Wall clock time and date at job start Tue Mar 31 2020 20:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47166 * 2 1 4 4 C 1.50697 * 109.47043 * 240.00162 * 2 1 3 5 5 H 1.08001 * 119.99538 * 239.99953 * 4 2 1 6 6 C 1.37873 * 120.00332 * 59.99775 * 4 2 1 7 7 N 1.31516 * 119.99762 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00279 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.47008 * 60.00397 * 8 6 4 10 10 H 1.48503 * 109.47398 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47535 * 300.00426 * 8 6 4 12 12 N 1.46495 * 109.47077 * 120.00158 * 2 1 3 13 13 C 1.46503 * 120.00390 * 59.99894 * 12 2 1 14 14 S 1.65606 * 119.99920 * 240.00170 * 12 2 1 15 15 O 1.42093 * 106.40081 * 320.82810 * 14 12 2 16 16 O 1.42104 * 106.40056 * 187.90955 * 14 12 2 17 17 N 1.65598 * 107.21648 * 74.37026 * 14 12 2 18 18 C 1.46492 * 120.00387 * 66.56993 * 17 14 12 19 19 C 1.53001 * 115.55428 * 158.55663 * 18 17 14 20 20 C 1.50702 * 109.47146 * 304.89147 * 19 18 17 21 21 C 1.38232 * 119.99326 * 275.08520 * 20 19 18 22 22 C 1.38238 * 119.99590 * 179.78652 * 21 20 19 23 23 C 1.38235 * 119.99933 * 0.44323 * 22 21 20 24 24 C 1.38235 * 120.00150 * 359.81039 * 23 22 21 25 25 C 1.38232 * 120.00280 * 95.35469 * 20 19 18 26 26 C 1.52998 * 117.50025 * 12.88399 * 18 17 14 27 27 C 1.53003 * 117.49774 * 304.22456 * 18 17 14 28 28 H 1.08998 * 109.47246 * 300.00177 * 1 2 3 29 29 H 1.09003 * 109.46797 * 60.00228 * 1 2 3 30 30 H 1.08998 * 109.47166 * 179.97438 * 1 2 3 31 31 H 0.97002 * 119.99625 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46965 * 267.57342 * 13 12 2 33 33 H 1.09001 * 109.46542 * 27.56318 * 13 12 2 34 34 H 1.08997 * 109.47268 * 147.56486 * 13 12 2 35 35 H 0.97006 * 119.99342 * 246.28798 * 17 14 12 36 36 H 1.09003 * 109.46654 * 64.88637 * 19 18 17 37 37 H 1.08998 * 109.47399 * 184.88766 * 19 18 17 38 38 H 1.07995 * 120.00897 * 359.97438 * 21 20 19 39 39 H 1.07999 * 120.00597 * 180.27230 * 22 21 20 40 40 H 1.07996 * 120.00113 * 179.83482 * 23 22 21 41 41 H 1.07999 * 120.00508 * 180.02562 * 24 23 22 42 42 H 1.08003 * 119.99840 * 359.97438 * 25 20 19 43 43 H 1.09008 * 117.49719 * 0.02562 * 26 18 17 44 44 H 1.09003 * 117.50241 * 145.01824 * 26 18 17 45 45 H 1.08993 * 117.50347 * 214.97717 * 27 18 17 46 46 H 1.08998 * 117.49869 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2205 11 1 3.8075 -1.1190 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.8481 0.9324 1.5252 16 8 3.4258 -0.8588 3.2164 17 7 1.9858 1.1436 3.1307 18 6 0.9571 0.6054 4.0240 19 6 0.4626 1.5603 5.1123 20 6 1.6365 2.0567 5.9163 21 6 2.1156 1.3075 6.9746 22 6 3.1952 1.7607 7.7094 23 6 3.7899 2.9675 7.3917 24 6 3.3075 3.7192 6.3367 25 6 2.2307 3.2639 5.5991 26 6 1.0307 -0.8831 4.3704 27 6 -0.0585 -0.3699 3.4252 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.7095 1.1618 -3.4844 32 1 0.7612 -2.1443 2.0359 33 1 1.4872 -2.5860 0.4720 34 1 2.4815 -2.5929 1.9484 35 1 2.0930 2.1032 3.0370 36 1 -0.0449 2.4068 4.6496 37 1 -0.2314 1.0352 5.7686 38 1 1.6484 0.3667 7.2255 39 1 3.5724 1.1734 8.5335 40 1 4.6317 3.3228 7.9674 41 1 3.7723 4.6618 6.0881 42 1 1.8538 3.8511 4.7747 43 1 1.8449 -1.4617 3.9340 44 1 0.7266 -1.1820 5.3736 45 1 -1.0787 -0.3315 3.8068 46 1 0.0386 -0.6106 2.3666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331420801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:27 Heat of formation + Delta-G solvation = -12.773231 kcal Electronic energy + Delta-G solvation = -28899.589572 eV Core-core repulsion = 25110.304680 eV Total energy + Delta-G solvation = -3789.284892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.67521 -38.19625 -36.57551 -36.14366 -35.25432 -32.68366 -32.33019 -31.75676 -30.88590 -29.11099 -27.21771 -25.56838 -25.19834 -22.70329 -22.21597 -21.80601 -20.78305 -20.36572 -18.52966 -17.46584 -17.14755 -16.82714 -16.36864 -15.77871 -15.22983 -15.21023 -14.90888 -14.41416 -14.28024 -13.93635 -13.46845 -13.44344 -13.29526 -13.01770 -12.72815 -12.51071 -12.45106 -12.10465 -11.81191 -11.70791 -11.65510 -11.40796 -11.26489 -11.11367 -11.04921 -10.98136 -10.90237 -10.77735 -10.50592 -10.40111 -10.29647 -10.16217 -10.04462 -9.30614 -8.95794 -8.82784 -8.65135 -8.46736 -7.99334 -6.08697 -4.15013 1.19392 1.32102 1.37201 3.29753 3.34174 3.36819 3.42703 3.70137 3.86542 4.14702 4.39402 4.59631 4.78140 4.82315 4.87582 4.95919 5.01515 5.05473 5.16014 5.23056 5.29931 5.46281 5.55300 5.68264 5.69049 5.74505 5.89557 5.98515 5.99821 6.08230 6.17230 6.27334 6.40115 6.41871 6.43899 6.46800 6.59329 6.65887 6.77365 6.82035 6.96648 6.99625 7.22042 7.48122 7.59445 7.76141 8.03840 8.25758 8.86397 9.50731 10.96827 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020747 B = 0.003567 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.244868 B = 7847.066371 C = 8047.536401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.275 3.725 3 H 0.048 0.952 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.990 5.990 13 C 0.088 3.912 14 S 2.781 3.219 15 O -0.975 6.975 16 O -0.991 6.991 17 N -1.093 6.093 18 C 0.128 3.872 19 C -0.043 4.043 20 C -0.072 4.072 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.213 4.213 27 C -0.217 4.217 28 H 0.017 0.983 29 H 0.092 0.908 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.413 0.587 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.137 0.863 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.862 1.910 18.099 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.172 3.828 3 H 0.066 0.934 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.058 4.058 14 S 2.790 3.210 15 O -0.959 6.959 16 O -0.975 6.975 17 N -0.847 5.847 18 C 0.037 3.963 19 C -0.082 4.082 20 C -0.072 4.072 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.251 4.251 27 C -0.255 4.255 28 H 0.036 0.964 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.246 0.754 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.155 0.845 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.988 1.751 18.088 18.281 hybrid contribution -0.052 0.066 -1.024 1.027 sum -2.040 1.817 17.065 17.282 Atomic orbital electron populations 1.22200 0.98132 0.99861 1.00853 1.18613 0.91293 0.92265 0.80644 0.93427 1.21295 1.31499 1.13072 0.90051 0.91942 1.24895 0.94925 0.95018 0.98991 1.69846 1.36544 1.22675 1.23879 0.86558 0.79380 0.79569 0.81899 1.20235 1.21246 1.20165 1.57709 1.69985 1.19798 1.35826 1.21509 0.99444 0.82134 1.02704 1.01899 0.73423 0.72966 0.72663 1.93618 1.62229 1.69545 1.70514 1.93442 1.79992 1.60818 1.63228 1.55504 1.50497 1.20477 1.58267 1.19983 0.92954 0.90078 0.93247 1.20237 0.94824 0.98711 0.94410 1.19759 0.97340 0.94521 0.95558 1.21025 0.96998 0.99300 0.95515 1.21127 0.96329 0.96359 0.99931 1.21124 1.00066 0.95369 0.98027 1.21143 0.96765 0.99972 0.95870 1.21094 0.96635 0.96178 0.99701 1.24407 1.03215 0.95691 1.01821 1.24306 0.95744 1.03307 1.02189 0.96378 0.88950 0.94727 0.92667 0.93436 0.89714 0.92153 0.75351 0.89931 0.89474 0.86131 0.86255 0.86369 0.86144 0.86036 0.84507 0.88206 0.88342 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 7.96 37.16 0.30 -2.98 16 2 C 0.27 6.51 2.58 -69.08 -0.18 6.33 16 3 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 4 C -0.52 -13.75 7.97 -34.44 -0.27 -14.02 16 5 H 0.06 1.65 7.37 -52.49 -0.39 1.26 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.37 11.32 55.43 0.63 -23.74 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.99 -20.01 1.99 -115.85 -0.23 -20.24 16 13 C 0.09 1.54 7.77 59.85 0.47 2.01 16 14 S 2.78 55.10 5.50 -107.50 -0.59 54.51 16 15 O -0.98 -23.32 17.29 -57.17 -0.99 -24.31 16 16 O -0.99 -19.98 13.39 -57.17 -0.77 -20.75 16 17 N -1.09 -17.21 5.77 0.53 0.00 -17.21 16 18 C 0.13 1.71 2.76 -131.82 -0.36 1.34 16 19 C -0.04 -0.45 5.41 -27.88 -0.15 -0.60 16 20 C -0.07 -0.83 4.86 -104.63 -0.51 -1.33 16 21 C -0.11 -1.24 9.72 -39.58 -0.38 -1.63 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.13 -1.35 10.05 -39.58 -0.40 -1.74 16 24 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 25 C -0.12 -1.34 9.31 -39.59 -0.37 -1.71 16 26 C -0.21 -2.85 8.69 -26.69 -0.23 -3.08 16 27 C -0.22 -2.83 8.78 -26.69 -0.23 -3.07 16 28 H 0.02 0.33 6.78 -51.93 -0.35 -0.02 16 29 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 30 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 32 H 0.05 0.71 5.29 -51.93 -0.27 0.44 16 33 H 0.08 1.54 7.05 -51.93 -0.37 1.17 16 34 H 0.06 1.00 7.15 -51.93 -0.37 0.63 16 35 H 0.41 5.94 8.53 -34.46 -0.29 5.64 16 36 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 43 H 0.14 2.16 3.74 -51.92 -0.19 1.97 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.13 1.96 2.29 -51.93 -0.12 1.85 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -31.75 367.71 -11.03 -42.79 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.39 Total: 9.71 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -3.22 Total: -22.25 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.40 Total: -61.20 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.75 Total: -45.06 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 55.10 SS G_CDS: -0.59 Total: 54.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.75 -11.03 -42.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331420801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.013 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds