Wall clock time and date at job start Tue Mar 31 2020 21:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47003 * 2 1 4 4 C 1.46503 * 119.99424 * 85.00392 * 3 2 1 5 5 C 1.50699 * 109.46825 * 274.99799 * 4 3 2 6 6 H 1.07999 * 120.00803 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00186 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00030 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 89.99863 * 9 7 5 11 11 H 1.48503 * 109.47261 * 330.00044 * 9 7 5 12 12 H 1.48500 * 109.47454 * 210.00037 * 9 7 5 13 13 S 1.65597 * 120.00274 * 265.00473 * 3 2 1 14 14 O 1.42097 * 106.40126 * 23.53757 * 13 3 2 15 15 O 1.42105 * 106.40049 * 156.45912 * 13 3 2 16 16 N 1.65596 * 107.21591 * 269.99752 * 13 3 2 17 17 C 1.47424 * 125.65015 * 90.02614 * 16 13 3 18 18 C 1.54906 * 104.83670 * 155.83299 * 17 16 13 19 19 C 1.55162 * 101.57984 * 37.00936 * 18 17 16 20 20 C 1.47022 * 125.64989 * 269.71536 * 16 13 3 21 21 H 1.08997 * 109.88486 * 300.51445 * 20 16 13 22 22 C 1.50703 * 109.88243 * 61.68331 * 20 16 13 23 23 C 1.38230 * 119.99988 * 39.72508 * 22 20 16 24 24 C 1.38239 * 119.99683 * 179.81289 * 23 22 20 25 25 C 1.38233 * 120.00189 * 0.42030 * 24 23 22 26 26 C 1.38236 * 119.99627 * 359.81361 * 25 24 23 27 27 C 1.38233 * 120.00364 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47716 * 59.99843 * 1 2 3 29 29 H 1.09005 * 109.46836 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47030 * 299.99356 * 1 2 3 31 31 H 1.09007 * 109.47049 * 240.00632 * 2 1 3 32 32 H 1.08995 * 109.47716 * 120.00157 * 2 1 3 33 33 H 1.09004 * 109.46958 * 155.00211 * 4 3 2 34 34 H 1.08997 * 109.47731 * 34.99887 * 4 3 2 35 35 H 0.96998 * 120.00124 * 180.02562 * 8 7 5 36 36 H 1.08999 * 110.36648 * 274.67498 * 17 16 13 37 37 H 1.08999 * 110.36522 * 36.88480 * 17 16 13 38 38 H 1.09003 * 111.00619 * 155.08642 * 18 17 16 39 39 H 1.08999 * 111.00559 * 278.93917 * 18 17 16 40 40 H 1.08997 * 110.71831 * 82.86481 * 19 18 17 41 41 H 1.09005 * 110.72029 * 205.95973 * 19 18 17 42 42 H 1.08003 * 120.00213 * 359.97438 * 23 22 20 43 43 H 1.08007 * 119.99731 * 180.20744 * 24 23 22 44 44 H 1.08002 * 120.00174 * 179.78615 * 25 24 23 45 45 H 1.08006 * 119.99896 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00075 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7287 1.6357 6 1 -0.0229 2.5941 0.9949 7 6 0.7226 3.4678 2.7941 8 7 -0.4315 4.0086 3.1188 9 14 2.2081 3.7013 3.9023 10 1 2.9463 4.9222 3.4901 11 1 3.1014 2.5205 3.7880 12 1 1.7577 3.8467 5.3099 13 16 2.4120 2.1203 -1.4286 14 8 1.6867 1.4417 -2.4447 15 8 2.3055 3.5188 -1.1996 16 7 4.0142 1.8139 -1.7137 17 6 4.5490 0.6597 -2.4588 18 6 5.9330 1.1271 -2.9743 19 6 6.4340 1.9879 -1.7846 20 6 5.1387 2.6513 -1.2711 21 1 5.0421 3.6531 -1.6895 22 6 5.1641 2.7215 0.2340 23 6 4.8839 1.5943 0.9834 24 6 4.9110 1.6578 2.3641 25 6 5.2098 2.8508 2.9953 26 6 5.4853 3.9792 2.2459 27 6 5.4625 3.9146 0.8653 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.9079 2.8918 1.1514 34 1 2.4690 1.4182 2.0481 35 1 -0.5112 4.5289 3.9336 36 1 4.6608 -0.1997 -1.7978 37 1 3.8949 0.4118 -3.2948 38 1 6.5931 0.2770 -3.1468 39 1 5.8307 1.7297 -3.8768 40 1 6.8809 1.3589 -1.0148 41 1 7.1444 2.7410 -2.1257 42 1 4.6463 0.6633 0.4902 43 1 4.6953 0.7762 2.9496 44 1 5.2276 2.9013 4.0740 45 1 5.7184 4.9114 2.7391 46 1 5.6774 4.7963 0.2798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336904350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:28 Heat of formation + Delta-G solvation = -31.533751 kcal Electronic energy + Delta-G solvation = -30386.449352 eV Core-core repulsion = 26596.350942 eV Total energy + Delta-G solvation = -3790.098410 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.81102 -37.76503 -36.65199 -36.04382 -35.15522 -32.43808 -31.77759 -30.97283 -30.60570 -29.89406 -27.78665 -27.14052 -23.10330 -22.50060 -22.31459 -21.79326 -21.53063 -20.63800 -18.47568 -17.29730 -17.24986 -16.72022 -16.38159 -15.99999 -15.38746 -14.83044 -14.51707 -14.41340 -13.82537 -13.74722 -13.47934 -13.40443 -13.12907 -13.07742 -12.79347 -12.73439 -12.48633 -12.40204 -11.91264 -11.65797 -11.54856 -11.40293 -11.29947 -11.24779 -11.21593 -11.00503 -10.99099 -10.84869 -10.71427 -10.65644 -10.40005 -10.18727 -10.09772 -9.37549 -8.97424 -8.60153 -8.45445 -8.23223 -8.00847 -5.99326 -3.98361 1.10090 1.59906 1.71807 3.32964 3.37461 3.38046 3.46274 4.00451 4.14259 4.39457 4.47594 4.63011 4.72088 4.99809 5.05452 5.13495 5.26814 5.28957 5.34023 5.38844 5.40812 5.46705 5.63860 5.68434 5.75453 5.76143 5.82304 5.84177 5.89466 5.95124 6.09441 6.11751 6.22119 6.22881 6.34089 6.42080 6.51140 6.70858 6.74523 6.81376 6.86778 6.89882 7.07164 7.23108 7.26818 7.52163 7.69479 8.57278 9.04781 9.59748 11.12584 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.007591 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.260270 B = 3687.587779 C = 5152.089792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.136 3.864 3 N -0.984 5.984 4 C 0.230 3.770 5 C -0.527 4.527 6 H 0.078 0.922 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.856 3.144 10 H -0.272 1.272 11 H -0.240 1.240 12 H -0.294 1.294 13 S 2.789 3.211 14 O -0.990 6.990 15 O -0.955 6.955 16 N -1.018 6.018 17 C 0.115 3.885 18 C -0.128 4.128 19 C -0.117 4.117 20 C 0.196 3.804 21 H 0.085 0.915 22 C -0.119 4.119 23 C -0.091 4.091 24 C -0.111 4.111 25 C -0.109 4.109 26 C -0.125 4.125 27 C -0.097 4.097 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.834 -7.971 -6.739 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 N -0.825 5.825 4 C 0.107 3.893 5 C -0.566 4.566 6 H 0.096 0.904 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.683 3.317 10 H -0.197 1.197 11 H -0.164 1.164 12 H -0.221 1.221 13 S 2.799 3.201 14 O -0.974 6.974 15 O -0.939 6.939 16 N -0.856 5.856 17 C -0.010 4.010 18 C -0.167 4.167 19 C -0.156 4.156 20 C 0.089 3.911 21 H 0.103 0.897 22 C -0.120 4.120 23 C -0.110 4.110 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.143 4.143 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.060 -7.346 -7.156 19.055 hybrid contribution 0.562 0.155 1.147 1.287 sum 16.622 -7.191 -6.009 19.081 Atomic orbital electron populations 1.22255 0.95990 1.00807 1.04103 1.20963 0.95176 0.82033 1.00834 1.57606 1.78085 1.23005 1.23807 1.19653 0.97963 0.91262 0.80440 1.21489 0.95974 1.31489 1.07624 0.90422 1.24876 0.95692 0.94960 0.97576 1.69913 1.24196 1.34690 1.25049 0.87316 0.84076 0.80548 0.79757 1.19733 1.16429 1.22063 1.01772 0.71696 0.73682 0.72912 1.93533 1.69563 1.76643 1.57681 1.93624 1.84817 1.29979 1.85487 1.59607 1.23552 1.34313 1.68096 1.21982 0.95308 0.88313 0.95437 1.22766 0.95824 0.99957 0.98175 1.22678 0.95732 0.99368 0.97790 1.20109 0.86206 0.94960 0.89806 0.89686 1.20136 1.02427 0.94238 0.95212 1.20880 0.98381 0.97996 0.93697 1.21017 0.99423 0.97997 0.94474 1.21110 0.98642 0.93326 0.99685 1.21043 1.00961 0.98260 0.94020 1.20890 0.99368 0.96784 0.94539 0.92830 0.93151 0.89868 0.92232 0.91261 0.94387 0.95057 0.92849 0.91928 0.90151 0.90148 0.90631 0.90321 0.90221 0.86173 0.86261 0.86646 0.86349 0.86121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 9.83 37.16 0.37 -2.81 16 2 C 0.14 2.33 6.09 -4.04 -0.02 2.31 16 3 N -0.98 -19.92 2.37 -115.66 -0.27 -20.19 16 4 C 0.23 5.29 1.76 -5.19 -0.01 5.28 16 5 C -0.53 -14.94 8.97 -34.44 -0.31 -15.25 16 6 H 0.08 2.43 7.13 -52.49 -0.37 2.05 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.86 20.69 25.04 -169.99 -4.26 16.43 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.24 -5.04 3.81 56.52 0.22 -4.82 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 S 2.79 56.78 5.96 -107.50 -0.64 56.14 16 14 O -0.99 -21.16 16.43 -57.17 -0.94 -22.10 16 15 O -0.96 -23.45 16.69 -57.17 -0.95 -24.40 16 16 N -1.02 -15.36 2.72 -105.64 -0.29 -15.65 16 17 C 0.12 1.30 7.11 -2.53 -0.02 1.28 16 18 C -0.13 -1.10 7.08 -24.58 -0.17 -1.27 16 19 C -0.12 -1.10 6.45 -24.90 -0.16 -1.26 16 20 C 0.20 2.66 3.03 -68.11 -0.21 2.45 16 21 H 0.09 1.19 8.02 -51.93 -0.42 0.77 16 22 C -0.12 -1.80 3.43 -104.62 -0.36 -2.15 16 23 C -0.09 -1.36 6.03 -39.58 -0.24 -1.60 16 24 C -0.11 -1.70 6.99 -39.58 -0.28 -1.97 16 25 C -0.11 -1.72 6.55 -39.58 -0.26 -1.98 16 26 C -0.12 -1.95 9.82 -39.58 -0.39 -2.34 16 27 C -0.10 -1.50 9.48 -39.58 -0.38 -1.87 16 28 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.77 6.59 -51.93 -0.34 1.43 16 31 H 0.06 0.88 7.61 -51.92 -0.40 0.48 16 32 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 33 H 0.04 0.91 4.43 -51.93 -0.23 0.68 16 34 H 0.03 0.69 5.69 -51.93 -0.30 0.39 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.92 7.78 -51.93 -0.40 0.52 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.72 7.78 -51.93 -0.40 0.31 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.12 1.64 7.72 -52.48 -0.41 1.23 16 43 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 44 H 0.12 1.66 7.77 -52.49 -0.41 1.25 16 45 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 46 H 0.12 1.63 8.04 -52.49 -0.42 1.20 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -35.44 359.10 -10.91 -46.35 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.22 Total: 4.55 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.53 Total: -19.24 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: 0.21 Total: -63.15 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -1.89 Total: -46.50 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.26 Total: 16.43 kcal Atomic # 16 Polarization: 56.78 SS G_CDS: -0.64 Total: 56.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.44 -10.91 -46.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336904350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.816 kcal (2) G-P(sol) polarization free energy of solvation -35.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds