Wall clock time and date at job start Tue Mar 31 2020 20:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47787 * 2 1 4 4 C 1.50704 * 109.47229 * 239.99748 * 2 1 3 5 5 H 1.07996 * 119.99859 * 267.34006 * 4 2 1 6 6 C 1.37880 * 119.99869 * 87.32889 * 4 2 1 7 7 N 1.31516 * 119.99709 * 353.65069 * 6 4 2 8 8 Si 1.86798 * 120.00005 * 173.64761 * 6 4 2 9 9 H 1.48496 * 109.47131 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46900 * 240.00082 * 8 6 4 11 11 H 1.48495 * 109.47173 * 120.00238 * 8 6 4 12 12 N 1.46502 * 109.47017 * 120.00205 * 2 1 3 13 13 C 1.46500 * 120.00202 * 59.99946 * 12 2 1 14 14 S 1.65598 * 120.00106 * 239.99515 * 12 2 1 15 15 O 1.42095 * 106.40636 * 203.54150 * 14 12 2 16 16 O 1.42105 * 106.40059 * 336.46012 * 14 12 2 17 17 N 1.65602 * 107.21728 * 89.99762 * 14 12 2 18 18 C 1.46497 * 119.99598 * 65.00459 * 17 14 12 19 19 C 1.53006 * 109.47070 * 165.00137 * 18 17 14 20 20 H 1.09009 * 110.26452 * 307.07091 * 19 18 17 21 21 C 1.54343 * 110.30456 * 185.00086 * 19 18 17 22 22 C 1.54341 * 102.39146 * 214.72629 * 21 19 18 23 23 C 1.51374 * 105.17164 * 26.34462 * 22 21 19 24 24 C 1.38495 * 130.39319 * 162.80680 * 23 22 21 25 25 C 1.38106 * 120.21538 * 179.97438 * 24 23 22 26 26 C 1.38254 * 119.93155 * 0.02562 * 25 24 23 27 27 C 1.38104 * 119.93802 * 359.97438 * 26 25 24 28 28 C 1.38217 * 109.75477 * 342.81351 * 23 22 21 29 29 H 1.09002 * 109.47116 * 54.35800 * 1 2 3 30 30 H 1.09000 * 109.47761 * 174.36080 * 1 2 3 31 31 H 1.09002 * 109.47239 * 294.36171 * 1 2 3 32 32 H 0.96994 * 120.00464 * 1.88952 * 7 6 4 33 33 H 1.08992 * 109.47473 * 89.99667 * 13 12 2 34 34 H 1.09002 * 109.46936 * 209.99778 * 13 12 2 35 35 H 1.08997 * 109.46958 * 329.99691 * 13 12 2 36 36 H 0.97004 * 120.00430 * 245.00217 * 17 14 12 37 37 H 1.09003 * 109.47285 * 284.99272 * 18 17 14 38 38 H 1.08996 * 109.47424 * 44.99835 * 18 17 14 39 39 H 1.09002 * 110.82089 * 332.94803 * 21 19 18 40 40 H 1.09000 * 110.82365 * 96.30069 * 21 19 18 41 41 H 1.09007 * 110.30578 * 145.26704 * 22 21 19 42 42 H 1.09002 * 110.30441 * 267.42221 * 22 21 19 43 43 H 1.07997 * 119.89427 * 359.97438 * 24 23 22 44 44 H 1.07995 * 120.03191 * 179.97438 * 25 24 23 45 45 H 1.08004 * 120.02794 * 180.02562 * 26 25 24 46 46 H 1.08002 * 119.88920 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.2532 -1.7669 -1.1916 6 6 2.2096 -0.0118 -2.4058 7 7 1.8239 1.2428 -2.4896 8 14 2.9978 -0.8470 -3.8791 9 1 3.3392 -2.2492 -3.5291 10 1 4.2334 -0.1164 -4.2599 11 1 2.0469 -0.8396 -5.0196 12 7 2.0182 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1140 2.2862 15 8 3.7118 -0.8790 2.9814 16 8 3.5795 1.1828 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.1510 -0.0353 4.2817 19 6 0.6087 0.8076 5.4378 20 1 1.4228 1.3356 5.9344 21 6 -0.1432 -0.0870 6.4461 22 6 -1.2799 0.8394 6.9274 23 6 -1.5108 1.8083 5.7875 24 6 -2.5855 2.6400 5.5203 25 6 -2.5757 3.4509 4.4024 26 6 -1.4901 3.4326 3.5464 27 6 -0.4175 2.6039 3.8112 28 6 -0.4256 1.7899 4.9316 29 1 -0.3633 0.5989 -0.8352 30 1 -0.3634 -1.0226 -0.1010 31 1 -0.3634 0.4239 0.9362 32 1 1.4398 1.6848 -1.7164 33 1 2.4155 -2.7378 0.9717 34 1 1.6237 -2.2853 2.5002 35 1 0.6903 -2.3002 0.9847 36 1 1.9055 1.7750 3.4681 37 1 0.3187 -0.4566 3.7178 38 1 1.7669 -0.8424 4.6781 39 1 -0.5467 -0.9716 5.9534 40 1 0.5074 -0.3694 7.2738 41 1 -2.1832 0.2608 7.1208 42 1 -0.9750 1.3774 7.8250 43 1 -3.4340 2.6545 6.1882 44 1 -3.4155 4.0980 4.1966 45 1 -1.4806 4.0664 2.6719 46 1 0.4302 2.5905 3.1422 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330427119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:50 Heat of formation + Delta-G solvation = -80.147859 kcal Electronic energy + Delta-G solvation = -28496.016348 eV Core-core repulsion = 24703.809872 eV Total energy + Delta-G solvation = -3792.206476 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23217 -38.44264 -38.11240 -37.40980 -36.96153 -35.60913 -34.65651 -32.06886 -30.97975 -30.14045 -29.06588 -27.26859 -26.77311 -24.97134 -23.59131 -22.84423 -21.93429 -21.39174 -20.28674 -19.13313 -18.66086 -18.42277 -17.71802 -17.24165 -16.52110 -16.24652 -16.03417 -15.69859 -15.53220 -15.24536 -15.18125 -14.97464 -14.64658 -14.19149 -13.72910 -13.70214 -13.61378 -13.57641 -13.44196 -13.29143 -13.25715 -13.16805 -13.10927 -12.83691 -12.58367 -12.52539 -12.36178 -12.08171 -12.03236 -11.92400 -11.87223 -11.76263 -11.54304 -10.87700 -10.58819 -10.50052 -9.73374 -9.65123 -9.42711 -8.61355 -6.32958 -0.40679 0.43746 0.46573 1.53118 1.61992 1.77373 1.96606 2.53337 2.58401 2.83027 3.21085 3.34480 3.44732 3.57309 3.84479 3.96902 4.08770 4.12996 4.17737 4.26660 4.38812 4.46009 4.50273 4.54035 4.63833 4.67122 4.73746 4.78431 4.80690 4.83370 4.91520 4.92684 5.02332 5.06028 5.12802 5.19932 5.29035 5.31627 5.35793 5.50415 5.56729 5.62306 5.71026 5.78336 6.01188 6.06852 6.11378 6.28612 6.61013 7.45090 8.77201 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015186 B = 0.003801 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.366347 B = 7364.806799 C = 8343.594652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.254 3.746 3 H 0.027 0.973 4 C -0.607 4.607 5 H 0.056 0.944 6 C -0.028 4.028 7 N -0.931 5.931 8 Si 1.114 2.886 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.992 5.992 13 C 0.101 3.899 14 S 2.792 3.208 15 O -1.007 7.007 16 O -1.022 7.022 17 N -1.120 6.120 18 C 0.122 3.878 19 C -0.054 4.054 20 H 0.098 0.902 21 C -0.110 4.110 22 C -0.076 4.076 23 C -0.104 4.104 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.137 4.137 27 C -0.125 4.125 28 C -0.106 4.106 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.260 0.740 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.416 0.584 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.125 0.875 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 -1.379 21.031 23.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.149 3.851 3 H 0.045 0.955 4 C -0.646 4.646 5 H 0.074 0.926 6 C -0.228 4.228 7 N -0.569 5.569 8 Si 0.936 3.064 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.834 5.834 13 C -0.044 4.044 14 S 2.801 3.199 15 O -0.990 6.990 16 O -1.006 7.006 17 N -0.885 5.885 18 C -0.003 4.003 19 C -0.073 4.073 20 H 0.116 0.884 21 C -0.148 4.148 22 C -0.113 4.113 23 C -0.105 4.105 24 C -0.133 4.133 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.143 4.143 28 C -0.106 4.106 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.253 0.747 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.143 0.857 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.006 -1.330 19.469 21.493 hybrid contribution -0.608 0.727 0.920 1.320 sum -9.615 -0.603 20.389 22.550 Atomic orbital electron populations 1.21955 0.96807 1.00959 0.99099 1.18599 0.91926 0.91854 0.82698 0.95511 1.22502 1.47859 0.97443 0.96837 0.92584 1.27139 0.95320 0.95998 1.04338 1.70857 1.40333 1.12915 1.32766 0.82979 0.75943 0.74795 0.72659 1.19574 1.21311 1.20107 1.57616 1.69965 1.20988 1.34782 1.21381 1.01586 0.80363 1.01078 1.01376 0.73719 0.72380 0.72400 1.93506 1.69816 1.61134 1.74549 1.93554 1.76005 1.57600 1.73446 1.55979 1.62182 1.17916 1.52374 1.21554 0.94611 0.93229 0.90926 1.21004 0.96667 0.94650 0.95013 0.88395 1.22393 0.96737 0.97464 0.98183 1.21087 0.99701 0.95061 0.95433 1.20966 0.94020 0.98070 0.97395 1.20932 0.98436 0.96043 0.97876 1.21325 0.98522 0.99597 0.94736 1.21284 0.94370 0.99471 1.00346 1.20862 0.99163 0.97094 0.97201 1.20682 0.97032 0.97726 0.95208 0.94674 0.92526 0.93508 0.92971 0.94148 0.89913 0.90271 0.74711 0.91235 0.89219 0.89798 0.87996 0.89085 0.88909 0.84031 0.84036 0.85673 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.44 8.98 71.98 0.65 -4.80 16 2 C 0.25 12.38 2.26 44.24 0.10 12.48 16 3 H 0.03 1.50 5.67 -2.39 -0.01 1.48 16 4 C -0.61 -33.25 8.29 25.60 0.21 -33.04 16 5 H 0.06 3.02 7.36 -2.91 -0.02 3.00 16 6 C -0.03 -1.61 5.45 84.66 0.46 -1.15 16 7 N -0.93 -56.58 13.62 21.45 0.29 -56.28 16 8 Si 1.11 50.91 29.91 68.60 2.05 52.96 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 12 N -0.99 -40.63 3.12 -520.46 -1.62 -42.26 16 13 C 0.10 3.41 9.37 127.77 1.20 4.61 16 14 S 2.79 110.67 6.09 -56.49 -0.34 110.33 16 15 O -1.01 -41.36 16.68 -128.00 -2.14 -43.49 16 16 O -1.02 -50.51 16.70 -128.00 -2.14 -52.65 16 17 N -1.12 -32.47 5.52 -187.49 -1.04 -33.51 16 18 C 0.12 2.73 5.49 86.38 0.47 3.20 16 19 C -0.05 -0.98 2.98 -10.87 -0.03 -1.01 16 20 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 21 C -0.11 -1.33 6.59 31.51 0.21 -1.13 16 22 C -0.08 -0.91 6.77 30.52 0.21 -0.71 16 23 C -0.10 -1.92 6.14 -19.59 -0.12 -2.04 16 24 C -0.12 -2.03 10.04 22.30 0.22 -1.81 16 25 C -0.12 -2.41 10.05 22.24 0.22 -2.18 16 26 C -0.14 -3.21 10.05 22.24 0.22 -2.99 16 27 C -0.12 -3.16 9.35 22.30 0.21 -2.95 16 28 C -0.11 -2.32 5.56 -19.60 -0.11 -2.43 16 29 H 0.03 1.61 7.76 -2.39 -0.02 1.59 16 30 H 0.06 2.23 6.91 -2.39 -0.02 2.22 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.26 15.85 6.35 -92.71 -0.59 15.27 16 33 H 0.04 1.43 8.10 -2.39 -0.02 1.41 16 34 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 35 H 0.08 2.49 6.54 -2.39 -0.02 2.47 16 36 H 0.42 11.41 6.18 -96.74 -0.60 10.82 16 37 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 38 H 0.09 1.85 7.75 -2.39 -0.02 1.83 16 39 H 0.08 0.95 7.91 -2.39 -0.02 0.93 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 44 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 45 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 46 H 0.11 2.92 5.68 -2.91 -0.02 2.90 16 Total: -1.00 -75.00 377.32 -0.24 -75.24 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.57 Total: 25.59 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 4.12 Total: -35.93 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -2.37 Total: -132.05 kcal Atomic # 8 Polarization: -91.87 SS G_CDS: -4.27 Total: -96.14 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Atomic # 16 Polarization: 110.67 SS G_CDS: -0.34 Total: 110.33 kcal Total: -75.00 -0.24 -75.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330427119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.912 kcal (2) G-P(sol) polarization free energy of solvation -74.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds