Wall clock time and date at job start Tue Mar 31 2020 21:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46578 * 2 1 4 4 C 1.46500 * 119.99891 * 277.28820 * 3 2 1 5 5 C 1.50702 * 109.47251 * 275.00313 * 4 3 2 6 6 H 1.07991 * 119.99950 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00027 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99922 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47119 * 89.99919 * 9 7 5 11 11 H 1.48498 * 109.46916 * 210.00163 * 9 7 5 12 12 H 1.48507 * 109.47035 * 329.99738 * 9 7 5 13 13 S 1.65607 * 120.00193 * 97.29429 * 3 2 1 14 14 O 1.42102 * 106.39982 * 160.67836 * 13 3 2 15 15 O 1.42097 * 106.39832 * 27.75587 * 13 3 2 16 16 N 1.65601 * 107.21505 * 274.21611 * 13 3 2 17 17 C 1.46504 * 119.99839 * 96.13984 * 16 13 3 18 18 C 1.46502 * 120.00231 * 276.14248 * 16 13 3 19 19 H 1.09001 * 110.34476 * 2.48833 * 18 16 13 20 20 C 1.54340 * 110.30463 * 124.61738 * 18 16 13 21 21 C 1.54339 * 102.39207 * 145.26978 * 20 18 16 22 22 C 1.51371 * 105.25866 * 333.60461 * 21 20 18 23 23 C 1.38301 * 130.55729 * 197.15180 * 22 21 20 24 24 C 1.38101 * 120.28351 * 180.02562 * 23 22 21 25 25 C 1.38260 * 119.93506 * 0.02562 * 24 23 22 26 26 C 1.38104 * 119.93297 * 0.02562 * 25 24 23 27 27 C 1.38464 * 109.62549 * 17.22925 * 22 21 20 28 28 H 1.09010 * 109.47216 * 305.67216 * 1 2 3 29 29 H 1.09003 * 109.47599 * 65.67999 * 1 2 3 30 30 H 1.09000 * 109.47132 * 185.68063 * 1 2 3 31 31 H 1.08994 * 109.47197 * 240.00010 * 2 1 3 32 32 H 1.08998 * 109.47723 * 119.99472 * 2 1 3 33 33 H 1.08997 * 109.47023 * 35.00590 * 4 3 2 34 34 H 1.09000 * 109.47186 * 155.00246 * 4 3 2 35 35 H 0.96997 * 119.99932 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47144 * 270.00082 * 17 16 13 37 37 H 1.08999 * 109.46807 * 30.00153 * 17 16 13 38 38 H 1.08998 * 109.46730 * 150.00046 * 17 16 13 39 39 H 1.09006 * 110.82439 * 27.04684 * 20 18 16 40 40 H 1.08998 * 110.82212 * 263.49549 * 20 18 16 41 41 H 1.09006 * 110.30611 * 92.57346 * 21 20 18 42 42 H 1.09003 * 110.30916 * 214.63032 * 21 20 18 43 43 H 1.08002 * 119.82484 * 0.06503 * 23 22 21 44 44 H 1.07999 * 120.03326 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.03358 * 180.02562 * 25 24 23 46 46 H 1.07994 * 119.88775 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1105 2.1255 -1.2585 5 6 3.4227 1.8143 -1.9311 6 1 4.1185 1.1309 -1.4673 7 6 3.7350 2.4022 -3.1386 8 7 4.8799 2.1302 -3.7257 9 14 2.5318 3.5848 -3.9405 10 1 2.8135 4.9673 -3.4772 11 1 2.6807 3.5173 -5.4164 12 1 1.1447 3.2099 -3.5652 13 16 2.4658 2.1013 1.4226 14 8 3.2903 3.2043 1.0719 15 8 2.8920 1.0554 2.2849 16 7 1.0964 2.7385 2.1015 17 6 0.3628 1.9814 3.1189 18 6 0.6184 4.0592 1.6849 19 1 1.2529 4.4597 0.8942 20 6 -0.8456 3.9718 1.2041 21 6 -1.4278 5.3238 1.6680 22 6 -0.5862 5.7327 2.8578 23 6 -0.8262 6.6644 3.8513 24 6 0.1031 6.8705 4.8520 25 6 1.2791 6.1436 4.8618 26 6 1.5224 5.2131 3.8706 27 6 0.5916 5.0048 2.8666 28 1 -0.3634 0.5993 0.8349 29 1 -0.3634 0.4232 -0.9365 30 1 -0.3633 -1.0226 0.1017 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.2888 1.8354 -1.9132 34 1 2.0518 3.1945 -1.0536 35 1 5.0998 2.5440 -4.5750 36 1 -0.3876 1.3558 2.6355 37 1 1.0576 1.3517 3.6745 38 1 -0.1275 2.6735 3.8035 39 1 -1.3627 3.1416 1.6855 40 1 -0.8923 3.8817 0.1189 41 1 -1.3438 6.0646 0.8728 42 1 -2.4699 5.2050 1.9648 43 1 -1.7447 7.2325 3.8445 44 1 -0.0886 7.5988 5.6260 45 1 2.0067 6.3031 5.6438 46 1 2.4410 4.6454 3.8792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336902480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:22 Heat of formation + Delta-G solvation = -41.650514 kcal Electronic energy + Delta-G solvation = -29060.008765 eV Core-core repulsion = 25269.471660 eV Total energy + Delta-G solvation = -3790.537105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35642 -36.80823 -36.74979 -36.17195 -35.24378 -34.10420 -32.59980 -31.05204 -30.27687 -29.00429 -27.57531 -27.15679 -25.18581 -22.95521 -22.73125 -21.59400 -21.01332 -20.58542 -18.53100 -17.57768 -17.05816 -16.76351 -16.56711 -15.81294 -15.40399 -15.21831 -15.00928 -14.33360 -14.19859 -13.95222 -13.69752 -13.51414 -13.27800 -13.03228 -12.82706 -12.71064 -12.55707 -12.33983 -12.21884 -12.02419 -11.97129 -11.83946 -11.46183 -11.44823 -11.35583 -11.13032 -11.08040 -11.04426 -10.96215 -10.74746 -10.49528 -10.39730 -10.18742 -9.56492 -9.02765 -8.87044 -8.62647 -8.60140 -8.13743 -6.09113 -4.08453 1.01660 1.29010 1.34606 3.25099 3.29832 3.31191 3.36139 3.69531 3.95575 4.29842 4.37067 4.45775 4.74480 4.88799 4.91992 5.01322 5.04298 5.08143 5.15368 5.22258 5.29881 5.42244 5.49473 5.53048 5.56046 5.62412 5.64647 5.68574 5.76719 5.86742 5.88556 5.92451 5.97589 6.06659 6.18470 6.22998 6.37364 6.43640 6.44914 6.50408 6.54586 6.69215 6.78236 6.91767 7.09473 7.41071 7.57543 8.48182 8.95762 9.49934 11.04518 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004579 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.902963 B = 6113.960725 C = 6735.080267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.984 5.984 4 C 0.229 3.771 5 C -0.532 4.532 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.870 3.130 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.264 1.264 13 S 2.776 3.224 14 O -0.960 6.960 15 O -0.989 6.989 16 N -1.006 6.006 17 C 0.088 3.912 18 C 0.189 3.811 19 H 0.113 0.887 20 C -0.129 4.129 21 C -0.081 4.081 22 C -0.092 4.092 23 C -0.112 4.112 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.090 4.090 27 C -0.098 4.098 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.265 0.735 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.341 4.804 14.531 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.009 4.009 3 N -0.825 5.825 4 C 0.105 3.895 5 C -0.572 4.572 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.697 3.303 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.189 1.189 13 S 2.785 3.215 14 O -0.943 6.943 15 O -0.973 6.973 16 N -0.842 5.842 17 C -0.058 4.058 18 C 0.082 3.918 19 H 0.131 0.869 20 C -0.168 4.168 21 C -0.118 4.118 22 C -0.092 4.092 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.108 4.108 27 C -0.099 4.099 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.141 0.859 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.330 4.849 14.720 21.799 hybrid contribution -0.802 0.701 -0.704 1.277 sum -16.132 5.550 14.016 22.079 Atomic orbital electron populations 1.22288 0.97169 1.01386 1.02185 1.21161 0.93034 0.82882 1.03851 1.57544 1.80911 1.21387 1.22651 1.19402 0.98330 0.90616 0.81145 1.21379 1.02022 1.28413 1.05342 0.90470 1.24862 0.95122 0.96093 0.96798 1.69891 1.22197 1.43717 1.17471 0.86947 0.82031 0.82335 0.79000 1.19764 1.20957 1.18898 1.02196 0.73231 0.73332 0.72709 1.93630 1.63769 1.53498 1.83447 1.93517 1.79943 1.57469 1.66408 1.58222 1.47235 1.25929 1.52844 1.21461 0.97285 0.95932 0.91101 1.20389 0.96464 0.80780 0.94155 0.86905 1.22705 0.94504 0.97457 1.02115 1.21041 0.98690 0.97077 0.95025 1.20561 0.95888 0.96603 0.96173 1.20509 0.99684 0.98288 0.94484 1.21019 0.94261 0.99799 0.98595 1.21051 0.97568 0.96649 0.98856 1.20675 0.98721 0.97741 0.93660 1.20822 0.94770 0.97842 0.96506 0.92962 0.92189 0.92172 0.89531 0.90453 0.94879 0.95482 0.92517 0.92928 0.90184 0.91198 0.89881 0.89668 0.89836 0.90556 0.86407 0.86061 0.85916 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.22 37.16 0.38 -1.82 16 2 C 0.12 1.95 6.42 -4.04 -0.03 1.93 16 3 N -0.98 -19.57 2.83 -115.67 -0.33 -19.90 16 4 C 0.23 5.25 4.18 -5.19 -0.02 5.23 16 5 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -27.43 13.96 55.43 0.77 -26.66 16 9 Si 0.87 20.84 27.47 -169.99 -4.67 16.17 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 13 S 2.78 54.50 6.04 -107.50 -0.65 53.85 16 14 O -0.96 -22.58 15.80 -57.17 -0.90 -23.48 16 15 O -0.99 -20.54 15.28 -57.17 -0.87 -21.41 16 16 N -1.01 -14.79 3.17 -114.74 -0.36 -15.15 16 17 C 0.09 1.03 9.32 59.85 0.56 1.58 16 18 C 0.19 2.64 3.22 -68.05 -0.22 2.42 16 19 H 0.11 1.80 7.20 -51.93 -0.37 1.43 16 20 C -0.13 -1.40 6.66 -25.33 -0.17 -1.56 16 21 C -0.08 -0.78 6.76 -26.85 -0.18 -0.96 16 22 C -0.09 -1.04 6.15 -104.19 -0.64 -1.68 16 23 C -0.11 -1.13 10.03 -39.61 -0.40 -1.53 16 24 C -0.12 -1.17 10.05 -39.62 -0.40 -1.57 16 25 C -0.12 -1.36 10.05 -39.62 -0.40 -1.76 16 26 C -0.09 -1.19 10.00 -39.54 -0.40 -1.59 16 27 C -0.10 -1.30 4.81 -104.12 -0.50 -1.80 16 28 H 0.05 0.61 6.43 -51.92 -0.33 0.27 16 29 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.52 8.12 -51.93 -0.42 1.10 16 32 H 0.08 1.24 6.94 -51.93 -0.36 0.88 16 33 H 0.03 0.72 7.10 -51.93 -0.37 0.35 16 34 H 0.03 0.63 6.92 -51.93 -0.36 0.27 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.05 0.52 6.26 -51.93 -0.33 0.19 16 37 H 0.08 0.98 7.00 -51.93 -0.36 0.62 16 38 H 0.07 0.73 7.33 -51.93 -0.38 0.35 16 39 H 0.08 0.81 6.86 -51.93 -0.36 0.45 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -34.39 377.97 -11.20 -45.59 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.04 Total: 1.77 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.85 Total: -16.48 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.08 Total: -61.70 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -1.78 Total: -44.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.67 Total: 16.17 kcal Atomic # 16 Polarization: 54.50 SS G_CDS: -0.65 Total: 53.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.39 -11.20 -45.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336902480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.939 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds