Wall clock time and date at job start Tue Mar 31 2020 21:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46981 * 2 1 4 4 C 1.46497 * 119.99995 * 85.00301 * 3 2 1 5 5 C 1.50694 * 109.47115 * 84.99927 * 4 3 2 6 6 H 1.08000 * 120.00563 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 4 10 10 H 1.48504 * 109.47032 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46816 * 120.00323 * 9 7 5 12 12 H 1.48495 * 109.46630 * 240.00111 * 9 7 5 13 13 S 1.65605 * 120.00041 * 265.00294 * 3 2 1 14 14 O 1.42101 * 106.40279 * 23.53914 * 13 3 2 15 15 O 1.42096 * 106.40152 * 156.46091 * 13 3 2 16 16 N 1.65607 * 107.21622 * 269.99959 * 13 3 2 17 17 C 1.47019 * 125.64767 * 90.02729 * 16 13 3 18 18 C 1.54318 * 107.27097 * 181.02128 * 17 16 13 19 19 C 1.55154 * 102.94410 * 22.19123 * 18 17 16 20 20 H 1.08999 * 111.00424 * 82.61088 * 19 18 17 21 21 C 1.50701 * 111.00801 * 206.42751 * 19 18 17 22 22 C 1.38233 * 119.99883 * 58.26867 * 21 19 18 23 23 C 1.38237 * 119.99502 * 179.76790 * 22 21 19 24 24 C 1.38232 * 120.00456 * 0.49071 * 23 22 21 25 25 C 1.38245 * 119.99860 * 359.78509 * 24 23 22 26 26 C 1.38237 * 119.99755 * 359.95744 * 25 24 23 27 27 C 1.47415 * 125.64565 * 269.71495 * 16 13 3 28 28 H 1.08995 * 109.47248 * 299.99807 * 1 2 3 29 29 H 1.09001 * 109.47549 * 59.99889 * 1 2 3 30 30 H 1.09006 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46957 * 240.00235 * 2 1 3 32 32 H 1.08995 * 109.47524 * 120.00556 * 2 1 3 33 33 H 1.08998 * 109.46734 * 325.00044 * 4 3 2 34 34 H 1.09002 * 109.47081 * 204.99815 * 4 3 2 35 35 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.88538 * 300.43777 * 17 16 13 37 37 H 1.09003 * 109.88605 * 61.44906 * 17 16 13 38 38 H 1.09002 * 110.72240 * 140.55184 * 18 17 16 39 39 H 1.08999 * 110.72098 * 263.82915 * 18 17 16 40 40 H 1.07996 * 120.00103 * 359.97438 * 22 21 19 41 41 H 1.08004 * 119.99684 * 180.25140 * 23 22 21 42 42 H 1.08000 * 120.00710 * 179.76966 * 24 23 22 43 43 H 1.07995 * 120.00195 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.99679 * 179.97438 * 26 25 24 45 45 H 1.09006 * 110.37104 * 274.74599 * 27 16 13 46 46 H 1.08999 * 110.37416 * 37.07266 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4947 1.7888 1.8822 6 1 4.1724 1.1118 1.3835 7 6 3.8529 2.3614 3.0843 8 7 3.0280 3.1863 3.6915 9 14 5.5065 1.9590 3.8546 10 1 6.2404 1.0073 2.9822 11 1 6.2995 3.2055 4.0038 12 1 5.2941 1.3446 5.1897 13 16 2.4120 2.1203 -1.4287 14 8 1.6867 1.4416 -2.4448 15 8 2.3055 3.5186 -1.1998 16 7 4.0143 1.8138 -1.7138 17 6 4.5475 0.6627 -2.4569 18 6 6.0860 0.7820 -2.4442 19 6 6.3543 1.6873 -1.2130 20 1 6.3517 1.1048 -0.2917 21 6 7.6501 2.4408 -1.3686 22 6 7.8372 3.2774 -2.4531 23 6 9.0240 3.9723 -2.5932 24 6 10.0275 3.8228 -1.6543 25 6 9.8425 2.9818 -0.5728 26 6 8.6537 2.2910 -0.4299 27 6 5.1418 2.6534 -1.2701 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3617 1.8096 1.9452 34 1 2.0921 3.1803 1.0756 35 1 3.2802 3.5894 4.5369 36 1 4.2436 -0.2649 -1.9716 37 1 4.1804 0.6815 -3.4830 38 1 6.5477 -0.1965 -2.3112 39 1 6.4436 1.2573 -3.3576 40 1 7.0550 3.3907 -3.1890 41 1 9.1686 4.6290 -3.4383 42 1 10.9561 4.3628 -1.7657 43 1 10.6267 2.8646 0.1605 44 1 8.5094 1.6337 0.4148 45 1 5.3247 3.4533 -1.9877 46 1 4.9407 3.0677 -0.2821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336905025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:33 Heat of formation + Delta-G solvation = -73.312567 kcal Electronic energy + Delta-G solvation = -28667.851409 eV Core-core repulsion = 24875.941334 eV Total energy + Delta-G solvation = -3791.910075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.68410 -38.73253 -38.36822 -37.68440 -36.93029 -34.69736 -33.55897 -31.75093 -31.55547 -30.68053 -29.07119 -28.48222 -24.96943 -24.30722 -23.47183 -23.27007 -22.85473 -21.04905 -19.95403 -18.76968 -18.75396 -18.20352 -17.83176 -17.28901 -16.69222 -16.40208 -15.92531 -15.60572 -15.49084 -14.93352 -14.76156 -14.57803 -14.48507 -14.32530 -14.13969 -13.87053 -13.77280 -13.65218 -13.60682 -13.37042 -13.25715 -13.08529 -12.90277 -12.77714 -12.68296 -12.47153 -12.29189 -12.20284 -12.11405 -12.03851 -11.74231 -11.70234 -11.61311 -11.44983 -10.59781 -10.02879 -9.78655 -9.72886 -9.52872 -8.17264 -6.30309 -0.37413 0.47823 0.54949 1.40034 1.41693 1.52482 1.95735 2.41265 2.54531 2.87797 3.14742 3.24526 3.57620 3.78651 3.90457 3.96272 4.09985 4.20187 4.28893 4.34241 4.37709 4.41439 4.44060 4.50030 4.60815 4.67131 4.70378 4.77837 4.89888 4.92303 4.96456 5.07925 5.09398 5.13968 5.16121 5.21981 5.25761 5.32738 5.37809 5.43838 5.56802 5.63420 5.66995 5.76054 5.79051 5.97543 6.10569 6.16963 6.82053 7.39595 8.91357 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009920 B = 0.005368 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.911364 B = 5214.816500 C = 7152.087222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.261 3.739 5 C -0.533 4.533 6 H 0.073 0.927 7 C 0.011 3.989 8 N -0.930 5.930 9 Si 0.952 3.048 10 H -0.251 1.251 11 H -0.285 1.285 12 H -0.282 1.282 13 S 2.808 3.192 14 O -0.998 6.998 15 O -1.016 7.016 16 N -1.016 6.016 17 C 0.113 3.887 18 C -0.104 4.104 19 C -0.056 4.056 20 H 0.084 0.916 21 C -0.078 4.078 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.127 4.127 26 C -0.132 4.132 27 C 0.130 3.870 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.021 0.979 34 H 0.013 0.987 35 H 0.264 0.736 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.119 0.881 45 H 0.073 0.927 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.855 -6.273 -12.346 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.137 3.863 5 C -0.572 4.572 6 H 0.091 0.909 7 C -0.188 4.188 8 N -0.570 5.570 9 Si 0.777 3.223 10 H -0.175 1.175 11 H -0.211 1.211 12 H -0.208 1.208 13 S 2.819 3.181 14 O -0.982 6.982 15 O -1.001 7.001 16 N -0.856 5.856 17 C -0.012 4.012 18 C -0.143 4.143 19 C -0.076 4.076 20 H 0.102 0.898 21 C -0.079 4.079 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.145 4.145 26 C -0.150 4.150 27 C 0.005 3.995 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.148 0.852 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.155 0.845 44 H 0.137 0.863 45 H 0.091 0.909 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.109 -5.666 -12.742 17.829 hybrid contribution 0.455 0.132 1.384 1.463 sum 11.564 -5.533 -11.358 17.127 Atomic orbital electron populations 1.22196 0.95874 1.03329 1.01275 1.21260 0.94671 0.81225 1.03220 1.57729 1.78999 1.24140 1.22798 1.18714 0.96724 0.90578 0.80248 1.21818 1.02339 1.27296 1.05749 0.90911 1.25791 1.00630 0.94743 0.97612 1.70078 1.37959 1.31339 1.17632 0.85586 0.79879 0.78282 0.78555 1.17463 1.21065 1.20821 1.00845 0.72401 0.72340 0.72542 1.93514 1.70827 1.76305 1.57554 1.93518 1.86520 1.33534 1.86481 1.58857 1.22693 1.35710 1.68385 1.21967 0.95383 0.87566 0.96283 1.22714 0.93070 1.01062 0.97407 1.21315 0.90243 0.95703 1.00335 0.89771 1.19680 0.94575 0.98012 0.95615 1.21206 0.98318 0.96844 0.97829 1.21436 0.93283 0.99398 0.99959 1.21466 1.00046 0.98732 0.94474 1.21403 0.97398 0.96912 0.98738 1.21271 0.94157 1.00676 0.98913 1.22103 0.84935 0.93098 0.99386 0.93439 0.93512 0.88863 0.89653 0.90092 0.96133 0.96915 0.92687 0.90918 0.90241 0.87951 0.88970 0.85151 0.83959 0.83912 0.84520 0.86299 0.90931 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.21 10.24 71.98 0.74 -4.47 16 2 C 0.12 4.13 6.06 86.38 0.52 4.65 16 3 N -1.00 -41.89 2.82 -519.87 -1.47 -43.36 16 4 C 0.26 13.40 5.43 85.63 0.47 13.86 16 5 C -0.53 -27.72 9.38 25.60 0.24 -27.48 16 6 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 7 C 0.01 0.62 5.46 84.66 0.46 1.08 16 8 N -0.93 -54.37 13.29 21.45 0.28 -54.08 16 9 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 10 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 13 S 2.81 115.86 6.31 -56.49 -0.36 115.50 16 14 O -1.00 -40.57 16.69 -128.00 -2.14 -42.70 16 15 O -1.02 -50.36 16.27 -128.00 -2.08 -52.44 16 16 N -1.02 -34.35 3.75 -506.02 -1.90 -36.25 16 17 C 0.11 2.80 6.99 86.73 0.61 3.40 16 18 C -0.10 -2.11 6.36 31.78 0.20 -1.91 16 19 C -0.06 -1.49 3.28 -10.07 -0.03 -1.53 16 20 H 0.08 2.46 7.96 -2.39 -0.02 2.44 16 21 C -0.08 -1.96 5.00 -19.86 -0.10 -2.05 16 22 C -0.12 -2.73 8.29 22.27 0.18 -2.55 16 23 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 24 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 25 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 26 C -0.13 -3.25 9.69 22.27 0.22 -3.03 16 27 C 0.13 4.36 6.39 86.94 0.56 4.92 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.09 2.48 7.61 -2.39 -0.02 2.46 16 32 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 33 H 0.02 1.11 8.11 -2.39 -0.02 1.09 16 34 H 0.01 0.75 6.91 -2.39 -0.02 0.73 16 35 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.60 7.08 -2.39 -0.02 1.58 16 40 H 0.13 2.58 7.00 -2.91 -0.02 2.56 16 41 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.12 2.89 7.99 -2.91 -0.02 2.86 16 45 H 0.07 2.24 6.75 -2.38 -0.02 2.23 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -69.52 387.50 0.05 -69.47 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.95 Total: 21.83 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: 4.73 Total: -21.82 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -3.08 Total: -133.69 kcal Atomic # 8 Polarization: -90.93 SS G_CDS: -4.22 Total: -95.15 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 16 Polarization: 115.86 SS G_CDS: -0.36 Total: 115.50 kcal Total: -69.52 0.05 -69.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336905025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.845 kcal (2) G-P(sol) polarization free energy of solvation -69.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds