Wall clock time and date at job start Tue Mar 31 2020 21:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47039 * 2 1 4 4 C 1.46494 * 119.99925 * 275.00017 * 3 2 1 5 5 C 1.50699 * 109.47384 * 278.11545 * 4 3 2 6 6 H 1.08005 * 119.99284 * 1.37792 * 5 4 3 7 7 C 1.37870 * 120.00184 * 181.37359 * 5 4 3 8 8 N 1.31515 * 120.00230 * 5.86767 * 7 5 4 9 9 Si 1.86802 * 120.00141 * 185.85981 * 7 5 4 10 10 H 1.48505 * 109.47010 * 5.23890 * 9 7 5 11 11 H 1.48508 * 109.46911 * 125.23229 * 9 7 5 12 12 H 1.48493 * 109.47752 * 245.23541 * 9 7 5 13 13 S 1.65597 * 119.99681 * 94.99758 * 3 2 1 14 14 O 1.42098 * 106.40766 * 341.68750 * 13 3 2 15 15 O 1.42102 * 106.40357 * 208.76638 * 13 3 2 16 16 N 1.65599 * 107.21619 * 95.23082 * 13 3 2 17 17 C 1.46508 * 119.99976 * 273.85377 * 16 13 3 18 18 C 1.50704 * 112.84668 * 70.54644 * 17 16 13 19 19 C 1.38236 * 119.99911 * 65.81553 * 18 17 16 20 20 C 1.38235 * 119.99527 * 179.97438 * 19 18 17 21 21 C 1.38242 * 120.00013 * 359.97438 * 20 19 18 22 22 C 1.38237 * 120.00168 * 0.02562 * 21 20 19 23 23 C 1.38229 * 119.99934 * 359.97438 * 22 21 20 24 24 C 1.53777 * 113.69027 * 201.81188 * 17 16 13 25 25 C 1.53782 * 87.07944 * 89.12740 * 24 17 16 26 26 C 1.53779 * 113.61341 * 299.35173 * 17 16 13 27 27 H 1.09005 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47694 * 299.99886 * 1 2 3 29 29 H 1.08997 * 109.47120 * 60.00065 * 1 2 3 30 30 H 1.08995 * 109.47224 * 239.99938 * 2 1 3 31 31 H 1.08997 * 109.47120 * 119.99935 * 2 1 3 32 32 H 1.08997 * 109.47214 * 38.11772 * 4 3 2 33 33 H 1.09008 * 109.46793 * 158.11271 * 4 3 2 34 34 H 0.97005 * 120.00293 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00359 * 93.85933 * 16 13 3 36 36 H 1.07994 * 120.00173 * 359.97438 * 19 18 17 37 37 H 1.07995 * 119.99721 * 179.69556 * 20 19 18 38 38 H 1.08003 * 119.99457 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.99424 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.00428 * 180.02562 * 23 22 21 41 41 H 1.09006 * 113.61415 * 203.67496 * 24 17 16 42 42 H 1.08996 * 113.62015 * 334.57931 * 24 17 16 43 43 H 1.08993 * 113.62022 * 270.88142 * 25 24 17 44 44 H 1.09007 * 113.61270 * 139.97836 * 25 24 17 45 45 H 1.08997 * 113.61873 * 25.34356 * 26 17 16 46 46 H 1.09003 * 113.61382 * 156.16678 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4611 1.7302 -1.9198 6 1 4.1087 1.0023 -1.4538 7 6 3.8263 2.3132 -3.1146 8 7 3.0966 3.2816 -3.6240 9 14 5.3575 1.7277 -4.0101 10 1 5.9268 0.5533 -3.3014 11 1 5.0016 1.3425 -5.3995 12 1 6.3615 2.8214 -4.0414 13 16 2.4121 2.1202 1.4287 14 8 1.7848 1.3660 2.4568 15 8 2.1872 3.5101 1.2369 16 7 4.0438 1.9357 1.6425 17 6 4.5667 0.7253 2.2813 18 6 4.4324 -0.4992 1.4131 19 6 5.1463 -0.5914 0.2330 20 6 5.0235 -1.7148 -0.5631 21 6 4.1871 -2.7463 -0.1787 22 6 3.4732 -2.6540 1.0015 23 6 3.5960 -1.5306 1.7975 24 6 5.9702 0.9019 2.8843 25 6 5.2716 1.3479 4.1797 26 6 4.0606 0.5197 3.7188 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3305 1.8513 -1.9247 33 1 2.1475 3.1811 -1.0689 34 1 3.3537 3.6920 -4.4645 35 1 4.6534 2.6290 1.3449 36 1 5.7999 0.2142 -0.0671 37 1 5.5774 -1.7847 -1.4875 38 1 4.0909 -3.6238 -0.8009 39 1 2.8202 -3.4600 1.3018 40 1 3.0387 -1.4587 2.7197 41 1 6.5227 -0.0322 2.9855 42 1 6.5536 1.6905 2.4091 43 1 5.0765 2.4193 4.2241 44 1 5.7437 0.9648 5.0845 45 1 3.1024 0.9998 3.9173 46 1 4.0897 -0.5191 4.0476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336904893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:56 Heat of formation + Delta-G solvation = -26.046873 kcal Electronic energy + Delta-G solvation = -30174.925094 eV Core-core repulsion = 26385.064613 eV Total energy + Delta-G solvation = -3789.860481 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.22477 -37.86405 -36.55182 -35.86865 -35.17437 -32.69084 -32.37078 -30.75723 -30.58588 -29.81546 -26.55744 -25.78895 -24.76111 -23.06342 -22.08715 -21.62336 -21.37560 -19.50665 -18.50808 -17.14305 -17.03676 -16.66568 -16.25203 -15.88776 -15.38654 -15.03754 -14.64830 -14.54481 -14.24503 -13.80432 -13.57774 -13.30593 -13.14892 -12.88402 -12.55066 -12.31880 -12.08471 -11.98857 -11.87976 -11.63076 -11.59723 -11.45206 -11.31967 -11.24889 -11.04557 -10.96866 -10.89832 -10.82190 -10.55556 -10.43227 -10.31353 -10.10868 -9.88567 -9.70279 -9.09041 -8.54644 -8.45890 -8.45090 -7.92757 -6.08519 -4.12954 1.33166 1.61306 1.71257 3.22372 3.30537 3.32166 3.56286 4.00563 4.19976 4.37028 4.55406 4.70366 4.80167 4.88477 5.01227 5.22172 5.24947 5.26069 5.35762 5.41762 5.58976 5.74796 5.76556 5.78238 5.84937 5.86271 5.90457 5.93549 6.00076 6.18382 6.22741 6.24009 6.32413 6.39246 6.42313 6.51535 6.73378 6.75321 6.78527 6.82471 6.92451 7.26854 7.32461 7.44841 7.54293 7.75337 7.91261 8.21890 8.94166 9.52058 10.99743 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.006575 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.727091 B = 4257.525879 C = 4801.116061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.126 3.874 3 N -0.986 5.986 4 C 0.245 3.755 5 C -0.534 4.534 6 H 0.072 0.928 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.285 1.285 13 S 2.786 3.214 14 O -0.993 6.993 15 O -0.985 6.985 16 N -1.100 6.100 17 C 0.201 3.799 18 C -0.098 4.098 19 C -0.073 4.073 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.129 4.129 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.141 4.141 26 C -0.157 4.157 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.033 0.967 33 H 0.049 0.951 34 H 0.262 0.738 35 H 0.416 0.584 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.103 0.897 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -10.206 11.524 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.827 5.827 4 C 0.122 3.878 5 C -0.573 4.573 6 H 0.090 0.910 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.211 1.211 13 S 2.794 3.206 14 O -0.977 6.977 15 O -0.969 6.969 16 N -0.856 5.856 17 C 0.111 3.889 18 C -0.100 4.100 19 C -0.091 4.091 20 C -0.135 4.135 21 C -0.133 4.133 22 C -0.147 4.147 23 C -0.124 4.124 24 C -0.165 4.165 25 C -0.178 4.178 26 C -0.196 4.196 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.249 0.751 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.165 -9.728 12.007 15.774 hybrid contribution 1.364 -0.112 -1.481 2.016 sum 4.529 -9.840 10.526 15.104 Atomic orbital electron populations 1.22212 0.97458 1.01134 1.02072 1.21179 0.93069 0.83013 1.02767 1.57620 1.78347 1.22834 1.23887 1.19162 0.97239 0.92080 0.79288 1.21724 1.05046 1.24308 1.06269 0.91012 1.24962 0.96897 0.94688 0.97480 1.69965 1.39185 1.23837 1.19957 0.86611 0.83191 0.78824 0.79769 1.19563 1.21121 1.21108 1.01732 0.72770 0.73062 0.73016 1.93470 1.74921 1.73177 1.56148 1.93590 1.84246 1.32436 1.86669 1.55818 1.27876 1.26829 1.75033 1.19629 0.96581 0.82620 0.90049 1.19939 0.98429 0.95406 0.96230 1.20923 0.98243 0.96965 0.93014 1.21108 0.99137 0.93941 0.99268 1.21097 0.96884 0.98733 0.96593 1.21025 1.00213 0.98093 0.95331 1.21072 0.97761 0.93423 1.00194 1.23161 0.94737 1.02167 0.96441 1.22819 0.97357 1.00461 0.97164 1.23677 1.00555 1.01477 0.93843 0.92545 0.92913 0.92324 0.90736 0.90687 0.94929 0.93346 0.92804 0.75057 0.86124 0.86455 0.86610 0.86403 0.85568 0.89055 0.90682 0.90081 0.91346 0.87884 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 10.24 37.16 0.38 -2.43 16 2 C 0.13 2.29 5.70 -4.04 -0.02 2.27 16 3 N -0.99 -20.42 2.83 -115.67 -0.33 -20.74 16 4 C 0.24 6.06 5.47 -5.20 -0.03 6.03 16 5 C -0.53 -13.58 9.35 -34.44 -0.32 -13.91 16 6 H 0.07 1.72 6.17 -52.48 -0.32 1.40 16 7 C 0.06 1.66 5.45 -17.82 -0.10 1.56 16 8 N -0.89 -25.42 13.30 55.43 0.74 -24.68 16 9 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 S 2.79 55.42 6.16 -107.50 -0.66 54.76 16 14 O -0.99 -19.25 13.53 -57.17 -0.77 -20.02 16 15 O -0.99 -23.33 16.79 -57.17 -0.96 -24.29 16 16 N -1.10 -18.14 5.62 0.26 0.00 -18.13 16 17 C 0.20 2.83 0.90 -132.16 -0.12 2.71 16 18 C -0.10 -1.43 4.31 -104.62 -0.45 -1.88 16 19 C -0.07 -1.13 8.10 -39.58 -0.32 -1.45 16 20 C -0.12 -1.71 10.05 -39.58 -0.40 -2.11 16 21 C -0.11 -1.49 10.05 -39.58 -0.40 -1.88 16 22 C -0.13 -1.60 9.88 -39.59 -0.39 -1.99 16 23 C -0.11 -1.43 6.40 -39.58 -0.25 -1.68 16 24 C -0.13 -1.44 7.27 -25.92 -0.19 -1.62 16 25 C -0.14 -1.55 7.99 -25.92 -0.21 -1.76 16 26 C -0.16 -2.03 5.95 -25.92 -0.15 -2.18 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 30 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 31 H 0.08 1.26 3.86 -51.93 -0.20 1.06 16 32 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.05 1.34 6.95 -51.92 -0.36 0.98 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.42 6.50 8.84 -34.47 -0.30 6.19 16 36 H 0.12 1.93 8.01 -52.49 -0.42 1.51 16 37 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.13 1.60 6.40 -52.49 -0.34 1.27 16 41 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 42 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.10 1.55 5.62 -51.93 -0.29 1.25 16 46 H 0.09 1.03 6.78 -51.93 -0.35 0.68 16 LS Contribution 374.40 15.07 5.64 5.64 Total: -1.00 -30.83 374.40 -11.12 -41.95 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.79 Total: 10.52 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -2.97 Total: -20.32 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: 0.41 Total: -63.56 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -1.73 Total: -44.31 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 55.42 SS G_CDS: -0.66 Total: 54.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.83 -11.12 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336904893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.905 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds