Wall clock time and date at job start Tue Mar 31 2020 20:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47544 * 2 1 4 4 C 1.50706 * 109.47384 * 119.99726 * 2 1 3 5 5 H 1.07999 * 119.99693 * 119.99329 * 4 2 1 6 6 C 1.37881 * 119.99909 * 300.00402 * 4 2 1 7 7 N 1.31511 * 119.99804 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99803 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47200 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47030 * 119.99650 * 8 6 4 11 11 H 1.48500 * 109.47283 * 239.99902 * 8 6 4 12 12 N 1.46497 * 109.47339 * 239.99701 * 2 1 3 13 13 C 1.46499 * 120.00117 * 300.00295 * 12 2 1 14 14 S 1.65608 * 120.00164 * 119.99905 * 12 2 1 15 15 O 1.42104 * 106.39724 * 23.54333 * 14 12 2 16 16 O 1.42097 * 106.40199 * 156.46245 * 14 12 2 17 17 N 1.65601 * 107.21642 * 270.00708 * 14 12 2 18 18 C 1.46499 * 120.00284 * 90.00037 * 17 14 12 19 19 C 1.46507 * 119.99820 * 269.99450 * 17 14 12 20 20 C 1.54342 * 110.82289 * 232.97514 * 19 17 14 21 21 C 1.51369 * 105.16903 * 215.42486 * 20 19 17 22 22 C 1.38495 * 130.39339 * 197.18466 * 21 20 19 23 23 C 1.38103 * 120.21634 * 180.02562 * 22 21 20 24 24 C 1.38251 * 119.93410 * 0.02562 * 23 22 21 25 25 C 1.38103 * 119.93533 * 0.02562 * 24 23 22 26 26 C 1.38220 * 109.75631 * 17.19244 * 21 20 19 27 27 C 1.51368 * 109.75981 * 359.97438 * 26 21 20 28 28 H 1.08998 * 109.47544 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47074 * 300.00140 * 1 2 3 30 30 H 1.08998 * 109.46861 * 59.99849 * 1 2 3 31 31 H 0.96998 * 119.99785 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47332 * 269.99875 * 13 12 2 33 33 H 1.09003 * 109.46893 * 29.99693 * 13 12 2 34 34 H 1.08998 * 109.47249 * 149.99261 * 13 12 2 35 35 H 1.09001 * 109.46990 * 89.99721 * 18 17 14 36 36 H 1.08997 * 109.46771 * 209.99666 * 18 17 14 37 37 H 1.08998 * 109.47122 * 329.99543 * 18 17 14 38 38 H 1.09001 * 110.72797 * 356.60249 * 19 17 14 39 39 H 1.08995 * 110.30122 * 334.34901 * 20 19 17 40 40 H 1.08996 * 110.30474 * 96.50778 * 20 19 17 41 41 H 1.07994 * 119.88871 * 0.02562 * 22 21 20 42 42 H 1.08007 * 120.03032 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.03131 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.89046 * 180.02562 * 25 24 23 45 45 H 1.08997 * 110.30255 * 223.88849 * 27 26 21 46 46 H 1.08997 * 110.38550 * 101.78255 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1466 -2.2868 3.6038 10 1 3.1467 -0.1871 4.8165 11 1 1.1661 -1.5866 4.8162 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9704 0.1141 -2.2863 15 8 3.5794 1.1829 -1.5748 16 8 3.7118 -0.8790 -2.9814 17 7 1.9607 0.8090 -3.3998 18 6 1.4469 2.1630 -3.1784 19 6 1.5812 0.0697 -4.6064 20 6 1.8682 0.9031 -5.8734 21 6 0.7497 0.5612 -6.8342 22 6 0.6530 0.7499 -8.2028 23 6 -0.4828 0.3528 -8.8807 24 6 -1.5274 -0.2347 -8.1916 25 6 -1.4334 -0.4228 -6.8267 26 6 -0.2944 -0.0270 -6.1454 27 6 0.0514 -0.1212 -4.6747 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.7094 1.1618 3.4844 32 1 2.4157 -2.7378 -0.9716 33 1 0.6904 -2.3002 -0.9845 34 1 1.6237 -2.2853 -2.5001 35 1 2.1322 2.8879 -3.6175 36 1 0.4668 2.2604 -3.6452 37 1 1.3594 2.3478 -2.1077 38 1 2.0935 -0.8916 -4.6469 39 1 1.8524 1.9672 -5.6377 40 1 2.8316 0.6236 -6.2998 41 1 1.4685 1.2092 -8.7416 42 1 -0.5551 0.5018 -9.9480 43 1 -2.4166 -0.5455 -8.7201 44 1 -2.2498 -0.8823 -6.2892 45 1 -0.2260 -1.0997 -4.2829 46 1 -0.4529 0.6665 -4.1149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330423300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:00 Heat of formation + Delta-G solvation = -60.858307 kcal Electronic energy + Delta-G solvation = -28480.631870 eV Core-core repulsion = 24689.261853 eV Total energy + Delta-G solvation = -3791.370018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15394 -38.42697 -38.07067 -37.86887 -36.90897 -34.52907 -34.49808 -32.29857 -30.91369 -29.44098 -28.23806 -27.28360 -27.14667 -26.98441 -23.23066 -22.52423 -21.79534 -21.60301 -19.88249 -19.03835 -18.60606 -18.15165 -17.42484 -17.08229 -16.68006 -16.33197 -16.00766 -15.92670 -15.22785 -14.90349 -14.89951 -14.58163 -14.42747 -14.14567 -13.89804 -13.73617 -13.70002 -13.68279 -13.49467 -13.36953 -13.16988 -13.00248 -12.93062 -12.80988 -12.61387 -12.53919 -12.43710 -12.22096 -12.15134 -12.06184 -11.99953 -11.86053 -11.63371 -11.13892 -10.51094 -10.08898 -9.67188 -9.65040 -9.38067 -8.12081 -6.25076 -0.40784 0.47755 0.52572 1.40468 1.43732 1.53915 1.95584 2.41749 2.53294 2.88785 3.16295 3.30929 3.43422 3.52701 3.97362 4.02399 4.09962 4.11851 4.16215 4.23271 4.32776 4.59443 4.64083 4.67649 4.70376 4.72554 4.80133 4.82074 4.83893 4.91449 4.99033 5.00830 5.04332 5.13587 5.15609 5.19597 5.23097 5.33042 5.50382 5.61627 5.62962 5.66531 5.76882 5.81167 5.88900 6.14974 6.15917 6.31293 6.82473 7.43841 8.92080 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022189 B = 0.003213 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.569953 B = 8711.505282 C = 9132.760506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H 0.026 0.974 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.996 5.996 13 C 0.105 3.895 14 S 2.789 3.211 15 O -1.011 7.011 16 O -1.006 7.006 17 N -0.994 5.994 18 C 0.088 3.912 19 C 0.144 3.856 20 C -0.089 4.089 21 C -0.106 4.106 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.105 4.105 27 C -0.092 4.092 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.039 0.961 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.132 0.868 45 H 0.086 0.914 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.732 -0.704 -21.492 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.170 3.830 3 H 0.043 0.957 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.838 5.838 13 C -0.041 4.041 14 S 2.800 3.200 15 O -0.995 6.995 16 O -0.990 6.990 17 N -0.834 5.834 18 C -0.057 4.057 19 C 0.038 3.962 20 C -0.127 4.127 21 C -0.107 4.107 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.134 4.134 26 C -0.106 4.106 27 C -0.131 4.131 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.151 0.849 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.150 0.850 45 H 0.104 0.896 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.833 -0.528 -21.320 22.110 hybrid contribution 0.089 -0.264 1.283 1.313 sum -5.745 -0.792 -20.037 20.859 Atomic orbital electron populations 1.21894 0.96655 1.00212 1.00540 1.18406 0.92336 0.91252 0.81020 0.95652 1.21688 1.31578 1.12966 0.91607 0.92815 1.25599 0.95232 0.95720 1.01533 1.69967 1.37281 1.23588 1.24278 0.85587 0.78305 0.78603 0.79618 1.19609 1.20997 1.19904 1.57657 1.69959 1.20981 1.35189 1.21318 1.01719 0.80402 1.00643 1.01510 0.73904 0.72381 0.72232 1.93542 1.75284 1.57205 1.73443 1.93497 1.69939 1.60875 1.74687 1.57790 1.66962 1.25194 1.33424 1.21587 1.01165 0.81123 1.01841 1.21608 0.95799 0.95296 0.83504 1.21352 0.97497 1.01446 0.92446 1.20585 0.96243 0.99594 0.94279 1.20880 0.99192 1.00688 0.92644 1.21362 0.93230 0.98676 1.00988 1.21364 0.99761 0.99270 0.93860 1.20887 0.97208 1.00470 0.94882 1.20589 0.95075 0.99437 0.95458 1.21420 0.94825 1.03939 0.92892 0.93935 0.91544 0.94362 0.92626 0.94197 0.90209 0.90477 0.91339 0.88478 0.92321 0.87749 0.88593 0.89864 0.84885 0.83670 0.83739 0.85030 0.89573 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.95 71.98 0.64 -5.17 16 2 C 0.27 13.30 2.62 44.25 0.12 13.41 16 3 H 0.03 1.40 6.91 -2.39 -0.02 1.39 16 4 C -0.54 -29.21 8.37 25.60 0.21 -28.99 16 5 H 0.05 2.93 7.65 -2.91 -0.02 2.91 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -50.76 11.32 21.45 0.24 -50.52 16 8 Si 0.95 43.35 29.54 68.60 2.03 45.37 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -1.00 -40.76 3.12 -520.46 -1.62 -42.38 16 13 C 0.10 3.60 9.53 127.77 1.22 4.81 16 14 S 2.79 109.67 6.02 -56.49 -0.34 109.33 16 15 O -1.01 -48.09 15.78 -128.00 -2.02 -50.10 16 16 O -1.01 -41.12 15.79 -128.00 -2.02 -43.15 16 17 N -0.99 -28.97 3.26 -511.78 -1.67 -30.64 16 18 C 0.09 2.25 8.86 127.77 1.13 3.39 16 19 C 0.14 3.51 3.50 45.90 0.16 3.67 16 20 C -0.09 -1.85 6.38 30.52 0.19 -1.66 16 21 C -0.11 -2.15 6.14 -19.59 -0.12 -2.27 16 22 C -0.12 -1.98 10.04 22.30 0.22 -1.76 16 23 C -0.12 -1.83 10.05 22.24 0.22 -1.60 16 24 C -0.12 -1.86 10.05 22.24 0.22 -1.63 16 25 C -0.12 -2.05 10.04 22.30 0.22 -1.82 16 26 C -0.11 -2.14 6.14 -19.59 -0.12 -2.26 16 27 C -0.09 -1.95 6.33 30.51 0.19 -1.75 16 28 H 0.04 1.73 6.66 -2.39 -0.02 1.72 16 29 H 0.07 3.28 6.07 -2.39 -0.01 3.26 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 2.60 6.43 -2.39 -0.02 2.58 16 34 H 0.08 2.14 7.79 -2.39 -0.02 2.13 16 35 H 0.07 1.57 7.93 -2.39 -0.02 1.55 16 36 H 0.10 1.94 6.48 -2.39 -0.02 1.93 16 37 H 0.06 1.78 7.79 -2.39 -0.02 1.76 16 38 H 0.10 2.70 6.96 -2.39 -0.02 2.69 16 39 H 0.10 1.87 6.77 -2.39 -0.02 1.85 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 44 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 45 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.09 1.94 6.37 -2.39 -0.02 1.92 16 Total: -1.00 -68.26 375.36 0.55 -67.72 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.97 Total: 16.52 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 4.98 Total: -22.15 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -3.05 Total: -123.54 kcal Atomic # 8 Polarization: -89.21 SS G_CDS: -4.04 Total: -93.25 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 109.67 SS G_CDS: -0.34 Total: 109.33 kcal Total: -68.26 0.55 -67.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330423300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.857 kcal (2) G-P(sol) polarization free energy of solvation -68.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds