Wall clock time and date at job start Tue Mar 31 2020 21:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46981 * 2 1 4 4 C 1.46497 * 119.99995 * 85.00301 * 3 2 1 5 5 C 1.50694 * 109.47115 * 84.99927 * 4 3 2 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 4 10 10 H 1.48504 * 109.47032 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46816 * 120.00323 * 9 7 5 12 12 H 1.48495 * 109.46630 * 240.00111 * 9 7 5 13 13 S 1.65605 * 120.00041 * 265.00294 * 3 2 1 14 14 O 1.42101 * 106.40279 * 23.53914 * 13 3 2 15 15 O 1.42096 * 106.40152 * 156.46091 * 13 3 2 16 16 N 1.65607 * 107.21622 * 269.99959 * 13 3 2 17 17 C 1.47019 * 125.64767 * 90.02729 * 16 13 3 18 18 C 1.54318 * 107.27097 * 181.02128 * 17 16 13 19 19 C 1.55154 * 102.94410 * 22.19123 * 18 17 16 20 20 H 1.08999 * 111.00424 * 82.61088 * 19 18 17 21 21 C 1.50701 * 111.00801 * 206.42751 * 19 18 17 22 22 C 1.38233 * 119.99883 * 58.26867 * 21 19 18 23 23 C 1.38237 * 119.99502 * 179.76790 * 22 21 19 24 24 C 1.38232 * 120.00456 * 0.49071 * 23 22 21 25 25 C 1.38245 * 119.99860 * 359.78509 * 24 23 22 26 26 C 1.38237 * 119.99755 * 359.95744 * 25 24 23 27 27 C 1.47415 * 125.64565 * 269.71495 * 16 13 3 28 28 H 1.08995 * 109.47248 * 299.99807 * 1 2 3 29 29 H 1.09001 * 109.47549 * 59.99889 * 1 2 3 30 30 H 1.09006 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46957 * 240.00235 * 2 1 3 32 32 H 1.08995 * 109.47524 * 120.00556 * 2 1 3 33 33 H 1.08998 * 109.46734 * 325.00044 * 4 3 2 34 34 H 1.09002 * 109.47081 * 204.99815 * 4 3 2 35 35 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.88538 * 300.43777 * 17 16 13 37 37 H 1.09003 * 109.88605 * 61.44906 * 17 16 13 38 38 H 1.09002 * 110.72240 * 140.55184 * 18 17 16 39 39 H 1.08999 * 110.72098 * 263.82915 * 18 17 16 40 40 H 1.07996 * 120.00103 * 359.97438 * 22 21 19 41 41 H 1.08004 * 119.99684 * 180.25140 * 23 22 21 42 42 H 1.08000 * 120.00710 * 179.76966 * 24 23 22 43 43 H 1.07995 * 120.00195 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.99679 * 179.97438 * 26 25 24 45 45 H 1.09006 * 110.37104 * 274.74599 * 27 16 13 46 46 H 1.08999 * 110.37416 * 37.07266 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4947 1.7888 1.8822 6 1 4.1724 1.1118 1.3835 7 6 3.8529 2.3614 3.0843 8 7 3.0280 3.1863 3.6915 9 14 5.5065 1.9590 3.8546 10 1 6.2404 1.0073 2.9822 11 1 6.2995 3.2055 4.0038 12 1 5.2941 1.3446 5.1897 13 16 2.4120 2.1203 -1.4287 14 8 1.6867 1.4416 -2.4448 15 8 2.3055 3.5186 -1.1998 16 7 4.0143 1.8138 -1.7138 17 6 4.5475 0.6627 -2.4569 18 6 6.0860 0.7820 -2.4442 19 6 6.3543 1.6873 -1.2130 20 1 6.3517 1.1048 -0.2917 21 6 7.6501 2.4408 -1.3686 22 6 7.8372 3.2774 -2.4531 23 6 9.0240 3.9723 -2.5932 24 6 10.0275 3.8228 -1.6543 25 6 9.8425 2.9818 -0.5728 26 6 8.6537 2.2910 -0.4299 27 6 5.1418 2.6534 -1.2701 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3617 1.8096 1.9452 34 1 2.0921 3.1803 1.0756 35 1 3.2802 3.5894 4.5369 36 1 4.2436 -0.2649 -1.9716 37 1 4.1804 0.6815 -3.4830 38 1 6.5477 -0.1965 -2.3112 39 1 6.4436 1.2573 -3.3576 40 1 7.0550 3.3907 -3.1890 41 1 9.1686 4.6290 -3.4383 42 1 10.9561 4.3628 -1.7657 43 1 10.6267 2.8646 0.1605 44 1 8.5094 1.6337 0.4148 45 1 5.3247 3.4533 -1.9877 46 1 4.9407 3.0677 -0.2821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336905025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:33 Heat of formation + Delta-G solvation = -54.674719 kcal Electronic energy + Delta-G solvation = -28667.043211 eV Core-core repulsion = 24875.941334 eV Total energy + Delta-G solvation = -3791.101877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.70532 -37.66035 -36.66209 -36.00850 -35.20144 -32.72535 -32.49588 -30.88842 -29.95341 -29.58623 -27.95843 -26.60718 -23.30680 -23.08585 -22.46432 -21.99301 -21.54611 -20.03441 -18.43958 -17.31178 -17.06769 -16.74169 -16.30357 -15.83358 -15.41559 -14.98209 -14.62574 -14.53415 -13.99005 -13.56141 -13.44316 -13.39151 -13.15883 -13.09167 -12.89406 -12.78961 -12.58570 -12.08765 -11.97805 -11.76178 -11.68676 -11.53059 -11.34592 -11.20541 -11.16425 -11.10277 -11.05537 -10.96086 -10.73948 -10.52488 -10.46986 -10.37773 -10.06677 -9.76512 -8.90656 -8.68192 -8.59006 -8.50098 -8.04666 -6.12537 -4.18772 1.22630 1.37576 1.42717 3.21708 3.29133 3.31136 3.50288 3.77430 4.13457 4.34130 4.54981 4.76722 4.79442 4.98773 5.00449 5.12697 5.15343 5.22465 5.24280 5.42118 5.46504 5.51812 5.56966 5.68852 5.76449 5.78277 5.82109 5.86208 6.03205 6.04415 6.07306 6.10253 6.19968 6.30517 6.33162 6.46626 6.51641 6.53901 6.63463 6.66435 6.73309 6.80099 7.02522 7.35599 7.45011 7.66037 7.85097 8.14896 8.86560 9.47011 10.95584 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.005368 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.911364 B = 5214.816500 C = 7152.087222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.244 3.756 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.797 3.203 14 O -0.996 6.996 15 O -0.974 6.974 16 N -1.016 6.016 17 C 0.124 3.876 18 C -0.118 4.118 19 C -0.063 4.063 20 H 0.098 0.902 21 C -0.063 4.063 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.120 4.120 26 C -0.112 4.112 27 C 0.134 3.866 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.050 0.950 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.063 0.937 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -4.646 -10.873 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.122 3.878 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.807 3.193 14 O -0.980 6.980 15 O -0.959 6.959 16 N -0.854 5.854 17 C -0.002 4.002 18 C -0.156 4.156 19 C -0.083 4.083 20 H 0.116 0.884 21 C -0.064 4.064 22 C -0.133 4.133 23 C -0.138 4.138 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.130 4.130 27 C 0.008 3.992 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.693 -4.001 -11.244 14.765 hybrid contribution 1.207 -0.391 0.996 1.613 sum 9.901 -4.392 -10.248 14.911 Atomic orbital electron populations 1.22206 0.96929 1.01377 1.02390 1.20967 0.93651 0.82967 1.01988 1.57806 1.78172 1.22927 1.24299 1.19199 0.97360 0.92204 0.79018 1.21580 1.02167 1.27872 1.05970 0.91846 1.24950 0.97109 0.94867 0.96906 1.69943 1.35828 1.29866 1.17069 0.86582 0.84090 0.78315 0.79315 1.19586 1.20809 1.21025 1.01410 0.71715 0.73340 0.72797 1.93530 1.70083 1.76568 1.57805 1.93576 1.85528 1.30766 1.85999 1.59126 1.23774 1.34310 1.68185 1.21605 0.93906 0.88696 0.95985 1.22714 0.94711 1.00246 0.97953 1.21444 0.91042 0.96125 0.99695 0.88381 1.19698 0.94928 0.97062 0.94706 1.21042 0.97471 0.96827 0.97940 1.21102 0.93813 0.99651 0.99247 1.21106 0.99104 0.99260 0.95140 1.21127 0.97484 0.97172 0.97984 1.21142 0.93288 0.99834 0.98774 1.22060 0.83873 0.92007 1.01233 0.92059 0.92677 0.92348 0.92075 0.90264 0.94397 0.93244 0.92662 0.91975 0.91600 0.90292 0.90628 0.85916 0.86282 0.86447 0.86268 0.85957 0.91919 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.28 6.06 -4.04 -0.02 2.25 16 3 N -0.99 -20.48 2.82 -115.67 -0.33 -20.81 16 4 C 0.24 6.01 5.43 -5.20 -0.03 5.98 16 5 C -0.54 -13.68 9.38 -34.44 -0.32 -14.00 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 9 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 S 2.80 56.98 6.31 -107.50 -0.68 56.30 16 14 O -1.00 -20.57 16.69 -57.17 -0.95 -21.53 16 15 O -0.97 -23.13 16.27 -57.17 -0.93 -24.06 16 16 N -1.02 -17.41 3.75 -111.29 -0.42 -17.83 16 17 C 0.12 1.68 6.99 -3.07 -0.02 1.66 16 18 C -0.12 -1.35 6.36 -24.90 -0.16 -1.51 16 19 C -0.06 -0.88 3.28 -89.50 -0.29 -1.17 16 20 H 0.10 1.47 7.96 -51.93 -0.41 1.06 16 21 C -0.06 -0.83 5.00 -104.62 -0.52 -1.36 16 22 C -0.11 -1.38 8.29 -39.58 -0.33 -1.71 16 23 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 24 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 26 C -0.11 -1.45 9.69 -39.58 -0.38 -1.84 16 27 C 0.13 2.23 6.39 -2.41 -0.02 2.21 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.95 7.61 -51.93 -0.40 0.56 16 32 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 33 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.05 1.35 6.91 -51.93 -0.36 0.99 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.78 7.08 -51.93 -0.37 0.41 16 40 H 0.12 1.34 7.00 -52.49 -0.37 0.97 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.12 1.54 7.99 -52.49 -0.42 1.12 16 45 H 0.06 0.96 6.75 -51.93 -0.35 0.61 16 46 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -31.35 387.50 -12.05 -43.40 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.29 Total: 3.29 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -3.01 Total: -15.43 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.01 Total: -63.06 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -1.88 Total: -45.59 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 56.98 SS G_CDS: -0.68 Total: 56.30 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.35 -12.05 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336905025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.275 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds