Wall clock time and date at job start Tue Mar 31 2020 20:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47073 * 2 1 4 4 C 1.50705 * 109.47196 * 119.99970 * 2 1 3 5 5 H 1.08004 * 119.99543 * 120.00190 * 4 2 1 6 6 C 1.37870 * 120.00156 * 299.99831 * 4 2 1 7 7 N 1.31510 * 120.00121 * 180.02562 * 6 4 2 8 8 Si 1.86800 * 119.99986 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47147 * 89.99663 * 8 6 4 10 10 H 1.48499 * 109.46919 * 329.99587 * 8 6 4 11 11 H 1.48498 * 109.47105 * 209.99903 * 8 6 4 12 12 N 1.46499 * 109.47233 * 240.00174 * 2 1 3 13 13 C 1.46497 * 119.99939 * 299.99788 * 12 2 1 14 14 S 1.65600 * 120.00047 * 119.99650 * 12 2 1 15 15 O 1.42105 * 106.40178 * 203.54161 * 14 12 2 16 16 O 1.42095 * 106.40324 * 336.46056 * 14 12 2 17 17 N 1.65601 * 107.21768 * 90.00168 * 14 12 2 18 18 C 1.46506 * 119.99945 * 65.81956 * 17 14 12 19 19 H 1.09003 * 109.25322 * 4.65015 * 18 17 14 20 20 C 1.52740 * 109.25361 * 245.18334 * 18 17 14 21 21 C 1.53329 * 108.36994 * 188.61307 * 20 18 17 22 22 C 1.52735 * 108.38021 * 69.91732 * 21 20 18 23 23 C 1.50637 * 110.59353 * 308.96804 * 22 21 20 24 24 C 1.38916 * 117.74489 * 197.45752 * 23 22 21 25 25 C 1.37936 * 120.54213 * 180.24798 * 24 23 22 26 26 C 1.38264 * 119.77237 * 0.02562 * 25 24 23 27 27 C 1.37930 * 119.77028 * 359.88056 * 26 25 24 28 28 C 1.37657 * 122.57001 * 17.52187 * 23 22 21 29 29 H 1.09006 * 109.46620 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46978 * 299.99379 * 1 2 3 31 31 H 1.08999 * 109.47087 * 59.99762 * 1 2 3 32 32 H 0.97000 * 120.00525 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.46921 * 90.00194 * 13 12 2 34 34 H 1.08997 * 109.47261 * 209.99455 * 13 12 2 35 35 H 1.08994 * 109.47460 * 329.99887 * 13 12 2 36 36 H 0.96998 * 119.99763 * 245.81795 * 17 14 12 37 37 H 1.09003 * 109.68482 * 308.33254 * 20 18 17 38 38 H 1.09005 * 109.68514 * 68.89056 * 20 18 17 39 39 H 1.09000 * 109.68422 * 189.63868 * 21 20 18 40 40 H 1.08999 * 109.67767 * 310.19632 * 21 20 18 41 41 H 1.09000 * 109.25477 * 69.25919 * 22 21 20 42 42 H 1.09001 * 109.25010 * 188.71901 * 22 21 20 43 43 H 1.07996 * 119.72856 * 0.25167 * 24 23 22 44 44 H 1.08000 * 120.11237 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.11437 * 179.89965 * 26 25 24 46 46 H 1.08002 * 119.73030 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8590 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.8472 2.1764 1.4921 11 1 0.9760 1.9950 3.9068 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 16 2.9704 0.1143 -2.2862 15 8 2.8227 -0.5645 -3.5259 16 8 2.6903 1.4973 -2.1193 17 7 4.5437 -0.1041 -1.8181 18 6 5.1413 -1.4411 -1.8587 19 1 4.4293 -2.1398 -2.2982 20 6 5.4727 -1.8881 -0.4362 21 6 6.2881 -3.1842 -0.5146 22 6 7.6690 -2.8512 -1.0760 23 6 7.5457 -2.0540 -2.3481 24 6 8.6575 -1.9845 -3.1781 25 6 8.6100 -1.2660 -4.3546 26 6 7.4470 -0.6088 -4.7113 27 6 6.3415 -0.6783 -3.8895 28 6 6.3864 -1.4033 -2.7054 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 1.9036 -0.5279 4.4375 33 1 0.7376 -2.1443 -1.9994 34 1 2.4629 -2.5818 -1.9864 35 1 1.5296 -2.5968 -0.4709 36 1 5.0697 0.6533 -1.5170 37 1 6.0573 -1.1163 0.0644 38 1 4.5505 -2.0673 0.1166 39 1 6.3907 -3.6142 0.4817 40 1 5.7862 -3.8944 -1.1717 41 1 8.2256 -2.2706 -0.3403 42 1 8.2055 -3.7772 -1.2833 43 1 9.5663 -2.4972 -2.8999 44 1 9.4786 -1.2163 -4.9945 45 1 7.4043 -0.0433 -5.6305 46 1 5.4333 -0.1650 -4.1690 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332673732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:25 Heat of formation + Delta-G solvation = -73.729624 kcal Electronic energy + Delta-G solvation = -28988.496486 eV Core-core repulsion = 25196.568326 eV Total energy + Delta-G solvation = -3791.928160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.09289 -38.43528 -38.12244 -37.43141 -36.98334 -35.39605 -34.48970 -31.81842 -31.77725 -31.09152 -28.94150 -27.29357 -26.94850 -24.43526 -23.56970 -22.88869 -22.72271 -20.73280 -20.16907 -19.08708 -18.65799 -18.37762 -17.73318 -17.25547 -16.71104 -16.31151 -16.21792 -15.95419 -15.33988 -15.05780 -14.92123 -14.65214 -14.58715 -14.27815 -14.13555 -14.11156 -13.86241 -13.60424 -13.53925 -13.31760 -13.26358 -13.15138 -12.97369 -12.77605 -12.72001 -12.59910 -12.38664 -12.20359 -11.98900 -11.88609 -11.64373 -11.47222 -11.34742 -11.23993 -10.72187 -10.53266 -9.77298 -9.65147 -9.47221 -8.25690 -6.27701 -0.39799 0.44648 0.49288 1.31247 1.40721 1.47000 1.90297 2.33624 2.53042 2.86679 3.09324 3.33572 3.59082 3.76862 3.89207 3.96949 4.08094 4.13941 4.19764 4.27189 4.35974 4.46180 4.54791 4.59066 4.65633 4.66326 4.70778 4.76695 4.82840 4.88873 5.00618 5.06198 5.09681 5.13073 5.15102 5.22481 5.24101 5.38742 5.47559 5.50035 5.54332 5.63105 5.64885 5.71781 5.82044 6.08602 6.14899 6.38196 6.78214 7.36898 8.88805 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.004368 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.418203 B = 6408.690886 C = 7397.511721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.241 3.759 3 H 0.041 0.959 4 C -0.510 4.510 5 H 0.067 0.933 6 C 0.031 3.969 7 N -0.933 5.933 8 Si 0.918 3.082 9 H -0.264 1.264 10 H -0.258 1.258 11 H -0.299 1.299 12 N -0.988 5.988 13 C 0.097 3.903 14 S 2.796 3.204 15 O -0.998 6.998 16 O -1.014 7.014 17 N -1.112 6.112 18 C 0.202 3.798 19 H 0.091 0.909 20 C -0.129 4.129 21 C -0.115 4.115 22 C -0.078 4.078 23 C -0.072 4.072 24 C -0.127 4.127 25 C -0.116 4.116 26 C -0.136 4.136 27 C -0.122 4.122 28 C -0.103 4.103 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.265 0.735 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.420 0.580 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.136 0.864 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.698 -4.624 -12.525 17.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.135 3.865 3 H 0.059 0.941 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.168 4.168 7 N -0.573 5.573 8 Si 0.747 3.253 9 H -0.189 1.189 10 H -0.183 1.183 11 H -0.227 1.227 12 N -0.829 5.829 13 C -0.049 4.049 14 S 2.805 3.195 15 O -0.982 6.982 16 O -0.998 6.998 17 N -0.871 5.871 18 C 0.096 3.904 19 H 0.109 0.891 20 C -0.168 4.168 21 C -0.153 4.153 22 C -0.115 4.115 23 C -0.072 4.072 24 C -0.145 4.145 25 C -0.134 4.134 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.105 4.105 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.254 0.746 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.165 0.835 44 H 0.166 0.834 45 H 0.154 0.846 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.251 -4.286 -13.189 17.858 hybrid contribution -0.529 1.087 1.056 1.605 sum 10.722 -3.199 -12.133 16.505 Atomic orbital electron populations 1.22384 0.97473 1.02353 0.99676 1.18860 0.92037 0.92480 0.83143 0.94138 1.21374 1.31167 1.13319 0.89100 0.91471 1.25452 0.96894 0.98708 0.95768 1.69966 1.47124 1.41822 0.98388 0.86331 0.80258 0.81527 0.77194 1.18948 1.18284 1.22709 1.57392 1.65236 1.22520 1.37718 1.21474 1.00734 0.80234 1.02428 1.01283 0.72945 0.72119 0.73191 1.93556 1.86391 1.76221 1.41986 1.93539 1.84554 1.34423 1.87289 1.55887 1.30844 1.16174 1.84237 1.19527 0.93085 0.82235 0.95593 0.89103 1.21945 1.01325 0.98680 0.94835 1.21533 0.95330 0.96271 1.02163 1.20551 0.97689 0.99846 0.93391 1.19892 0.92498 0.97663 0.97171 1.21466 0.98412 1.00028 0.94560 1.21421 0.98261 0.96566 0.97123 1.21326 0.93319 1.00639 1.00154 1.21231 0.98951 0.99273 0.94650 1.19815 0.95122 0.99737 0.95779 0.91102 0.94051 0.92913 0.92595 0.92018 0.91085 0.90432 0.74592 0.91588 0.91713 0.90249 0.91067 0.89917 0.88472 0.83511 0.83409 0.84635 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.52 8.67 71.98 0.62 -5.90 16 2 C 0.24 10.70 2.21 44.25 0.10 10.80 16 3 H 0.04 1.95 5.97 -2.39 -0.01 1.93 16 4 C -0.51 -25.76 8.57 25.60 0.22 -25.54 16 5 H 0.07 3.58 6.84 -2.91 -0.02 3.56 16 6 C 0.03 1.66 5.45 84.65 0.46 2.12 16 7 N -0.93 -53.60 13.96 21.44 0.30 -53.30 16 8 Si 0.92 42.77 24.37 68.60 1.67 44.44 16 9 H -0.26 -11.63 6.87 99.48 0.68 -10.95 16 10 H -0.26 -11.77 6.53 99.48 0.65 -11.12 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 12 N -0.99 -37.61 3.12 -520.45 -1.62 -39.23 16 13 C 0.10 3.12 9.28 127.77 1.19 4.30 16 14 S 2.80 103.29 5.99 -56.49 -0.34 102.95 16 15 O -1.00 -37.88 16.67 -128.00 -2.13 -40.02 16 16 O -1.01 -43.70 16.70 -128.00 -2.14 -45.84 16 17 N -1.11 -34.93 4.53 -172.97 -0.78 -35.72 16 18 C 0.20 5.75 2.81 44.13 0.12 5.88 16 19 H 0.09 2.60 6.19 -2.39 -0.01 2.58 16 20 C -0.13 -3.63 5.57 30.62 0.17 -3.46 16 21 C -0.11 -2.50 5.98 30.62 0.18 -2.32 16 22 C -0.08 -1.43 5.67 29.74 0.17 -1.26 16 23 C -0.07 -1.56 5.74 -19.86 -0.11 -1.68 16 24 C -0.13 -2.29 9.61 22.36 0.21 -2.08 16 25 C -0.12 -2.07 10.05 22.20 0.22 -1.84 16 26 C -0.14 -2.94 10.05 22.20 0.22 -2.72 16 27 C -0.12 -3.26 9.21 22.36 0.21 -3.06 16 28 C -0.10 -2.69 5.55 -19.86 -0.11 -2.80 16 29 H 0.07 2.68 7.67 -2.38 -0.02 2.66 16 30 H 0.04 1.74 3.27 -2.39 -0.01 1.73 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.07 1.99 6.43 -2.39 -0.02 1.97 16 35 H 0.08 2.64 7.02 -2.39 -0.02 2.62 16 36 H 0.42 12.25 8.96 -96.75 -0.87 11.39 16 37 H 0.07 1.92 8.10 -2.39 -0.02 1.90 16 38 H 0.06 2.19 7.40 -2.38 -0.02 2.17 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.10 1.34 8.13 -2.39 -0.02 1.32 16 43 H 0.15 1.81 8.05 -2.91 -0.02 1.79 16 44 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 45 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 46 H 0.10 3.04 7.61 -2.91 -0.02 3.01 16 Total: -1.00 -65.89 367.00 -1.12 -67.01 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.05 Total: 29.24 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 3.88 Total: -29.54 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -2.11 Total: -128.25 kcal Atomic # 8 Polarization: -81.59 SS G_CDS: -4.27 Total: -85.86 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.67 Total: 44.44 kcal Atomic # 16 Polarization: 103.29 SS G_CDS: -0.34 Total: 102.95 kcal Total: -65.89 -1.12 -67.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332673732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.718 kcal (2) G-P(sol) polarization free energy of solvation -65.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds