Wall clock time and date at job start Tue Mar 31 2020 20:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47073 * 2 1 4 4 C 1.50705 * 109.47196 * 119.99970 * 2 1 3 5 5 H 1.08004 * 119.99543 * 120.00190 * 4 2 1 6 6 C 1.37870 * 120.00156 * 299.99831 * 4 2 1 7 7 N 1.31510 * 120.00121 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99986 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47147 * 89.99663 * 8 6 4 10 10 H 1.48499 * 109.46919 * 329.99587 * 8 6 4 11 11 H 1.48498 * 109.47105 * 209.99903 * 8 6 4 12 12 N 1.46499 * 109.47233 * 240.00174 * 2 1 3 13 13 C 1.46497 * 119.99939 * 299.99788 * 12 2 1 14 14 S 1.65600 * 120.00047 * 119.99650 * 12 2 1 15 15 O 1.42105 * 106.40178 * 203.54161 * 14 12 2 16 16 O 1.42095 * 106.40324 * 336.46056 * 14 12 2 17 17 N 1.65601 * 107.21768 * 90.00168 * 14 12 2 18 18 C 1.46506 * 119.99945 * 65.81956 * 17 14 12 19 19 H 1.09003 * 109.25322 * 4.65015 * 18 17 14 20 20 C 1.52740 * 109.25361 * 245.18334 * 18 17 14 21 21 C 1.53329 * 108.36994 * 188.61307 * 20 18 17 22 22 C 1.52735 * 108.38021 * 69.91732 * 21 20 18 23 23 C 1.50637 * 110.59353 * 308.96804 * 22 21 20 24 24 C 1.38916 * 117.74489 * 197.45752 * 23 22 21 25 25 C 1.37936 * 120.54213 * 180.24798 * 24 23 22 26 26 C 1.38264 * 119.77237 * 0.02562 * 25 24 23 27 27 C 1.37930 * 119.77028 * 359.88056 * 26 25 24 28 28 C 1.37657 * 122.57001 * 17.52187 * 23 22 21 29 29 H 1.09006 * 109.46620 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46978 * 299.99379 * 1 2 3 31 31 H 1.08999 * 109.47087 * 59.99762 * 1 2 3 32 32 H 0.97000 * 120.00525 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.46921 * 90.00194 * 13 12 2 34 34 H 1.08997 * 109.47261 * 209.99455 * 13 12 2 35 35 H 1.08994 * 109.47460 * 329.99887 * 13 12 2 36 36 H 0.96998 * 119.99763 * 245.81795 * 17 14 12 37 37 H 1.09003 * 109.68482 * 308.33254 * 20 18 17 38 38 H 1.09005 * 109.68514 * 68.89056 * 20 18 17 39 39 H 1.09000 * 109.68422 * 189.63868 * 21 20 18 40 40 H 1.08999 * 109.67767 * 310.19632 * 21 20 18 41 41 H 1.09000 * 109.25477 * 69.25919 * 22 21 20 42 42 H 1.09001 * 109.25010 * 188.71901 * 22 21 20 43 43 H 1.07996 * 119.72856 * 0.25167 * 24 23 22 44 44 H 1.08000 * 120.11237 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.11437 * 179.89965 * 26 25 24 46 46 H 1.08002 * 119.73030 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8590 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.8472 2.1764 1.4921 11 1 0.9760 1.9950 3.9068 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 16 2.9704 0.1143 -2.2862 15 8 2.8227 -0.5645 -3.5259 16 8 2.6903 1.4973 -2.1193 17 7 4.5437 -0.1041 -1.8181 18 6 5.1413 -1.4411 -1.8587 19 1 4.4293 -2.1398 -2.2982 20 6 5.4727 -1.8881 -0.4362 21 6 6.2881 -3.1842 -0.5146 22 6 7.6690 -2.8512 -1.0760 23 6 7.5457 -2.0540 -2.3481 24 6 8.6575 -1.9845 -3.1781 25 6 8.6100 -1.2660 -4.3546 26 6 7.4470 -0.6088 -4.7113 27 6 6.3415 -0.6783 -3.8895 28 6 6.3864 -1.4033 -2.7054 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.9036 -0.5279 4.4375 33 1 0.7376 -2.1443 -1.9994 34 1 2.4629 -2.5818 -1.9864 35 1 1.5296 -2.5968 -0.4709 36 1 5.0697 0.6533 -1.5170 37 1 6.0573 -1.1163 0.0644 38 1 4.5505 -2.0673 0.1166 39 1 6.3907 -3.6142 0.4817 40 1 5.7862 -3.8944 -1.1717 41 1 8.2256 -2.2706 -0.3403 42 1 8.2055 -3.7772 -1.2833 43 1 9.5663 -2.4972 -2.8999 44 1 9.4786 -1.2163 -4.9945 45 1 7.4043 -0.0433 -5.6305 46 1 5.4333 -0.1650 -4.1690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332673732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:26 Heat of formation + Delta-G solvation = -53.469101 kcal Electronic energy + Delta-G solvation = -28987.617924 eV Core-core repulsion = 25196.568326 eV Total energy + Delta-G solvation = -3791.049598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.14215 -36.88661 -36.58315 -36.26493 -35.40320 -34.35274 -32.55544 -30.77970 -30.19154 -30.04073 -27.92993 -25.76764 -25.07737 -23.45412 -22.61594 -21.93931 -20.98568 -19.57019 -18.86187 -17.47567 -17.26850 -16.74423 -16.33527 -15.82491 -15.39163 -15.26851 -15.12079 -14.50526 -14.15623 -13.67884 -13.62541 -13.39311 -13.25761 -13.05547 -12.88936 -12.56482 -12.37305 -12.27198 -12.15955 -12.01223 -11.71640 -11.62661 -11.54285 -11.50634 -11.43441 -11.23333 -10.98745 -10.89669 -10.71627 -10.54111 -10.28369 -10.15648 -9.63672 -9.44530 -9.33042 -8.74416 -8.68635 -8.57173 -8.14703 -6.20075 -4.20993 1.05752 1.38375 1.39073 3.21130 3.32647 3.34402 3.37292 3.76389 4.01110 4.30766 4.63346 4.65749 4.80215 4.96166 4.96908 5.08198 5.12385 5.13559 5.18772 5.29047 5.40386 5.51525 5.57489 5.62739 5.79455 5.92473 5.97739 6.00494 6.04864 6.07726 6.13952 6.17000 6.24105 6.36669 6.40671 6.50109 6.50606 6.55505 6.60918 6.62765 6.67613 6.83461 7.01562 7.16225 7.27775 7.39513 7.60553 8.38814 8.82064 9.41349 10.91838 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.004368 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.418203 B = 6408.690886 C = 7397.511721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.239 3.761 3 H 0.056 0.944 4 C -0.526 4.526 5 H 0.085 0.915 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.875 3.125 9 H -0.277 1.277 10 H -0.262 1.262 11 H -0.295 1.295 12 N -0.983 5.983 13 C 0.102 3.898 14 S 2.781 3.219 15 O -0.992 6.992 16 O -0.984 6.984 17 N -1.119 6.119 18 C 0.202 3.798 19 H 0.095 0.905 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.082 4.082 23 C -0.064 4.064 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.130 4.130 27 C -0.100 4.100 28 C -0.086 4.086 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.415 0.585 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.368 -4.009 -11.105 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.565 4.565 5 H 0.103 0.897 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.705 3.295 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.222 1.222 12 N -0.825 5.825 13 C -0.044 4.044 14 S 2.790 3.210 15 O -0.976 6.976 16 O -0.968 6.968 17 N -0.876 5.876 18 C 0.094 3.906 19 H 0.113 0.887 20 C -0.172 4.172 21 C -0.156 4.156 22 C -0.119 4.119 23 C -0.064 4.064 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.148 4.148 27 C -0.118 4.118 28 C -0.087 4.087 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.248 0.752 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.936 -3.663 -11.745 15.814 hybrid contribution -0.230 0.957 0.704 1.210 sum 9.706 -2.707 -11.040 14.947 Atomic orbital electron populations 1.22419 0.98853 1.01357 0.99146 1.19086 0.90948 0.93403 0.83131 0.92611 1.21194 1.32723 1.14380 0.88183 0.89691 1.24861 0.95505 0.96450 0.95780 1.69859 1.45082 1.40068 0.97965 0.87043 0.80848 0.84054 0.77520 1.20345 1.18677 1.22233 1.57449 1.64672 1.21533 1.38846 1.21303 0.99136 0.81633 1.02351 1.01845 0.72673 0.73057 0.73451 1.93569 1.86001 1.76282 1.41698 1.93588 1.83745 1.32521 1.86912 1.56119 1.31894 1.15119 1.84433 1.19457 0.92481 0.83345 0.95274 0.88733 1.22042 1.02365 0.97347 0.95453 1.21542 0.94781 0.97748 1.01535 1.20536 0.98470 0.98871 0.94059 1.19662 0.92657 0.97797 0.96332 1.21113 0.97993 1.00491 0.95010 1.21047 0.97915 0.97830 0.96926 1.21070 0.93438 1.00424 0.99839 1.21220 0.98597 0.98269 0.93735 1.19880 0.94925 0.98278 0.95661 0.92251 0.93325 0.94762 0.92472 0.93649 0.93016 0.89541 0.75219 0.90838 0.88820 0.90743 0.91594 0.90471 0.90917 0.86311 0.86351 0.86223 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.67 37.16 0.32 -3.02 16 2 C 0.24 5.33 2.21 -69.08 -0.15 5.18 16 3 H 0.06 1.34 5.97 -51.93 -0.31 1.03 16 4 C -0.53 -13.09 8.57 -34.44 -0.30 -13.38 16 5 H 0.09 2.20 6.84 -52.48 -0.36 1.84 16 6 C 0.08 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -25.13 13.96 55.43 0.77 -24.36 16 8 Si 0.88 20.82 24.37 -169.99 -4.14 16.68 16 9 H -0.28 -6.40 6.87 56.52 0.39 -6.01 16 10 H -0.26 -6.14 6.53 56.52 0.37 -5.78 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 N -0.98 -18.80 3.12 -115.85 -0.36 -19.16 16 13 C 0.10 1.68 9.28 59.85 0.56 2.23 16 14 S 2.78 51.18 5.99 -107.50 -0.64 50.53 16 15 O -0.99 -18.98 16.67 -57.17 -0.95 -19.93 16 16 O -0.98 -21.05 16.70 -57.17 -0.95 -22.00 16 17 N -1.12 -17.25 4.53 -6.02 -0.03 -17.28 16 18 C 0.20 2.86 2.81 -69.25 -0.19 2.66 16 19 H 0.09 1.34 6.19 -51.93 -0.32 1.02 16 20 C -0.13 -1.85 5.57 -26.69 -0.15 -2.00 16 21 C -0.12 -1.34 5.98 -26.70 -0.16 -1.50 16 22 C -0.08 -0.85 5.67 -28.05 -0.16 -1.01 16 23 C -0.06 -0.76 5.74 -104.61 -0.60 -1.36 16 24 C -0.13 -1.37 9.61 -39.44 -0.38 -1.75 16 25 C -0.12 -1.25 10.05 -39.68 -0.40 -1.65 16 26 C -0.13 -1.51 10.05 -39.68 -0.40 -1.91 16 27 C -0.10 -1.36 9.21 -39.44 -0.36 -1.72 16 28 C -0.09 -1.15 5.55 -104.62 -0.58 -1.73 16 29 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 30 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.74 6.43 -51.93 -0.33 0.40 16 35 H 0.09 1.48 7.02 -51.93 -0.36 1.11 16 36 H 0.41 5.88 8.96 -34.47 -0.31 5.57 16 37 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.09 1.51 7.40 -51.93 -0.38 1.13 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.12 1.01 8.05 -52.49 -0.42 0.58 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.12 1.73 7.61 -52.49 -0.40 1.33 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -30.80 367.00 -10.58 -41.38 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.75 Total: 7.63 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -3.05 Total: -19.01 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: 0.38 Total: -60.80 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -1.91 Total: -41.93 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.14 Total: 16.68 kcal Atomic # 16 Polarization: 51.18 SS G_CDS: -0.64 Total: 50.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.80 -10.58 -41.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332673732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.091 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds