Wall clock time and date at job start Tue Mar 31 2020 21:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46578 * 2 1 4 4 C 1.46500 * 119.99891 * 277.28820 * 3 2 1 5 5 C 1.50702 * 109.47251 * 275.00313 * 4 3 2 6 6 H 1.07991 * 119.99950 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00027 * 179.97438 * 5 4 3 8 8 N 1.31507 * 119.99813 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99922 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47119 * 89.99919 * 9 7 5 11 11 H 1.48498 * 109.46916 * 210.00163 * 9 7 5 12 12 H 1.48507 * 109.47035 * 329.99738 * 9 7 5 13 13 S 1.65607 * 120.00193 * 97.29429 * 3 2 1 14 14 O 1.42102 * 106.39982 * 160.67836 * 13 3 2 15 15 O 1.42097 * 106.39832 * 27.75587 * 13 3 2 16 16 N 1.65601 * 107.21505 * 274.21611 * 13 3 2 17 17 C 1.46504 * 119.99839 * 96.13984 * 16 13 3 18 18 C 1.46502 * 120.00231 * 276.14248 * 16 13 3 19 19 H 1.09001 * 110.34476 * 2.48833 * 18 16 13 20 20 C 1.54340 * 110.30463 * 124.61738 * 18 16 13 21 21 C 1.54339 * 102.39207 * 145.26978 * 20 18 16 22 22 C 1.51371 * 105.25866 * 333.60461 * 21 20 18 23 23 C 1.38301 * 130.55729 * 197.15180 * 22 21 20 24 24 C 1.38101 * 120.28351 * 180.02562 * 23 22 21 25 25 C 1.38260 * 119.93506 * 0.02562 * 24 23 22 26 26 C 1.38104 * 119.93297 * 0.02562 * 25 24 23 27 27 C 1.38464 * 109.62549 * 17.22925 * 22 21 20 28 28 H 1.09010 * 109.47216 * 305.67216 * 1 2 3 29 29 H 1.09003 * 109.47599 * 65.67999 * 1 2 3 30 30 H 1.09000 * 109.47132 * 185.68063 * 1 2 3 31 31 H 1.08994 * 109.47197 * 240.00010 * 2 1 3 32 32 H 1.08998 * 109.47723 * 119.99472 * 2 1 3 33 33 H 1.08997 * 109.47023 * 35.00590 * 4 3 2 34 34 H 1.09000 * 109.47186 * 155.00246 * 4 3 2 35 35 H 0.96997 * 119.99932 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47144 * 270.00082 * 17 16 13 37 37 H 1.08999 * 109.46807 * 30.00153 * 17 16 13 38 38 H 1.08998 * 109.46730 * 150.00046 * 17 16 13 39 39 H 1.09006 * 110.82439 * 27.04684 * 20 18 16 40 40 H 1.08998 * 110.82212 * 263.49549 * 20 18 16 41 41 H 1.09006 * 110.30611 * 92.57346 * 21 20 18 42 42 H 1.09003 * 110.30916 * 214.63032 * 21 20 18 43 43 H 1.08002 * 119.82484 * 0.06503 * 23 22 21 44 44 H 1.07999 * 120.03326 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.03358 * 180.02562 * 25 24 23 46 46 H 1.07994 * 119.88775 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1105 2.1255 -1.2585 5 6 3.4227 1.8143 -1.9311 6 1 4.1185 1.1309 -1.4673 7 6 3.7350 2.4022 -3.1386 8 7 4.8799 2.1302 -3.7257 9 14 2.5318 3.5848 -3.9405 10 1 2.8135 4.9673 -3.4772 11 1 2.6807 3.5173 -5.4164 12 1 1.1447 3.2099 -3.5652 13 16 2.4658 2.1013 1.4226 14 8 3.2903 3.2043 1.0719 15 8 2.8920 1.0554 2.2849 16 7 1.0964 2.7385 2.1015 17 6 0.3628 1.9814 3.1189 18 6 0.6184 4.0592 1.6849 19 1 1.2529 4.4597 0.8942 20 6 -0.8456 3.9718 1.2041 21 6 -1.4278 5.3238 1.6680 22 6 -0.5862 5.7327 2.8578 23 6 -0.8262 6.6644 3.8513 24 6 0.1031 6.8705 4.8520 25 6 1.2791 6.1436 4.8618 26 6 1.5224 5.2131 3.8706 27 6 0.5916 5.0048 2.8666 28 1 -0.3634 0.5993 0.8349 29 1 -0.3634 0.4232 -0.9365 30 1 -0.3633 -1.0226 0.1017 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.2888 1.8354 -1.9132 34 1 2.0518 3.1945 -1.0536 35 1 5.0998 2.5440 -4.5750 36 1 -0.3876 1.3558 2.6355 37 1 1.0576 1.3517 3.6745 38 1 -0.1275 2.6735 3.8035 39 1 -1.3627 3.1416 1.6855 40 1 -0.8923 3.8817 0.1189 41 1 -1.3438 6.0646 0.8728 42 1 -2.4699 5.2050 1.9648 43 1 -1.7447 7.2325 3.8445 44 1 -0.0886 7.5988 5.6260 45 1 2.0067 6.3031 5.6438 46 1 2.4410 4.6454 3.8792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336902480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:21 Heat of formation + Delta-G solvation = -64.617438 kcal Electronic energy + Delta-G solvation = -29061.004686 eV Core-core repulsion = 25269.471660 eV Total energy + Delta-G solvation = -3791.533026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22867 -38.44907 -37.83473 -37.65030 -36.93569 -35.05121 -34.69040 -31.95384 -31.77748 -29.82401 -28.99025 -28.47780 -26.19356 -24.62830 -23.58290 -23.16190 -21.83364 -21.58427 -19.88276 -19.27033 -18.77070 -18.44054 -17.71624 -17.07250 -16.62640 -16.18959 -16.11484 -15.89640 -15.53947 -15.04063 -14.82460 -14.72307 -14.57770 -14.28684 -14.08759 -13.99245 -13.70811 -13.60106 -13.57546 -13.48434 -13.34379 -13.14001 -12.80051 -12.73139 -12.71989 -12.52095 -12.29535 -12.20082 -12.12105 -12.05345 -11.86210 -11.72447 -11.65476 -11.58272 -10.79653 -10.12019 -9.80010 -9.73671 -9.46396 -8.30343 -6.36495 -0.47654 0.41791 0.47753 1.34743 1.39765 1.47769 1.95908 2.34408 2.47717 2.84460 3.03716 3.28772 3.38076 3.58971 3.87132 3.96910 4.10575 4.13353 4.16862 4.21908 4.35016 4.44454 4.44747 4.56978 4.62747 4.63162 4.72144 4.76582 4.80394 4.90611 4.95028 4.97632 5.04167 5.05975 5.08029 5.16117 5.22508 5.30925 5.42888 5.44591 5.48653 5.51015 5.59028 5.61417 5.73933 5.86751 6.10951 6.29623 6.66232 7.26630 8.87444 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004579 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.902963 B = 6113.960725 C = 6735.080267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.991 5.991 4 C 0.240 3.760 5 C -0.546 4.546 6 H 0.024 0.976 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.222 1.222 13 S 2.784 3.216 14 O -1.010 7.010 15 O -1.010 7.010 16 N -0.992 5.992 17 C 0.084 3.916 18 C 0.180 3.820 19 H 0.082 0.918 20 C -0.123 4.123 21 C -0.075 4.075 22 C -0.093 4.093 23 C -0.111 4.111 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.122 4.122 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.030 0.970 35 H 0.268 0.732 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.148 0.852 44 H 0.151 0.849 45 H 0.137 0.863 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.454 6.381 15.374 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.831 5.831 4 C 0.115 3.885 5 C -0.585 4.585 6 H 0.042 0.958 7 C -0.190 4.190 8 N -0.589 5.589 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.145 1.145 13 S 2.795 3.205 14 O -0.994 6.994 15 O -0.994 6.994 16 N -0.832 5.832 17 C -0.061 4.061 18 C 0.074 3.926 19 H 0.100 0.900 20 C -0.162 4.162 21 C -0.112 4.112 22 C -0.093 4.093 23 C -0.128 4.128 24 C -0.132 4.132 25 C -0.149 4.149 26 C -0.136 4.136 27 C -0.124 4.124 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.166 0.834 44 H 0.169 0.831 45 H 0.155 0.845 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.455 6.385 15.590 26.499 hybrid contribution 0.898 0.176 -0.811 1.223 sum -19.556 6.561 14.779 25.376 Atomic orbital electron populations 1.22204 0.93303 1.03506 1.02912 1.21401 0.96219 0.81054 1.03106 1.57481 1.81444 1.22634 1.21557 1.19144 0.95938 0.91129 0.82310 1.21723 1.03614 1.27362 1.05786 0.95780 1.25954 0.97354 0.98242 0.97496 1.70075 1.24925 1.45652 1.18273 0.85818 0.81172 0.78996 0.77740 1.19601 1.20365 1.14465 1.01599 0.73873 0.72428 0.72610 1.93557 1.66392 1.55174 1.84243 1.93474 1.81010 1.58133 1.66753 1.57748 1.46145 1.26448 1.52828 1.21700 0.97316 0.96277 0.90777 1.20586 0.98037 0.79978 0.94042 0.89964 1.22736 0.91888 0.99065 1.02497 1.21078 0.99645 0.96196 0.94327 1.20841 0.95192 0.96327 0.96986 1.20900 1.00656 0.97671 0.93607 1.21404 0.93276 0.99438 0.99099 1.21276 0.98745 0.96237 0.98604 1.20719 0.98382 0.99144 0.95394 1.20843 0.96017 0.98946 0.96550 0.91340 0.92117 0.89505 0.91303 0.90344 0.92370 0.95179 0.92349 0.90063 0.91203 0.89454 0.88185 0.89237 0.89200 0.87780 0.83421 0.83091 0.84538 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.22 71.98 0.74 -2.91 16 2 C 0.11 3.56 6.42 86.38 0.55 4.12 16 3 N -0.99 -39.99 2.83 -519.86 -1.47 -41.46 16 4 C 0.24 11.05 4.18 85.63 0.36 11.41 16 5 C -0.55 -32.25 9.94 25.60 0.25 -31.99 16 6 H 0.02 1.61 8.06 -2.92 -0.02 1.59 16 7 C 0.01 0.43 5.47 84.66 0.46 0.89 16 8 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 9 Si 0.94 42.73 27.47 68.60 1.88 44.61 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.22 -8.54 6.54 99.48 0.65 -7.89 16 13 S 2.78 113.46 6.04 -56.49 -0.34 113.12 16 14 O -1.01 -50.61 15.80 -128.00 -2.02 -52.63 16 15 O -1.01 -43.65 15.28 -128.00 -1.96 -45.61 16 16 N -0.99 -28.74 3.17 -516.92 -1.64 -30.38 16 17 C 0.08 1.80 9.32 127.77 1.19 2.99 16 18 C 0.18 4.88 3.22 44.91 0.14 5.02 16 19 H 0.08 2.71 7.20 -2.39 -0.02 2.69 16 20 C -0.12 -2.26 6.66 31.50 0.21 -2.05 16 21 C -0.08 -1.14 6.76 30.52 0.21 -0.93 16 22 C -0.09 -1.84 6.15 -19.58 -0.12 -1.96 16 23 C -0.11 -1.81 10.03 22.25 0.22 -1.59 16 24 C -0.11 -1.90 10.05 22.24 0.22 -1.68 16 25 C -0.13 -2.75 10.05 22.24 0.22 -2.53 16 26 C -0.12 -3.19 10.00 22.30 0.22 -2.97 16 27 C -0.12 -3.13 4.81 -19.54 -0.09 -3.23 16 28 H 0.07 1.33 6.43 -2.38 -0.02 1.31 16 29 H 0.06 1.39 8.08 -2.39 -0.02 1.38 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 32 H 0.08 2.54 6.94 -2.39 -0.02 2.53 16 33 H 0.06 2.40 7.10 -2.39 -0.02 2.39 16 34 H 0.03 1.39 6.92 -2.39 -0.02 1.37 16 35 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.08 1.30 6.26 -2.39 -0.01 1.29 16 37 H 0.07 1.67 7.00 -2.39 -0.02 1.65 16 38 H 0.09 1.62 7.33 -2.39 -0.02 1.61 16 39 H 0.10 1.49 6.86 -2.38 -0.02 1.47 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 43 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 45 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 46 H 0.09 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -81.27 377.97 0.46 -80.81 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.91 Total: 19.50 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 4.80 Total: -27.41 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -2.81 Total: -132.39 kcal Atomic # 8 Polarization: -94.26 SS G_CDS: -3.98 Total: -98.24 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.88 Total: 44.61 kcal Atomic # 16 Polarization: 113.46 SS G_CDS: -0.34 Total: 113.12 kcal Total: -81.27 0.46 -80.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336902480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.191 kcal (2) G-P(sol) polarization free energy of solvation -81.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds