 2 1 3 13 13 C 1.46494 * 119.99893 * 59.99578 * 12 2 1 14 14 S 1.65603 * 119.99697 * 240.00153 * 12 2 1 15 15 O 1.42099 * 106.39905 * 203.53738 * 14 12 2 16 16 O 1.42104 * 106.40475 * 336.45940 * 14 12 2 17 17 N 1.65596 * 107.21966 * 89.99999 * 14 12 2 18 18 C 1.46500 * 120.00345 * 89.99713 * 17 14 12 19 19 C 1.46507 * 119.99944 * 270.00194 * 17 14 12 20 20 C 1.54348 * 110.81963 * 232.96872 * 19 17 14 21 21 C 1.51361 * 105.17136 * 215.42384 * 20 19 17 22 22 C 1.38494 * 130.39334 * 197.19145 * 21 20 19 23 23 C 1.38108 * 120.21657 * 180.02562 * 22 21 20 24 24 C 1.38247 * 119.93330 * 359.97438 * 23 22 21 25 25 C 1.38097 * 119.94048 * 359.97438 * 24 23 22 26 26 C 1.38227 * 109.75862 * 17.18785 * 21 20 19 27 27 C 1.51367 * 109.75498 * 0.02562 * 26 21 20 28 28 H 1.09005 * 109.47481 * 65.73532 * 1 2 3 29 29 H 1.09002 * 109.47372 * 185.73454 * 1 2 3 30 30 H 1.08998 * 109.47184 * 305.73550 * 1 2 3 31 31 H 0.97001 * 119.99678 * 355.16850 * 7 6 4 32 32 H 1.09008 * 109.46724 * 90.00496 * 13 12 2 33 33 H 1.09003 * 109.47019 * 209.99644 * 13 12 2 34 34 H 1.08998 * 109.47608 * 330.00716 * 13 12 2 35 35 H 1.08996 * 109.46992 * 89.99823 * 18 17 14 36 36 H 1.08997 * 109.47235 * 210.00409 * 18 17 14 37 37 H 1.09004 * 109.46776 * 329.99917 * 18 17 14 38 38 H 1.08999 * 110.72975 * 356.58525 * 19 17 14 39 39 H 1.08997 * 110.30170 * 334.34893 * 20 19 17 40 40 H 1.08998 * 110.30481 * 96.50040 * 20 19 17 41 41 H 1.08001 * 119.88985 * 359.97438 * 22 21 20 42 42 H 1.08000 * 120.02992 * 179.97438 * 23 22 21 43 43 H 1.07999 * 120.03214 * 179.97438 * 24 23 22 44 44 H 1.08003 * 119.89896 * 180.02562 * 25 24 23 45 45 H 1.09003 * 110.29902 * 223.88600 * 27 26 21 46 46 H 1.08996 * 110.38593 * 101.77775 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5760 -1.6385 -1.1340 6 6 1.7977 -0.1755 -2.4794 7 7 1.9363 -0.9239 -3.5520 8 14 1.2905 1.6144 -2.6486 9 1 1.1071 1.9432 -4.0850 10 1 0.0146 1.8381 -1.9227 11 1 2.3469 2.4848 -2.0727 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.7118 -0.8789 2.9814 16 8 3.5794 1.1831 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.5813 0.0698 4.6064 19 6 1.4468 2.1630 3.1783 20 6 1.7294 3.0637 4.3995 21 6 0.5300 3.9813 4.5010 22 6 0.3688 5.1755 5.1836 23 6 -0.8358 5.8490 5.1312 24 6 -1.8845 5.3304 4.3947 25 6 -1.7255 4.1404 3.7124 26 6 -0.5186 3.4629 3.7645 27 6 -0.0956 2.1611 3.1183 28 1 -0.3634 0.4223 -0.9369 29 1 -0.3634 -1.0225 0.1027 30 1 -0.3633 0.6002 0.8342 31 1 2.2708 -1.8307 -3.4706 32 1 2.4157 -2.7377 0.9716 33 1 1.6238 -2.2852 2.5002 34 1 0.6904 -2.3002 0.9846 35 1 2.2999 0.2757 5.3996 36 1 0.5873 0.3823 4.9264 37 1 1.5743 -0.9986 4.3907 38 1 1.8698 2.5925 2.2702 39 1 1.8207 2.4594 5.3020 40 1 2.6376 3.6446 4.2389 41 1 1.1876 5.5809 5.7596 42 1 -0.9583 6.7798 5.6650 43 1 -2.8273 5.8556 4.3529 44 1 -2.5452 3.7361 3.1368 45 1 -0.4333 2.1259 2.0825 46 1 -0.4954 1.3135 3.6748 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330423295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:57 Heat of formation + Delta-G solvation = -61.932394 kcal Electronic energy + Delta-G solvation = -28859.956999 eV Core-core repulsion = 25068.540405 eV Total energy + Delta-G solvation = -3791.416594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16149 -38.52586 -38.10787 -38.03319 -36.98665 -34.63626 -34.51713 -32.30402 -31.60430 -29.44937 -28.26240 -27.44059 -27.05516 -26.56205 -23.27050 -22.47372 -21.79814 -21.55025 -19.93432 -19.62179 -18.99446 -18.51787 -17.48090 -17.05992 -16.44198 -16.33409 -16.02337 -15.83122 -15.42194 -15.10522 -15.03003 -14.57766 -14.45469 -14.14473 -14.03424 -13.85654 -13.76657 -13.70672 -13.65940 -13.50527 -13.44932 -13.30508 -12.98118 -12.96965 -12.67115 -12.48183 -12.34722 -12.23189 -12.04578 -11.99692 -11.79041 -11.64462 -11.53604 -11.14907 -10.46631 -10.13054 -9.84794 -9.66143 -9.37753 -8.70933 -6.36771 -0.50889 0.47835 0.52797 1.41956 1.54951 1.68697 1.89015 2.43364 2.45800 2.88823 3.07050 3.21143 3.42554 3.50290 3.88910 4.00612 4.05454 4.09757 4.11799 4.23367 4.32779 4.44364 4.59080 4.63367 4.64081 4.68528 4.70888 4.73004 4.76730 4.82389 4.83598 4.89304 4.97385 4.99898 5.04078 5.18938 5.22589 5.29752 5.32465 5.49270 5.59839 5.64533 5.66849 5.76541 5.83670 5.97642 6.05355 6.16120 6.60693 7.40359 8.64301 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012253 B = 0.004632 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.674969 B = 6042.804919 C = 7428.632736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.246 3.754 3 H 0.038 0.962 4 C -0.605 4.605 5 H 0.025 0.975 6 C -0.014 4.014 7 N -0.935 5.935 8 Si 1.060 2.940 9 H -0.285 1.285 10 H -0.222 1.222 11 H -0.275 1.275 12 N -0.993 5.993 13 C 0.107 3.893 14 S 2.787 3.213 15 O -1.004 7.004 16 O -1.011 7.011 17 N -0.992 5.992 18 C 0.083 3.917 19 C 0.141 3.859 20 C -0.085 4.085 21 C -0.107 4.107 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.105 4.105 27 C -0.094 4.094 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.252 0.748 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.134 0.866 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 10.545 21.955 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.141 3.859 3 H 0.056 0.944 4 C -0.645 4.645 5 H 0.044 0.956 6 C -0.213 4.213 7 N -0.571 5.571 8 Si 0.881 3.119 9 H -0.211 1.211 10 H -0.145 1.145 11 H -0.201 1.201 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.798 3.202 15 O -0.988 6.988 16 O -0.994 6.994 17 N -0.832 5.832 18 C -0.061 4.061 19 C 0.034 3.966 20 C -0.124 4.124 21 C -0.108 4.108 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.142 4.142 25 C -0.135 4.135 26 C -0.106 4.106 27 C -0.132 4.132 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.151 0.849 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.150 0.850 45 H 0.099 0.901 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.729 11.663 20.874 25.815 hybrid contribution 0.814 -1.875 0.346 2.073 sum -8.915 9.787 21.220 25.011 Atomic orbital electron populations 1.22446 0.95779 1.01993 1.01331 1.18783 0.92856 0.91996 0.82298 0.94406 1.22421 1.39650 1.09265 0.93130 0.95615 1.26985 0.94664 1.07886 0.91798 1.70985 1.43941 1.09892 1.32329 0.83952 0.79596 0.71266 0.77069 1.21096 1.14543 1.20051 1.57510 1.70060 1.20953 1.34824 1.21316 1.01358 0.80213 1.00990 1.01581 0.73901 0.72365 0.72372 1.93517 1.69730 1.60885 1.74639 1.93532 1.75235 1.57102 1.73572 1.57756 1.66849 1.23886 1.34749 1.21736 1.02874 0.95752 0.85787 1.21585 0.94615 0.81009 0.99391 1.21327 0.96443 0.96023 0.98616 1.20585 0.95839 0.95867 0.98480 1.20878 0.98691 0.94059 0.99753 1.21359 0.92755 1.00603 0.99538 1.21359 1.00042 0.95723 0.97120 1.20891 0.96632 0.95687 1.00247 1.20585 0.94651 0.96669 0.98668 1.21486 0.94007 0.95840 1.01887 0.92621 0.92369 0.91535 0.93836 0.95450 0.89535 0.90108 0.91329 0.88284 0.90663 0.89025 0.87855 0.90250 0.84855 0.83685 0.83774 0.85042 0.90142 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 8.95 71.98 0.64 -5.18 16 2 C 0.25 11.11 2.20 44.24 0.10 11.20 16 3 H 0.04 1.79 5.58 -2.38 -0.01 1.78 16 4 C -0.61 -33.94 8.68 25.60 0.22 -33.72 16 5 H 0.03 1.59 7.75 -2.91 -0.02 1.57 16 6 C -0.01 -0.82 5.31 84.65 0.45 -0.37 16 7 N -0.94 -58.30 13.70 21.45 0.29 -58.01 16 8 Si 1.06 49.18 26.28 68.60 1.80 50.98 16 9 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.22 -8.52 5.70 99.48 0.57 -7.95 16 11 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 12 N -0.99 -39.16 3.12 -520.43 -1.62 -40.79 16 13 C 0.11 3.64 9.47 127.77 1.21 4.85 16 14 S 2.79 104.66 6.01 -56.49 -0.34 104.32 16 15 O -1.00 -40.18 16.28 -128.00 -2.08 -42.26 16 16 O -1.01 -45.76 15.28 -128.00 -1.96 -47.72 16 17 N -0.99 -26.03 3.26 -511.71 -1.67 -27.70 16 18 C 0.08 1.52 8.86 127.77 1.13 2.66 16 19 C 0.14 3.51 3.51 45.91 0.16 3.67 16 20 C -0.09 -1.75 6.38 30.52 0.19 -1.56 16 21 C -0.11 -2.17 6.14 -19.60 -0.12 -2.29 16 22 C -0.12 -2.00 10.04 22.30 0.22 -1.77 16 23 C -0.12 -1.87 10.05 22.24 0.22 -1.64 16 24 C -0.12 -1.91 10.04 22.24 0.22 -1.69 16 25 C -0.12 -2.10 10.04 22.30 0.22 -1.88 16 26 C -0.11 -2.16 6.14 -19.59 -0.12 -2.28 16 27 C -0.09 -1.98 6.29 30.52 0.19 -1.78 16 28 H 0.06 2.17 4.79 -2.38 -0.01 2.16 16 29 H 0.06 2.08 6.45 -2.39 -0.02 2.06 16 30 H 0.07 1.95 6.50 -2.39 -0.02 1.94 16 31 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 32 H 0.03 1.03 8.09 -2.38 -0.02 1.01 16 33 H 0.09 2.28 7.37 -2.39 -0.02 2.26 16 34 H 0.08 2.59 6.33 -2.39 -0.02 2.58 16 35 H 0.07 1.12 7.93 -2.39 -0.02 1.10 16 36 H 0.10 1.31 6.48 -2.39 -0.02 1.29 16 37 H 0.07 1.35 7.37 -2.39 -0.02 1.33 16 38 H 0.09 2.75 6.96 -2.39 -0.02 2.74 16 39 H 0.10 1.78 6.77 -2.39 -0.02 1.76 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 43 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 44 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.08 1.78 6.55 -2.39 -0.02 1.77 16 46 H 0.11 1.85 6.37 -2.39 -0.02 1.83 16 Total: -1.00 -75.05 366.35 0.20 -74.86 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.81 Total: 18.09 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 4.96 Total: -31.78 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -3.00 Total: -126.49 kcal Atomic # 8 Polarization: -85.94 SS G_CDS: -4.04 Total: -89.98 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 1.80 Total: 50.98 kcal Atomic # 16 Polarization: 104.66 SS G_CDS: -0.34 Total: 104.32 kcal Total: -75.05 0.20 -74.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.925 kcal (2) G-P(sol) polarization free energy of solvation -75.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds