Wall clock time and date at job start Tue Mar 31 2020 20:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47787 * 2 1 4 4 C 1.50704 * 109.47229 * 239.99748 * 2 1 3 5 5 H 1.07996 * 119.99859 * 267.34006 * 4 2 1 6 6 C 1.37880 * 119.99869 * 87.32889 * 4 2 1 7 7 N 1.31516 * 119.99709 * 353.65069 * 6 4 2 8 8 Si 1.86798 * 120.00005 * 173.64761 * 6 4 2 9 9 H 1.48496 * 109.47131 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46900 * 240.00082 * 8 6 4 11 11 H 1.48495 * 109.47173 * 120.00238 * 8 6 4 12 12 N 1.46502 * 109.47017 * 120.00205 * 2 1 3 13 13 C 1.46500 * 120.00202 * 59.99946 * 12 2 1 14 14 S 1.65598 * 120.00106 * 239.99515 * 12 2 1 15 15 O 1.42095 * 106.40636 * 203.54150 * 14 12 2 16 16 O 1.42105 * 106.40059 * 336.46012 * 14 12 2 17 17 N 1.65602 * 107.21728 * 89.99762 * 14 12 2 18 18 C 1.46497 * 119.99598 * 65.00459 * 17 14 12 19 19 C 1.53006 * 109.47070 * 165.00137 * 18 17 14 20 20 H 1.09009 * 110.26452 * 307.07091 * 19 18 17 21 21 C 1.54343 * 110.30456 * 185.00086 * 19 18 17 22 22 C 1.54341 * 102.39146 * 214.72629 * 21 19 18 23 23 C 1.51374 * 105.17164 * 26.34462 * 22 21 19 24 24 C 1.38495 * 130.39319 * 162.80680 * 23 22 21 25 25 C 1.38106 * 120.21538 * 179.97438 * 24 23 22 26 26 C 1.38254 * 119.93155 * 0.02562 * 25 24 23 27 27 C 1.38104 * 119.93802 * 359.97438 * 26 25 24 28 28 C 1.38217 * 109.75477 * 342.81351 * 23 22 21 29 29 H 1.09002 * 109.47116 * 54.35800 * 1 2 3 30 30 H 1.09000 * 109.47761 * 174.36080 * 1 2 3 31 31 H 1.09002 * 109.47239 * 294.36171 * 1 2 3 32 32 H 0.96994 * 120.00464 * 1.88952 * 7 6 4 33 33 H 1.08992 * 109.47473 * 89.99667 * 13 12 2 34 34 H 1.09002 * 109.46936 * 209.99778 * 13 12 2 35 35 H 1.08997 * 109.46958 * 329.99691 * 13 12 2 36 36 H 0.97004 * 120.00430 * 245.00217 * 17 14 12 37 37 H 1.09003 * 109.47285 * 284.99272 * 18 17 14 38 38 H 1.08996 * 109.47424 * 44.99835 * 18 17 14 39 39 H 1.09002 * 110.82089 * 332.94803 * 21 19 18 40 40 H 1.09000 * 110.82365 * 96.30069 * 21 19 18 41 41 H 1.09007 * 110.30578 * 145.26704 * 22 21 19 42 42 H 1.09002 * 110.30441 * 267.42221 * 22 21 19 43 43 H 1.07997 * 119.89427 * 359.97438 * 24 23 22 44 44 H 1.07995 * 120.03191 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.02794 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.88920 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.2532 -1.7669 -1.1916 6 6 2.2096 -0.0118 -2.4058 7 7 1.8239 1.2428 -2.4896 8 14 2.9978 -0.8470 -3.8791 9 1 3.3392 -2.2492 -3.5291 10 1 4.2334 -0.1164 -4.2599 11 1 2.0469 -0.8396 -5.0196 12 7 2.0182 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1140 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5795 1.1828 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.1510 -0.0353 4.2817 19 6 0.6087 0.8076 5.4378 20 1 1.4228 1.3356 5.9344 21 6 -0.1432 -0.0870 6.4461 22 6 -1.2799 0.8394 6.9274 23 6 -1.5108 1.8083 5.7875 24 6 -2.5855 2.6400 5.5203 25 6 -2.5757 3.4509 4.4024 26 6 -1.4901 3.4326 3.5464 27 6 -0.4175 2.6039 3.8112 28 6 -0.4256 1.7899 4.9316 29 1 -0.3633 0.5989 -0.8352 30 1 -0.3634 -1.0226 -0.1010 31 1 -0.3634 0.4239 0.9362 32 1 1.4398 1.6848 -1.7164 33 1 2.4155 -2.7378 0.9717 34 1 1.6237 -2.2853 2.5002 35 1 0.6903 -2.3002 0.9847 36 1 1.9055 1.7750 3.4681 37 1 0.3187 -0.4566 3.7178 38 1 1.7669 -0.8424 4.6781 39 1 -0.5467 -0.9716 5.9534 40 1 0.5074 -0.3694 7.2738 41 1 -2.1832 0.2608 7.1208 42 1 -0.9750 1.3774 7.8250 43 1 -3.4340 2.6545 6.1882 44 1 -3.4155 4.0980 4.1966 45 1 -1.4806 4.0664 2.6719 46 1 0.4302 2.5905 3.1422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330427119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:50 Heat of formation + Delta-G solvation = -58.068803 kcal Electronic energy + Delta-G solvation = -28495.058928 eV Core-core repulsion = 24703.809872 eV Total energy + Delta-G solvation = -3791.249056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.45141 -36.79343 -36.50977 -36.28593 -35.23687 -34.63027 -32.68651 -31.19904 -29.34936 -29.16457 -28.24807 -25.69361 -24.73175 -24.05163 -22.83021 -21.24434 -20.93335 -20.50827 -18.77179 -17.45426 -16.97491 -16.88186 -16.70632 -15.99427 -15.45031 -15.28216 -15.00916 -14.43242 -14.06791 -13.79311 -13.62719 -13.49407 -13.32255 -13.07408 -12.85994 -12.77558 -12.46978 -12.18629 -11.98747 -11.90428 -11.83417 -11.51823 -11.43847 -11.31773 -11.26613 -11.12706 -11.08284 -11.00663 -10.79138 -10.72288 -10.54918 -10.14811 -10.11951 -9.36152 -8.96588 -8.90055 -8.63790 -8.46071 -7.86901 -6.42909 -4.13889 1.16610 1.25747 1.30132 3.41976 3.45110 3.49503 3.60741 3.65324 4.07377 4.20953 4.30403 4.50240 4.59006 4.79695 4.91605 4.95115 4.98807 5.08239 5.14321 5.26405 5.29909 5.38112 5.41375 5.51311 5.57051 5.60891 5.66478 5.70710 5.88738 5.94709 6.03364 6.05543 6.08489 6.26439 6.36246 6.43808 6.44850 6.46568 6.53279 6.57733 6.70250 6.90572 7.01418 7.15203 7.35202 7.64651 8.07665 8.42120 8.78702 9.56364 10.95575 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.003801 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.366347 B = 7364.806799 C = 8343.594652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.251 3.749 3 H 0.059 0.941 4 C -0.597 4.597 5 H 0.058 0.942 6 C 0.024 3.976 7 N -0.902 5.902 8 Si 1.074 2.926 9 H -0.289 1.289 10 H -0.285 1.285 11 H -0.287 1.287 12 N -0.984 5.984 13 C 0.109 3.891 14 S 2.773 3.227 15 O -0.996 6.996 16 O -0.974 6.974 17 N -1.136 6.136 18 C 0.130 3.870 19 C -0.057 4.057 20 H 0.094 0.906 21 C -0.114 4.114 22 C -0.080 4.080 23 C -0.100 4.100 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.117 4.117 27 C -0.101 4.101 28 C -0.091 4.091 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.021 0.979 32 H 0.271 0.729 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.409 0.591 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 0.161 18.677 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.148 3.852 3 H 0.077 0.923 4 C -0.637 4.637 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.538 5.538 8 Si 0.902 3.098 9 H -0.214 1.214 10 H -0.211 1.211 11 H -0.214 1.214 12 N -0.827 5.827 13 C -0.038 4.038 14 S 2.783 3.217 15 O -0.979 6.979 16 O -0.958 6.958 17 N -0.896 5.896 18 C 0.003 3.997 19 C -0.076 4.076 20 H 0.112 0.888 21 C -0.153 4.153 22 C -0.117 4.117 23 C -0.100 4.100 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.135 4.135 27 C -0.119 4.119 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.244 0.756 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.594 0.236 17.106 18.718 hybrid contribution -1.007 0.241 1.494 1.818 sum -8.601 0.477 18.600 20.498 Atomic orbital electron populations 1.22185 0.98997 1.00514 0.98673 1.18866 0.90437 0.93557 0.82367 0.92296 1.22150 1.48553 0.97390 0.95607 0.92377 1.25850 0.95129 0.95965 1.01290 1.70753 1.38163 1.11840 1.33019 0.83479 0.76607 0.74818 0.74878 1.21442 1.21143 1.21363 1.57840 1.70013 1.19601 1.35227 1.21149 1.01458 0.82398 0.98747 1.02221 0.73776 0.73269 0.72467 1.93527 1.69159 1.60711 1.74552 1.93619 1.74307 1.56025 1.71861 1.56414 1.62518 1.17325 1.53333 1.21247 0.94776 0.92977 0.90651 1.20955 0.96614 0.94690 0.95376 0.88791 1.22336 0.96719 0.97861 0.98348 1.21021 0.99039 0.95508 0.96100 1.20562 0.94588 0.97903 0.96925 1.20579 0.97734 0.96708 0.97856 1.21043 0.98508 0.99353 0.94916 1.21123 0.93715 0.99035 0.99589 1.20813 0.99082 0.95665 0.96358 1.20484 0.95943 0.97432 0.95211 0.92611 0.93648 0.95966 0.91778 0.93145 0.93330 0.91302 0.75577 0.91583 0.90243 0.90328 0.90059 0.90667 0.90278 0.86502 0.86011 0.85663 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.98 37.15 0.33 -2.72 16 2 C 0.25 6.01 2.26 -69.08 -0.16 5.86 16 3 H 0.06 1.57 5.67 -51.93 -0.29 1.27 16 4 C -0.60 -16.15 8.29 -34.44 -0.29 -16.44 16 5 H 0.06 1.57 7.36 -52.49 -0.39 1.18 16 6 C 0.02 0.66 5.45 -17.82 -0.10 0.57 16 7 N -0.90 -26.57 13.62 55.43 0.75 -25.82 16 8 Si 1.07 25.16 29.91 -169.99 -5.08 20.07 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.98 -20.29 3.12 -115.86 -0.36 -20.66 16 13 C 0.11 1.92 9.37 59.85 0.56 2.48 16 14 S 2.77 54.86 6.09 -107.50 -0.66 54.21 16 15 O -1.00 -20.91 16.68 -57.17 -0.95 -21.86 16 16 O -0.97 -23.25 16.70 -57.17 -0.95 -24.21 16 17 N -1.14 -16.75 5.52 -10.61 -0.06 -16.81 16 18 C 0.13 1.58 5.49 -4.04 -0.02 1.56 16 19 C -0.06 -0.58 2.98 -90.74 -0.27 -0.85 16 20 H 0.09 0.92 8.14 -51.92 -0.42 0.49 16 21 C -0.11 -0.91 6.59 -25.33 -0.17 -1.07 16 22 C -0.08 -0.63 6.77 -26.85 -0.18 -0.81 16 23 C -0.10 -1.04 6.14 -104.20 -0.64 -1.68 16 24 C -0.11 -1.11 10.04 -39.53 -0.40 -1.51 16 25 C -0.12 -1.25 10.05 -39.62 -0.40 -1.64 16 26 C -0.12 -1.36 10.05 -39.62 -0.40 -1.76 16 27 C -0.10 -1.27 9.35 -39.54 -0.37 -1.64 16 28 C -0.09 -1.05 5.56 -104.21 -0.58 -1.63 16 29 H 0.05 1.26 7.76 -51.93 -0.40 0.86 16 30 H 0.04 0.92 6.91 -51.93 -0.36 0.56 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.27 7.88 6.35 -40.82 -0.26 7.63 16 33 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 35 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 36 H 0.41 5.54 6.18 -34.48 -0.21 5.33 16 37 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 38 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 39 H 0.08 0.60 7.91 -51.93 -0.41 0.19 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 45 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 46 H 0.12 1.58 5.68 -52.49 -0.30 1.29 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -34.04 377.32 -11.48 -45.53 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.79 Total: 5.14 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -3.07 Total: -21.29 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.33 Total: -63.28 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -1.91 Total: -46.07 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.08 Total: 20.07 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -0.66 Total: 54.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.04 -11.48 -45.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330427119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.540 kcal (2) G-P(sol) polarization free energy of solvation -34.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds