Wall clock time and date at job start Tue Mar 31 2020 20:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47544 * 2 1 4 4 C 1.50706 * 109.47384 * 119.99726 * 2 1 3 5 5 H 1.07999 * 119.99693 * 119.99329 * 4 2 1 6 6 C 1.37881 * 119.99909 * 300.00402 * 4 2 1 7 7 N 1.31511 * 119.99804 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99803 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47030 * 119.99650 * 8 6 4 11 11 H 1.48500 * 109.47283 * 239.99902 * 8 6 4 12 12 N 1.46497 * 109.47339 * 239.99701 * 2 1 3 13 13 C 1.46499 * 120.00117 * 300.00295 * 12 2 1 14 14 S 1.65608 * 120.00164 * 119.99905 * 12 2 1 15 15 O 1.42104 * 106.39724 * 23.54333 * 14 12 2 16 16 O 1.42097 * 106.40199 * 156.46245 * 14 12 2 17 17 N 1.65601 * 107.21642 * 270.00708 * 14 12 2 18 18 C 1.46499 * 120.00284 * 90.00037 * 17 14 12 19 19 C 1.46507 * 119.99820 * 269.99450 * 17 14 12 20 20 C 1.54342 * 110.82289 * 232.97514 * 19 17 14 21 21 C 1.51369 * 105.16903 * 215.42486 * 20 19 17 22 22 C 1.38495 * 130.39339 * 197.18466 * 21 20 19 23 23 C 1.38103 * 120.21634 * 180.02562 * 22 21 20 24 24 C 1.38251 * 119.93410 * 0.02562 * 23 22 21 25 25 C 1.38103 * 119.93533 * 0.02562 * 24 23 22 26 26 C 1.38220 * 109.75631 * 17.19244 * 21 20 19 27 27 C 1.51368 * 109.75981 * 359.97438 * 26 21 20 28 28 H 1.08998 * 109.47544 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47074 * 300.00140 * 1 2 3 30 30 H 1.08998 * 109.46861 * 59.99849 * 1 2 3 31 31 H 0.96998 * 119.99785 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47332 * 269.99875 * 13 12 2 33 33 H 1.09003 * 109.46893 * 29.99693 * 13 12 2 34 34 H 1.08998 * 109.47249 * 149.99261 * 13 12 2 35 35 H 1.09001 * 109.46990 * 89.99721 * 18 17 14 36 36 H 1.08997 * 109.46771 * 209.99666 * 18 17 14 37 37 H 1.08998 * 109.47122 * 329.99543 * 18 17 14 38 38 H 1.09001 * 110.72797 * 356.60249 * 19 17 14 39 39 H 1.08995 * 110.30122 * 334.34901 * 20 19 17 40 40 H 1.08996 * 110.30474 * 96.50778 * 20 19 17 41 41 H 1.07994 * 119.88871 * 0.02562 * 22 21 20 42 42 H 1.08007 * 120.03032 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.03131 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.89046 * 180.02562 * 25 24 23 45 45 H 1.08997 * 110.30255 * 223.88849 * 27 26 21 46 46 H 1.08997 * 110.38550 * 101.78255 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1466 -2.2868 3.6038 10 1 3.1467 -0.1871 4.8165 11 1 1.1661 -1.5866 4.8162 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2863 15 8 3.5794 1.1829 -1.5748 16 8 3.7118 -0.8790 -2.9814 17 7 1.9607 0.8090 -3.3998 18 6 1.4469 2.1630 -3.1784 19 6 1.5812 0.0697 -4.6064 20 6 1.8682 0.9031 -5.8734 21 6 0.7497 0.5612 -6.8342 22 6 0.6530 0.7499 -8.2028 23 6 -0.4828 0.3528 -8.8807 24 6 -1.5274 -0.2347 -8.1916 25 6 -1.4334 -0.4228 -6.8267 26 6 -0.2944 -0.0270 -6.1454 27 6 0.0514 -0.1212 -4.6747 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7094 1.1618 3.4844 32 1 2.4157 -2.7378 -0.9716 33 1 0.6904 -2.3002 -0.9845 34 1 1.6237 -2.2853 -2.5001 35 1 2.1322 2.8879 -3.6175 36 1 0.4668 2.2604 -3.6452 37 1 1.3594 2.3478 -2.1077 38 1 2.0935 -0.8916 -4.6469 39 1 1.8524 1.9672 -5.6377 40 1 2.8316 0.6236 -6.2998 41 1 1.4685 1.2092 -8.7416 42 1 -0.5551 0.5018 -9.9480 43 1 -2.4166 -0.5455 -8.7201 44 1 -2.2498 -0.8823 -6.2892 45 1 -0.2260 -1.0997 -4.2829 46 1 -0.4529 0.6665 -4.1149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330423300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:00 Heat of formation + Delta-G solvation = -42.132966 kcal Electronic energy + Delta-G solvation = -28479.819879 eV Core-core repulsion = 24689.261853 eV Total energy + Delta-G solvation = -3790.558026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34721 -37.14673 -36.73765 -36.16336 -35.24344 -33.52840 -32.59128 -31.56654 -29.12666 -28.54260 -27.43009 -26.05589 -25.60168 -25.14588 -22.37844 -21.08520 -20.87330 -20.48430 -18.51924 -17.54233 -16.93005 -16.47143 -16.33138 -15.91574 -15.41729 -15.23400 -14.96484 -14.40390 -13.92705 -13.65614 -13.44984 -13.35470 -13.25697 -12.93308 -12.91455 -12.79540 -12.69449 -12.32246 -11.97628 -11.75390 -11.58320 -11.49426 -11.38258 -11.33688 -11.26014 -11.19472 -11.01856 -10.99288 -10.92006 -10.80584 -10.45943 -10.28423 -10.03054 -9.27619 -8.99163 -8.87733 -8.62958 -8.46812 -7.97617 -6.08881 -4.15036 1.11530 1.20364 1.24233 3.26980 3.34755 3.35865 3.40470 3.60433 4.01021 4.26765 4.39254 4.50429 4.71627 4.85641 4.86439 4.96860 5.00934 5.07625 5.20080 5.22906 5.36639 5.47835 5.53989 5.60823 5.65797 5.71293 5.72889 5.76089 5.94763 6.00305 6.03114 6.13357 6.22039 6.29957 6.34725 6.39835 6.52178 6.59202 6.67661 6.76471 6.82138 6.85018 6.99957 7.44806 7.62245 7.77402 8.02543 8.26296 8.87595 9.50943 10.96873 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022189 B = 0.003213 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.569953 B = 8711.505282 C = 9132.760506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.989 5.989 13 C 0.111 3.889 14 S 2.776 3.224 15 O -0.969 6.969 16 O -0.993 6.993 17 N -1.005 6.005 18 C 0.092 3.908 19 C 0.151 3.849 20 C -0.092 4.092 21 C -0.092 4.092 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.107 4.107 26 C -0.090 4.090 27 C -0.098 4.098 28 H 0.033 0.967 29 H 0.092 0.908 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.082 0.918 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 -0.169 -19.531 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.832 5.832 13 C -0.036 4.036 14 S 2.786 3.214 15 O -0.953 6.953 16 O -0.977 6.977 17 N -0.842 5.842 18 C -0.053 4.053 19 C 0.044 3.956 20 C -0.131 4.131 21 C -0.093 4.093 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.090 4.090 27 C -0.136 4.136 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.100 0.900 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.558 0.028 -19.353 19.883 hybrid contribution -0.296 -0.441 0.815 0.973 sum -4.855 -0.413 -18.538 19.168 Atomic orbital electron populations 1.22114 0.98266 0.99744 1.00573 1.18736 0.91272 0.92929 0.80571 0.92433 1.21378 1.31469 1.12974 0.90030 0.91917 1.24904 0.94965 0.95014 0.99008 1.69860 1.36662 1.22731 1.23680 0.86449 0.78610 0.79701 0.82705 1.19726 1.20894 1.20995 1.57764 1.70001 1.19780 1.35632 1.21134 1.01724 0.82112 0.98626 1.02148 0.73820 0.73119 0.72281 1.93602 1.73788 1.55857 1.72032 1.93525 1.69149 1.60400 1.74665 1.58210 1.67468 1.24689 1.33807 1.21425 0.99288 0.81916 1.02686 1.21429 0.94613 0.95547 0.84002 1.21408 0.97037 1.01470 0.93199 1.20540 0.96396 0.98673 0.93642 1.20617 0.98248 1.00683 0.92997 1.21010 0.93789 0.99634 0.99693 1.21020 0.98892 1.00009 0.94118 1.20648 0.97203 1.00438 0.94172 1.20553 0.94302 0.98356 0.95794 1.21504 0.96275 1.03670 0.92186 0.94776 0.88914 0.97034 0.92762 0.93272 0.90964 0.93492 0.92751 0.91274 0.90278 0.87006 0.89135 0.90090 0.86310 0.86080 0.86051 0.86188 0.89991 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 8.95 37.15 0.33 -2.89 16 2 C 0.27 6.39 2.62 -69.08 -0.18 6.21 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -13.84 8.37 -34.44 -0.29 -14.13 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.44 11.32 55.43 0.63 -23.82 16 8 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.99 -20.16 3.12 -115.86 -0.36 -20.52 16 13 C 0.11 1.94 9.53 59.85 0.57 2.51 16 14 S 2.78 54.11 6.02 -107.50 -0.65 53.46 16 15 O -0.97 -22.35 15.78 -57.17 -0.90 -23.25 16 16 O -0.99 -20.32 15.79 -57.17 -0.90 -21.22 16 17 N -1.01 -14.97 3.26 -113.11 -0.37 -15.34 16 18 C 0.09 1.22 8.86 59.85 0.53 1.75 16 19 C 0.15 1.94 3.50 -66.53 -0.23 1.70 16 20 C -0.09 -1.03 6.38 -26.85 -0.17 -1.21 16 21 C -0.09 -1.01 6.14 -104.21 -0.64 -1.65 16 22 C -0.11 -1.05 10.04 -39.54 -0.40 -1.44 16 23 C -0.12 -1.09 10.05 -39.63 -0.40 -1.49 16 24 C -0.12 -1.09 10.05 -39.63 -0.40 -1.49 16 25 C -0.11 -1.06 10.04 -39.54 -0.40 -1.46 16 26 C -0.09 -1.00 6.14 -104.21 -0.64 -1.64 16 27 C -0.10 -1.12 6.33 -26.86 -0.17 -1.29 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 29 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 34 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 35 H 0.05 0.65 7.93 -51.93 -0.41 0.24 16 36 H 0.07 0.75 6.48 -51.93 -0.34 0.42 16 37 H 0.08 1.18 7.79 -51.93 -0.40 0.78 16 38 H 0.11 1.50 6.96 -51.93 -0.36 1.14 16 39 H 0.09 0.96 6.77 -51.93 -0.35 0.61 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.09 1.06 6.37 -51.93 -0.33 0.73 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -31.54 375.36 -11.37 -42.90 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.87 Total: 1.03 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.57 Total: -14.91 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.10 Total: -59.67 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -1.80 Total: -44.48 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 54.11 SS G_CDS: -0.65 Total: 53.46 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.54 -11.37 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.772 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds