Wall clock time and date at job start Tue Mar 31 2020 21:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47039 * 2 1 4 4 C 1.46494 * 119.99925 * 275.00017 * 3 2 1 5 5 C 1.50699 * 109.47384 * 278.11545 * 4 3 2 6 6 H 1.08005 * 119.99284 * 1.37792 * 5 4 3 7 7 C 1.37870 * 120.00184 * 181.37359 * 5 4 3 8 8 N 1.31515 * 120.00230 * 5.86767 * 7 5 4 9 9 Si 1.86802 * 120.00141 * 185.85981 * 7 5 4 10 10 H 1.48505 * 109.47010 * 5.23890 * 9 7 5 11 11 H 1.48508 * 109.46911 * 125.23229 * 9 7 5 12 12 H 1.48493 * 109.47752 * 245.23541 * 9 7 5 13 13 S 1.65597 * 119.99681 * 94.99758 * 3 2 1 14 14 O 1.42098 * 106.40766 * 341.68750 * 13 3 2 15 15 O 1.42102 * 106.40357 * 208.76638 * 13 3 2 16 16 N 1.65599 * 107.21619 * 95.23082 * 13 3 2 17 17 C 1.46508 * 119.99976 * 273.85377 * 16 13 3 18 18 C 1.50704 * 112.84668 * 70.54644 * 17 16 13 19 19 C 1.38236 * 119.99911 * 65.81553 * 18 17 16 20 20 C 1.38235 * 119.99527 * 179.97438 * 19 18 17 21 21 C 1.38242 * 120.00013 * 359.97438 * 20 19 18 22 22 C 1.38237 * 120.00168 * 0.02562 * 21 20 19 23 23 C 1.38229 * 119.99934 * 359.97438 * 22 21 20 24 24 C 1.53777 * 113.69027 * 201.81188 * 17 16 13 25 25 C 1.53782 * 87.07944 * 89.12740 * 24 17 16 26 26 C 1.53779 * 113.61341 * 299.35173 * 17 16 13 27 27 H 1.09005 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47694 * 299.99886 * 1 2 3 29 29 H 1.08997 * 109.47120 * 60.00065 * 1 2 3 30 30 H 1.08995 * 109.47224 * 239.99938 * 2 1 3 31 31 H 1.08997 * 109.47120 * 119.99935 * 2 1 3 32 32 H 1.08997 * 109.47214 * 38.11772 * 4 3 2 33 33 H 1.09008 * 109.46793 * 158.11271 * 4 3 2 34 34 H 0.97005 * 120.00293 * 179.97438 * 8 7 5 35 35 H 0.97000 * 120.00359 * 93.85933 * 16 13 3 36 36 H 1.07994 * 120.00173 * 359.97438 * 19 18 17 37 37 H 1.07995 * 119.99721 * 179.69556 * 20 19 18 38 38 H 1.08003 * 119.99457 * 179.97438 * 21 20 19 39 39 H 1.07995 * 119.99424 * 180.02562 * 22 21 20 40 40 H 1.07996 * 120.00428 * 180.02562 * 23 22 21 41 41 H 1.09006 * 113.61415 * 203.67496 * 24 17 16 42 42 H 1.08996 * 113.62015 * 334.57931 * 24 17 16 43 43 H 1.08993 * 113.62022 * 270.88142 * 25 24 17 44 44 H 1.09007 * 113.61270 * 139.97836 * 25 24 17 45 45 H 1.08997 * 113.61873 * 25.34356 * 26 17 16 46 46 H 1.09003 * 113.61382 * 156.16678 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4611 1.7302 -1.9198 6 1 4.1087 1.0023 -1.4538 7 6 3.8263 2.3132 -3.1146 8 7 3.0966 3.2816 -3.6240 9 14 5.3575 1.7277 -4.0101 10 1 5.9268 0.5533 -3.3014 11 1 5.0016 1.3425 -5.3995 12 1 6.3615 2.8214 -4.0414 13 16 2.4121 2.1202 1.4287 14 8 1.7848 1.3660 2.4568 15 8 2.1872 3.5101 1.2369 16 7 4.0438 1.9357 1.6425 17 6 4.5667 0.7253 2.2813 18 6 4.4324 -0.4992 1.4131 19 6 5.1463 -0.5914 0.2330 20 6 5.0235 -1.7148 -0.5631 21 6 4.1871 -2.7463 -0.1787 22 6 3.4732 -2.6540 1.0015 23 6 3.5960 -1.5306 1.7975 24 6 5.9702 0.9019 2.8843 25 6 5.2716 1.3479 4.1797 26 6 4.0606 0.5197 3.7188 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3305 1.8513 -1.9247 33 1 2.1475 3.1811 -1.0689 34 1 3.3537 3.6920 -4.4645 35 1 4.6534 2.6290 1.3449 36 1 5.7999 0.2142 -0.0671 37 1 5.5774 -1.7847 -1.4875 38 1 4.0909 -3.6238 -0.8009 39 1 2.8202 -3.4600 1.3018 40 1 3.0387 -1.4587 2.7197 41 1 6.5227 -0.0322 2.9855 42 1 6.5536 1.6905 2.4091 43 1 5.0765 2.4193 4.2241 44 1 5.7437 0.9648 5.0845 45 1 3.1024 0.9998 3.9173 46 1 4.0897 -0.5191 4.0476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336904893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:55 Heat of formation + Delta-G solvation = -45.168588 kcal Electronic energy + Delta-G solvation = -30175.754274 eV Core-core repulsion = 26385.064613 eV Total energy + Delta-G solvation = -3790.689661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.27668 -38.91200 -38.21088 -37.54636 -36.85403 -34.65487 -33.61314 -31.86729 -31.66991 -31.38425 -28.45033 -26.75516 -25.79836 -24.89097 -23.26155 -23.09338 -22.40052 -20.72765 -19.93176 -18.63588 -18.59974 -18.15570 -17.97527 -17.20907 -16.77843 -16.30799 -16.09741 -15.60511 -15.57125 -15.33165 -14.82029 -14.69426 -14.59523 -14.19035 -13.93343 -13.61586 -13.49374 -13.48889 -13.32174 -13.24456 -13.03638 -12.94821 -12.78704 -12.67674 -12.63091 -12.35419 -12.21775 -12.04863 -11.97149 -11.88775 -11.63537 -11.59502 -11.52397 -11.00609 -10.56394 -10.30705 -9.78290 -9.53211 -9.48706 -8.13396 -6.24590 -0.22732 0.53304 0.65495 1.40371 1.42672 1.53523 2.05333 2.43902 2.60313 3.01021 3.18492 3.38979 3.56698 3.75575 3.79143 3.94681 4.04988 4.14494 4.28931 4.33461 4.41131 4.47235 4.51641 4.71400 4.72877 4.80465 4.87334 4.90397 4.93024 5.00993 5.11149 5.15264 5.20317 5.24268 5.28010 5.29205 5.31982 5.41137 5.52928 5.59775 5.71941 5.77628 5.80818 5.85248 5.93715 6.17937 6.21916 6.24810 6.90785 7.44802 8.95392 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010206 B = 0.006575 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.727091 B = 4257.525879 C = 4801.116061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.990 5.990 4 C 0.261 3.739 5 C -0.530 4.530 6 H 0.087 0.913 7 C 0.008 3.992 8 N -0.934 5.934 9 Si 0.952 3.048 10 H -0.250 1.250 11 H -0.287 1.287 12 H -0.286 1.286 13 S 2.795 3.205 14 O -0.987 6.987 15 O -1.029 7.029 16 N -1.093 6.093 17 C 0.183 3.817 18 C -0.105 4.105 19 C -0.093 4.093 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.116 4.116 25 C -0.134 4.134 26 C -0.158 4.158 27 H 0.090 0.910 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.012 0.988 33 H 0.012 0.988 34 H 0.262 0.738 35 H 0.418 0.582 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 -13.008 12.745 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.002 4.002 3 N -0.830 5.830 4 C 0.137 3.863 5 C -0.569 4.569 6 H 0.105 0.895 7 C -0.190 4.190 8 N -0.574 5.574 9 Si 0.777 3.223 10 H -0.174 1.174 11 H -0.213 1.213 12 H -0.212 1.212 13 S 2.804 3.196 14 O -0.971 6.971 15 O -1.013 7.013 16 N -0.851 5.851 17 C 0.094 3.906 18 C -0.107 4.107 19 C -0.111 4.111 20 C -0.151 4.151 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.155 4.155 25 C -0.172 4.172 26 C -0.196 4.196 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.253 0.747 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.126 0.874 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.369 -12.559 13.254 18.774 hybrid contribution 0.958 0.696 -1.783 2.141 sum 5.328 -11.863 11.470 17.340 Atomic orbital electron populations 1.22217 0.96281 1.03106 1.01189 1.21361 0.94115 0.81550 1.03210 1.57544 1.79207 1.23696 1.22541 1.18689 0.96582 0.90495 0.80566 1.22032 1.05075 1.23790 1.06011 0.89514 1.25805 0.99991 0.94749 0.98501 1.70111 1.41355 1.25445 1.20512 0.85596 0.79454 0.78883 0.78338 1.17350 1.21315 1.21224 1.01281 0.73549 0.71989 0.72732 1.93476 1.75512 1.72689 1.55453 1.93531 1.85409 1.35220 1.87170 1.55551 1.26501 1.28068 1.75006 1.20024 0.98687 0.81415 0.90425 1.19992 0.98722 0.95847 0.96105 1.20919 0.99037 0.97199 0.93959 1.21263 0.99938 0.94446 0.99405 1.21381 0.96014 0.98902 0.97013 1.21366 0.99783 0.98295 0.94607 1.21274 0.97572 0.93586 1.00814 1.23168 0.93328 1.03097 0.95931 1.22810 0.96311 0.99938 0.98093 1.23713 1.00088 1.02819 0.93017 0.89153 0.93326 0.93688 0.91453 0.88908 0.96969 0.96953 0.92911 0.74726 0.87450 0.86524 0.84322 0.83537 0.84682 0.87384 0.90412 0.90747 0.88865 0.90129 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.42 10.24 71.98 0.74 -4.68 16 2 C 0.12 4.36 5.70 86.38 0.49 4.85 16 3 N -0.99 -41.50 2.83 -519.86 -1.47 -42.98 16 4 C 0.26 13.38 5.47 85.63 0.47 13.84 16 5 C -0.53 -27.28 9.35 25.60 0.24 -27.04 16 6 H 0.09 4.13 6.17 -2.91 -0.02 4.11 16 7 C 0.01 0.44 5.45 84.65 0.46 0.90 16 8 N -0.93 -54.80 13.30 21.44 0.29 -54.51 16 9 Si 0.95 41.79 29.54 68.60 2.03 43.82 16 10 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 12 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 13 S 2.80 112.54 6.16 -56.49 -0.35 112.19 16 14 O -0.99 -37.74 13.53 -128.00 -1.73 -39.47 16 15 O -1.03 -50.59 16.79 -128.00 -2.15 -52.74 16 16 N -1.09 -35.82 5.62 -153.08 -0.86 -36.68 16 17 C 0.18 4.87 0.90 3.38 0.00 4.87 16 18 C -0.10 -2.85 4.31 -19.86 -0.09 -2.93 16 19 C -0.09 -2.73 8.10 22.27 0.18 -2.55 16 20 C -0.13 -3.64 10.05 22.27 0.22 -3.41 16 21 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 22 C -0.12 -2.61 9.88 22.27 0.22 -2.39 16 23 C -0.11 -2.75 6.40 22.27 0.14 -2.61 16 24 C -0.12 -2.38 7.27 31.12 0.23 -2.16 16 25 C -0.13 -2.64 7.99 31.12 0.25 -2.39 16 26 C -0.16 -3.74 5.95 31.12 0.19 -3.56 16 27 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.54 8.12 -2.39 -0.02 1.53 16 30 H 0.07 2.48 8.11 -2.39 -0.02 2.46 16 31 H 0.09 2.94 3.86 -2.39 -0.01 2.93 16 32 H 0.01 0.67 8.10 -2.39 -0.02 0.65 16 33 H 0.01 0.73 6.95 -2.38 -0.02 0.71 16 34 H 0.26 14.59 8.31 -92.70 -0.77 13.82 16 35 H 0.42 13.22 8.84 -96.74 -0.85 12.37 16 36 H 0.11 3.36 8.01 -2.91 -0.02 3.34 16 37 H 0.12 3.13 8.06 -2.91 -0.02 3.10 16 38 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.14 2.99 6.40 -2.91 -0.02 2.97 16 41 H 0.11 1.88 8.09 -2.38 -0.02 1.87 16 42 H 0.08 1.56 8.11 -2.39 -0.02 1.54 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.08 2.31 5.62 -2.39 -0.01 2.29 16 46 H 0.11 2.17 6.78 -2.39 -0.02 2.15 16 Total: -1.00 -67.72 374.40 -0.15 -67.87 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: 0.14 Total: 34.14 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 3.97 Total: -31.65 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -2.05 Total: -134.17 kcal Atomic # 8 Polarization: -88.33 SS G_CDS: -3.88 Total: -92.21 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 112.54 SS G_CDS: -0.35 Total: 112.19 kcal Total: -67.72 -0.15 -67.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336904893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.700 kcal (2) G-P(sol) polarization free energy of solvation -67.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds