Wall clock time and date at job start Tue Mar 31 2020 21:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47196 * 2 1 4 4 C 1.46504 * 119.99803 * 84.99949 * 3 2 1 5 5 C 1.50689 * 109.46944 * 84.94892 * 4 3 2 6 6 H 1.08005 * 120.00192 * 3.08162 * 5 4 3 7 7 C 1.37880 * 120.00197 * 183.35970 * 5 4 3 8 8 N 1.31517 * 119.99510 * 353.86251 * 7 5 4 9 9 Si 1.86798 * 120.00237 * 173.85920 * 7 5 4 10 10 H 1.48497 * 109.47347 * 5.01449 * 9 7 5 11 11 H 1.48498 * 109.46792 * 125.01200 * 9 7 5 12 12 H 1.48500 * 109.47048 * 245.00852 * 9 7 5 13 13 S 1.65597 * 120.00090 * 265.00609 * 3 2 1 14 14 O 1.42097 * 106.40531 * 28.58911 * 13 3 2 15 15 O 1.42098 * 106.40326 * 161.51222 * 13 3 2 16 16 N 1.65601 * 107.21625 * 275.05056 * 13 3 2 17 17 C 1.46496 * 120.00078 * 269.15549 * 16 13 3 18 18 C 1.46498 * 120.00254 * 89.15306 * 16 13 3 19 19 H 1.09009 * 110.26586 * 356.56297 * 18 16 13 20 20 C 1.54339 * 110.30464 * 234.49091 * 18 16 13 21 21 C 1.54351 * 102.39166 * 214.72486 * 20 18 16 22 22 C 1.51370 * 105.16808 * 26.34837 * 21 20 18 23 23 C 1.38496 * 130.39271 * 162.81439 * 22 21 20 24 24 C 1.38104 * 120.21535 * 179.97438 * 23 22 21 25 25 C 1.38256 * 119.93761 * 359.97438 * 24 23 22 26 26 C 1.38105 * 119.93223 * 0.02562 * 25 24 23 27 27 C 1.38361 * 120.26170 * 359.91137 * 26 25 24 28 28 H 1.09003 * 109.47408 * 299.99945 * 1 2 3 29 29 H 1.08994 * 109.47115 * 59.99695 * 1 2 3 30 30 H 1.09002 * 109.47132 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47253 * 240.00580 * 2 1 3 32 32 H 1.08998 * 109.47689 * 119.99861 * 2 1 3 33 33 H 1.08995 * 109.47139 * 324.94433 * 4 3 2 34 34 H 1.08998 * 109.46746 * 204.94703 * 4 3 2 35 35 H 0.97001 * 119.99760 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47572 * 89.99699 * 17 16 13 37 37 H 1.09003 * 109.47690 * 210.00161 * 17 16 13 38 38 H 1.09007 * 109.47149 * 329.99838 * 17 16 13 39 39 H 1.08991 * 110.82429 * 332.95041 * 20 18 16 40 40 H 1.09007 * 110.82524 * 96.50542 * 20 18 16 41 41 H 1.09000 * 110.30171 * 145.26710 * 21 20 18 42 42 H 1.08999 * 110.30687 * 267.32590 * 21 20 18 43 43 H 1.07999 * 119.89519 * 0.02562 * 23 22 21 44 44 H 1.08001 * 120.03366 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.03220 * 180.02562 * 25 24 23 46 46 H 1.07998 * 119.89241 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4941 1.7878 1.8829 6 1 4.1917 1.1493 1.3612 7 6 3.8237 2.3046 3.1180 8 7 3.0264 3.1725 3.7016 9 14 5.4026 1.7721 3.9623 10 1 6.1768 0.8895 3.0530 11 1 6.2131 2.9704 4.2974 12 1 5.0732 1.0333 5.2076 13 16 2.4121 2.1203 -1.4287 14 8 1.5984 1.5214 -2.4279 15 8 2.4216 3.5172 -1.1685 16 7 3.9740 1.7001 -1.7837 17 6 5.0819 2.5374 -1.3173 18 6 4.2480 0.4910 -2.5642 19 1 3.3200 -0.0407 -2.7750 20 6 5.2298 -0.4259 -1.8045 21 6 6.0578 -1.0461 -2.9501 22 6 5.9958 -0.0357 -4.0755 23 6 6.7867 0.1001 -5.2043 24 6 6.5392 1.1143 -6.1084 25 6 5.4985 1.9971 -5.8872 26 6 4.7087 1.8633 -4.7622 27 6 4.9534 0.8474 -3.8552 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3612 1.8105 1.9449 34 1 2.0931 3.1803 1.0755 35 1 3.2580 3.5359 4.5706 36 1 5.4063 2.1963 -0.3341 37 1 5.9127 2.4650 -2.0192 38 1 4.7512 3.5740 -1.2514 39 1 5.8661 0.1558 -1.1376 40 1 4.6921 -1.1976 -1.2535 41 1 7.0898 -1.1959 -2.6327 42 1 5.6184 -1.9926 -3.2649 43 1 7.5991 -0.5898 -5.3785 44 1 7.1581 1.2177 -6.9874 45 1 5.3033 2.7905 -6.5934 46 1 3.8961 2.5535 -4.5898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336902482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:24 Heat of formation + Delta-G solvation = -67.321026 kcal Electronic energy + Delta-G solvation = -29060.948345 eV Core-core repulsion = 25269.298083 eV Total energy + Delta-G solvation = -3791.650262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.21127 -38.41436 -37.72328 -37.61681 -36.92792 -35.01033 -34.66071 -31.90082 -31.52574 -29.81012 -28.61491 -28.35679 -26.17594 -24.91849 -23.55674 -23.28168 -21.81577 -21.57916 -19.91089 -18.84062 -18.68959 -18.21571 -17.70473 -17.07462 -16.59763 -16.26479 -16.02245 -15.87215 -15.42336 -15.05880 -14.78746 -14.71769 -14.56762 -14.09832 -13.94883 -13.84165 -13.66128 -13.58389 -13.56915 -13.38908 -13.28716 -13.04682 -12.76545 -12.71124 -12.69721 -12.64820 -12.33029 -12.22648 -12.12971 -12.08684 -11.87111 -11.69809 -11.61692 -11.54903 -10.55748 -10.06499 -9.77552 -9.71504 -9.44740 -8.14206 -6.26742 -0.37267 0.43896 0.48855 1.44452 1.46172 1.57270 1.94195 2.44187 2.50948 2.85783 3.17493 3.33944 3.40534 3.61205 3.88586 4.01274 4.11699 4.15105 4.17344 4.23825 4.35064 4.42051 4.47034 4.61845 4.64969 4.67739 4.71605 4.77502 4.91789 4.95619 4.96831 5.02253 5.09300 5.13197 5.16944 5.24782 5.27395 5.33633 5.39584 5.49676 5.57029 5.62307 5.62921 5.76752 5.79822 6.00159 6.12218 6.13873 6.85179 7.42846 8.94628 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012667 B = 0.004646 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.985203 B = 6024.667842 C = 6924.883498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.994 5.994 4 C 0.262 3.738 5 C -0.535 4.535 6 H 0.076 0.924 7 C 0.010 3.990 8 N -0.931 5.931 9 Si 0.959 3.041 10 H -0.254 1.254 11 H -0.287 1.287 12 H -0.281 1.281 13 S 2.789 3.211 14 O -1.002 7.002 15 O -1.016 7.016 16 N -0.991 5.991 17 C 0.097 3.903 18 C 0.182 3.818 19 H 0.103 0.897 20 C -0.128 4.128 21 C -0.073 4.073 22 C -0.094 4.094 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.130 4.130 26 C -0.117 4.117 27 C -0.121 4.121 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.020 0.980 34 H 0.012 0.988 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.138 0.862 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.097 -10.910 -15.908 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.835 5.835 4 C 0.138 3.862 5 C -0.574 4.574 6 H 0.094 0.906 7 C -0.189 4.189 8 N -0.571 5.571 9 Si 0.784 3.216 10 H -0.178 1.178 11 H -0.214 1.214 12 H -0.207 1.207 13 S 2.800 3.200 14 O -0.986 6.986 15 O -1.001 7.001 16 N -0.830 5.830 17 C -0.048 4.048 18 C 0.076 3.924 19 H 0.121 0.879 20 C -0.167 4.167 21 C -0.110 4.110 22 C -0.095 4.095 23 C -0.130 4.130 24 C -0.133 4.133 25 C -0.148 4.148 26 C -0.135 4.135 27 C -0.123 4.123 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.038 0.962 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.164 0.836 44 H 0.169 0.831 45 H 0.156 0.844 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.482 -10.222 -16.246 20.601 hybrid contribution 0.321 0.437 1.147 1.268 sum 7.803 -9.786 -15.099 19.612 Atomic orbital electron populations 1.22209 0.96022 1.03308 1.01262 1.21264 0.94566 0.81240 1.03266 1.57679 1.79158 1.24084 1.22599 1.18710 0.96775 0.90574 0.80140 1.21841 1.02013 1.30142 1.03403 0.90591 1.25818 1.00357 0.94559 0.98138 1.70102 1.39812 1.30232 1.16936 0.85488 0.79352 0.78027 0.78684 1.17754 1.21365 1.20704 1.01444 0.73396 0.72522 0.72663 1.93515 1.67374 1.79015 1.58704 1.93507 1.87193 1.33338 1.86023 1.57654 1.23706 1.35289 1.66378 1.21415 0.89660 0.93625 1.00098 1.20623 0.99650 0.84577 0.87522 0.87947 1.22731 0.97555 0.98574 0.97835 1.21059 1.01946 0.96979 0.91005 1.20872 0.94830 0.96958 0.96838 1.20951 0.99817 0.99060 0.93128 1.21401 0.97423 0.94504 0.99949 1.21282 0.96035 1.00522 0.96973 1.20680 0.99963 0.97818 0.95078 1.20816 0.98128 0.97094 0.96292 0.93470 0.93582 0.88853 0.89850 0.89749 0.96162 0.97041 0.92720 0.92175 0.89582 0.92149 0.90308 0.88711 0.88751 0.88187 0.83551 0.83096 0.84383 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.21 10.24 71.98 0.74 -4.48 16 2 C 0.12 4.06 6.06 86.38 0.52 4.58 16 3 N -0.99 -41.41 2.83 -519.86 -1.47 -42.88 16 4 C 0.26 13.33 5.42 85.63 0.46 13.80 16 5 C -0.53 -27.50 9.38 25.60 0.24 -27.26 16 6 H 0.08 3.64 7.57 -2.91 -0.02 3.62 16 7 C 0.01 0.56 5.45 84.65 0.46 1.02 16 8 N -0.93 -54.05 13.30 21.45 0.29 -53.76 16 9 Si 0.96 41.38 29.54 68.60 2.03 43.40 16 10 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 S 2.79 115.58 6.03 -56.49 -0.34 115.24 16 14 O -1.00 -41.49 15.82 -128.00 -2.02 -43.52 16 15 O -1.02 -50.51 15.19 -128.00 -1.94 -52.46 16 16 N -0.99 -33.70 3.17 -516.92 -1.64 -35.35 16 17 C 0.10 3.24 9.36 127.77 1.20 4.43 16 18 C 0.18 5.08 3.22 44.91 0.14 5.22 16 19 H 0.10 2.90 7.06 -2.38 -0.02 2.88 16 20 C -0.13 -2.83 6.66 31.51 0.21 -2.62 16 21 C -0.07 -1.24 6.77 30.52 0.21 -1.03 16 22 C -0.09 -1.99 6.14 -19.55 -0.12 -2.11 16 23 C -0.11 -1.96 10.04 22.30 0.22 -1.73 16 24 C -0.11 -1.99 10.05 22.24 0.22 -1.77 16 25 C -0.13 -2.78 10.05 22.24 0.22 -2.55 16 26 C -0.12 -3.18 9.99 22.27 0.22 -2.96 16 27 C -0.12 -3.22 4.86 -19.59 -0.10 -3.31 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.50 8.01 -2.39 -0.02 1.48 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 31 H 0.08 2.34 7.75 -2.39 -0.02 2.32 16 32 H 0.08 2.74 8.11 -2.39 -0.02 2.73 16 33 H 0.02 1.09 8.11 -2.39 -0.02 1.07 16 34 H 0.01 0.67 6.88 -2.39 -0.02 0.66 16 35 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.06 2.06 7.67 -2.39 -0.02 2.04 16 37 H 0.09 2.42 7.37 -2.39 -0.02 2.40 16 38 H 0.06 2.23 7.01 -2.38 -0.02 2.22 16 39 H 0.08 1.90 6.83 -2.39 -0.02 1.89 16 40 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 44 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 45 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 46 H 0.10 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -69.48 384.50 0.71 -68.77 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.96 Total: 21.33 kcal Atomic # 6 Polarization: -25.64 SS G_CDS: 4.86 Total: -20.78 kcal Atomic # 7 Polarization: -129.17 SS G_CDS: -2.82 Total: -131.99 kcal Atomic # 8 Polarization: -92.00 SS G_CDS: -3.97 Total: -95.97 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 115.58 SS G_CDS: -0.34 Total: 115.24 kcal Total: -69.48 0.71 -68.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336902482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.446 kcal (2) G-P(sol) polarization free energy of solvation -69.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds