Wall clock time and date at job start Tue Mar 31 2020 21:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.46958 * 2 1 4 4 C 1.46495 * 120.00008 * 294.95629 * 3 2 1 5 5 C 1.50705 * 109.46751 * 274.99530 * 4 3 2 6 6 H 1.07996 * 120.00133 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99730 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99867 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46931 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47041 * 120.00028 * 9 7 5 12 12 H 1.48497 * 109.47281 * 240.00321 * 9 7 5 13 13 S 1.65604 * 119.99756 * 114.95039 * 3 2 1 14 14 O 1.42103 * 106.40101 * 149.27703 * 13 3 2 15 15 O 1.42100 * 106.40383 * 16.35937 * 13 3 2 16 16 N 1.65599 * 107.21814 * 262.81822 * 13 3 2 17 17 C 1.46496 * 120.00029 * 63.88628 * 16 13 3 18 18 H 1.09000 * 109.25164 * 352.47367 * 17 16 13 19 19 C 1.52729 * 109.25569 * 232.99894 * 17 16 13 20 20 C 1.53325 * 108.39086 * 188.65295 * 19 17 16 21 21 C 1.52732 * 108.38642 * 69.86482 * 20 19 17 22 22 C 1.50635 * 110.58642 * 308.88558 * 21 20 19 23 23 C 1.38911 * 117.75102 * 197.43246 * 22 21 20 24 24 C 1.37936 * 120.54219 * 180.59621 * 23 22 21 25 25 C 1.38263 * 119.77310 * 359.97438 * 24 23 22 26 26 C 1.37935 * 119.76991 * 359.88213 * 25 24 23 27 27 C 1.37669 * 122.56069 * 17.80529 * 22 21 20 28 28 H 1.09004 * 109.47357 * 63.58620 * 1 2 3 29 29 H 1.09004 * 109.47085 * 183.58041 * 1 2 3 30 30 H 1.09001 * 109.47532 * 303.58120 * 1 2 3 31 31 H 1.09002 * 109.47516 * 240.00731 * 2 1 3 32 32 H 1.09005 * 109.47402 * 119.99999 * 2 1 3 33 33 H 1.08998 * 109.47504 * 34.99402 * 4 3 2 34 34 H 1.09002 * 109.46997 * 154.99872 * 4 3 2 35 35 H 0.96999 * 119.99973 * 179.97438 * 8 7 5 36 36 H 0.96998 * 119.99689 * 243.88106 * 16 13 3 37 37 H 1.09001 * 109.68253 * 68.92867 * 19 17 16 38 38 H 1.09002 * 109.67865 * 308.37504 * 19 17 16 39 39 H 1.08993 * 109.68586 * 189.59346 * 20 19 17 40 40 H 1.09006 * 109.67649 * 310.14853 * 20 19 17 41 41 H 1.09003 * 109.25177 * 69.17152 * 21 20 19 42 42 H 1.09002 * 109.25869 * 188.60265 * 21 20 19 43 43 H 1.07994 * 119.72802 * 0.59646 * 23 22 21 44 44 H 1.08003 * 120.11198 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.11539 * 179.86676 * 25 24 23 46 46 H 1.07998 * 119.72369 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7577 2.2503 -1.1502 5 6 2.8180 2.0282 -2.1979 6 1 3.6072 1.3117 -2.0241 7 6 2.7811 2.7405 -3.3779 8 7 1.8209 3.6140 -3.5889 9 14 4.0957 2.4657 -4.6762 10 1 5.0559 1.4383 -4.1987 11 1 3.4591 2.0006 -5.9347 12 1 4.8170 3.7391 -4.9276 13 16 2.8646 1.9603 1.3004 14 8 3.7703 2.9293 0.7904 15 8 3.2805 0.8246 2.0464 16 7 1.7914 2.7813 2.2576 17 6 0.6825 2.0665 2.8945 18 1 0.6506 1.0441 2.5182 19 6 -0.6305 2.7692 2.5554 20 6 -1.7465 2.1429 3.3999 21 6 -1.5325 2.5471 4.8571 22 6 -0.1187 2.2537 5.2861 23 6 0.1477 2.2085 6.6487 24 6 1.4247 1.9567 7.1053 25 6 2.4486 1.7469 6.2001 26 6 2.1855 1.7885 4.8467 27 6 0.8999 2.0406 4.3848 28 1 -0.3634 0.4572 -0.9204 29 1 -0.3633 -1.0257 0.0642 30 1 -0.3634 0.5684 0.8561 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.7789 2.0158 -1.5685 34 1 1.7759 3.2921 -0.8300 35 1 1.7952 4.1154 -4.4188 36 1 1.8971 3.7354 2.3967 37 1 -0.8541 2.6385 1.4966 38 1 -0.5484 3.8315 2.7854 39 1 -2.7149 2.5064 3.0565 40 1 -1.7088 1.0571 3.3109 41 1 -1.7273 3.6140 4.9665 42 1 -2.2231 1.9896 5.4900 43 1 -0.6516 2.3719 7.3563 44 1 1.6241 1.9236 8.1662 45 1 3.4509 1.5515 6.5515 46 1 2.9857 1.6241 4.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336910665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:02 Heat of formation + Delta-G solvation = -65.123731 kcal Electronic energy + Delta-G solvation = -28782.031106 eV Core-core repulsion = 24990.476125 eV Total energy + Delta-G solvation = -3791.554981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21747 -36.81434 -36.48884 -36.04430 -35.20236 -34.43138 -32.64249 -30.80296 -30.27498 -29.89150 -28.03289 -26.72580 -23.60236 -23.24037 -22.75521 -21.96999 -21.55469 -19.65807 -18.77971 -17.45296 -17.16926 -16.55174 -16.24681 -15.86184 -15.40352 -15.36269 -15.09556 -14.36004 -14.20831 -14.00763 -13.66338 -13.50810 -13.29638 -13.15574 -12.88055 -12.74994 -12.36456 -12.09242 -11.98095 -11.77217 -11.67347 -11.56004 -11.46782 -11.34310 -11.29424 -11.09039 -11.01027 -10.82886 -10.71815 -10.58453 -10.48719 -10.35712 -9.98735 -9.73863 -9.41221 -8.76158 -8.62502 -8.44138 -8.07767 -6.06265 -4.09232 1.13433 1.36687 1.39807 3.31277 3.39037 3.42949 3.47038 3.75182 4.09853 4.45350 4.53395 4.56746 4.78682 4.83605 4.93183 5.00868 5.09064 5.14399 5.17570 5.29097 5.33271 5.43626 5.46314 5.51854 5.64964 5.72046 5.74748 5.78213 5.81167 5.93621 5.95692 6.01578 6.05734 6.16057 6.27855 6.34336 6.46618 6.53636 6.61244 6.63387 6.65391 7.00157 7.14359 7.26713 7.43054 7.62453 7.92010 8.21518 8.93364 9.55802 11.02363 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.003680 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.842869 B = 7606.217116 C = 8209.367177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.116 3.884 3 N -0.990 5.990 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.775 3.225 14 O -0.963 6.963 15 O -0.997 6.997 16 N -1.126 6.126 17 C 0.200 3.800 18 H 0.096 0.904 19 C -0.130 4.130 20 C -0.118 4.118 21 C -0.081 4.081 22 C -0.069 4.069 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.100 4.100 27 C -0.090 4.090 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.034 0.966 35 H 0.262 0.738 36 H 0.413 0.587 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 -3.394 18.307 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.011 4.011 3 N -0.832 5.832 4 C 0.137 3.863 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.783 3.217 14 O -0.947 6.947 15 O -0.980 6.980 16 N -0.883 5.883 17 C 0.093 3.907 18 H 0.114 0.886 19 C -0.169 4.169 20 C -0.157 4.157 21 C -0.118 4.118 22 C -0.069 4.069 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.118 4.118 27 C -0.092 4.092 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.247 0.753 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.861 -3.578 18.284 20.221 hybrid contribution 0.423 0.451 -0.773 0.990 sum -7.437 -3.127 17.511 19.280 Atomic orbital electron populations 1.22227 0.96773 1.01219 1.02649 1.21163 0.93889 0.83042 1.02989 1.57688 1.73532 1.19624 1.32383 1.19003 0.97461 0.87921 0.81905 1.21530 1.11063 1.22914 1.00943 0.92143 1.24919 0.95943 0.94895 0.98301 1.69921 1.32466 1.25321 1.25897 0.86474 0.81780 0.78245 0.81141 1.19654 1.21018 1.20848 1.02133 0.73631 0.73269 0.72650 1.93652 1.60362 1.61798 1.78878 1.93521 1.80624 1.52099 1.71783 1.56369 1.44851 1.21485 1.65561 1.19417 0.86573 0.96248 0.88490 0.88625 1.21966 0.93271 1.00572 1.01077 1.21548 0.98709 1.01241 0.94155 1.20505 0.92661 1.01746 0.96890 1.19614 0.95163 0.99302 0.92851 1.21080 0.96941 1.01941 0.94799 1.21064 0.93169 1.00075 0.99365 1.21105 0.99243 1.01004 0.93292 1.21444 0.96994 0.97344 0.96019 1.19937 0.93319 1.00794 0.95185 0.91448 0.92392 0.93017 0.90618 0.90361 0.94392 0.94839 0.92807 0.75345 0.89992 0.90814 0.90882 0.91315 0.90569 0.90819 0.86377 0.86335 0.86143 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.88 37.16 0.37 -1.99 16 2 C 0.12 1.95 6.44 -4.04 -0.03 1.93 16 3 N -0.99 -19.79 2.93 -115.66 -0.34 -20.13 16 4 C 0.26 6.27 4.99 -5.19 -0.03 6.24 16 5 C -0.52 -14.57 9.38 -34.44 -0.32 -14.90 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 S 2.77 53.89 5.77 -107.50 -0.62 53.27 16 14 O -0.96 -22.97 17.38 -57.17 -0.99 -23.96 16 15 O -1.00 -19.77 14.43 -57.17 -0.83 -20.60 16 16 N -1.13 -16.90 4.58 -6.03 -0.03 -16.92 16 17 C 0.20 2.62 2.60 -69.26 -0.18 2.43 16 18 H 0.10 1.27 6.25 -51.93 -0.32 0.95 16 19 C -0.13 -1.42 5.29 -26.70 -0.14 -1.57 16 20 C -0.12 -1.05 5.98 -26.70 -0.16 -1.21 16 21 C -0.08 -0.70 5.67 -28.05 -0.16 -0.86 16 22 C -0.07 -0.76 5.74 -104.61 -0.60 -1.36 16 23 C -0.13 -1.32 9.61 -39.44 -0.38 -1.70 16 24 C -0.12 -1.24 10.05 -39.68 -0.40 -1.64 16 25 C -0.13 -1.55 10.05 -39.68 -0.40 -1.95 16 26 C -0.10 -1.40 9.21 -39.44 -0.36 -1.76 16 27 C -0.09 -1.18 5.55 -104.61 -0.58 -1.76 16 28 H 0.07 1.04 7.01 -51.93 -0.36 0.67 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.64 5.65 -51.93 -0.29 0.35 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.23 6.69 -51.93 -0.35 0.88 16 33 H 0.04 0.92 6.78 -51.93 -0.35 0.57 16 34 H 0.03 0.86 7.81 -51.93 -0.41 0.46 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.41 5.62 8.96 -34.47 -0.31 5.31 16 37 H 0.08 0.95 7.55 -51.93 -0.39 0.55 16 38 H 0.07 0.79 8.10 -51.93 -0.42 0.36 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 43 H 0.12 0.92 8.05 -52.49 -0.42 0.50 16 44 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.13 2.03 5.60 -52.49 -0.29 1.73 16 LS Contribution 374.61 15.07 5.65 5.65 Total: -1.00 -33.11 374.61 -11.76 -44.87 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.85 Total: 4.56 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -3.47 Total: -18.45 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.37 Total: -62.15 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -1.82 Total: -44.56 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 53.89 SS G_CDS: -0.62 Total: 53.27 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.11 -11.76 -44.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336910665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.251 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds