Wall clock time and date at job start Tue Mar 31 2020 21:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.46958 * 2 1 4 4 C 1.46495 * 120.00008 * 294.95629 * 3 2 1 5 5 C 1.50705 * 109.46751 * 274.99530 * 4 3 2 6 6 H 1.07996 * 120.00133 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99730 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99867 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46931 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47041 * 120.00028 * 9 7 5 12 12 H 1.48497 * 109.47281 * 240.00321 * 9 7 5 13 13 S 1.65604 * 119.99756 * 114.95039 * 3 2 1 14 14 O 1.42103 * 106.40101 * 149.27703 * 13 3 2 15 15 O 1.42100 * 106.40383 * 16.35937 * 13 3 2 16 16 N 1.65599 * 107.21814 * 262.81822 * 13 3 2 17 17 C 1.46496 * 120.00029 * 63.88628 * 16 13 3 18 18 H 1.09000 * 109.25164 * 352.47367 * 17 16 13 19 19 C 1.52729 * 109.25569 * 232.99894 * 17 16 13 20 20 C 1.53325 * 108.39086 * 188.65295 * 19 17 16 21 21 C 1.52732 * 108.38642 * 69.86482 * 20 19 17 22 22 C 1.50635 * 110.58642 * 308.88558 * 21 20 19 23 23 C 1.38911 * 117.75102 * 197.43246 * 22 21 20 24 24 C 1.37936 * 120.54219 * 180.59621 * 23 22 21 25 25 C 1.38263 * 119.77310 * 359.97438 * 24 23 22 26 26 C 1.37935 * 119.76991 * 359.88213 * 25 24 23 27 27 C 1.37669 * 122.56069 * 17.80529 * 22 21 20 28 28 H 1.09004 * 109.47357 * 63.58620 * 1 2 3 29 29 H 1.09004 * 109.47085 * 183.58041 * 1 2 3 30 30 H 1.09001 * 109.47532 * 303.58120 * 1 2 3 31 31 H 1.09002 * 109.47516 * 240.00731 * 2 1 3 32 32 H 1.09005 * 109.47402 * 119.99999 * 2 1 3 33 33 H 1.08998 * 109.47504 * 34.99402 * 4 3 2 34 34 H 1.09002 * 109.46997 * 154.99872 * 4 3 2 35 35 H 0.96999 * 119.99973 * 179.97438 * 8 7 5 36 36 H 0.96998 * 119.99689 * 243.88106 * 16 13 3 37 37 H 1.09001 * 109.68253 * 68.92867 * 19 17 16 38 38 H 1.09002 * 109.67865 * 308.37504 * 19 17 16 39 39 H 1.08993 * 109.68586 * 189.59346 * 20 19 17 40 40 H 1.09006 * 109.67649 * 310.14853 * 20 19 17 41 41 H 1.09003 * 109.25177 * 69.17152 * 21 20 19 42 42 H 1.09002 * 109.25869 * 188.60265 * 21 20 19 43 43 H 1.07994 * 119.72802 * 0.59646 * 23 22 21 44 44 H 1.08003 * 120.11198 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.11539 * 179.86676 * 25 24 23 46 46 H 1.07998 * 119.72369 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7577 2.2503 -1.1502 5 6 2.8180 2.0282 -2.1979 6 1 3.6072 1.3117 -2.0241 7 6 2.7811 2.7405 -3.3779 8 7 1.8209 3.6140 -3.5889 9 14 4.0957 2.4657 -4.6762 10 1 5.0559 1.4383 -4.1987 11 1 3.4591 2.0006 -5.9347 12 1 4.8170 3.7391 -4.9276 13 16 2.8646 1.9603 1.3004 14 8 3.7703 2.9293 0.7904 15 8 3.2805 0.8246 2.0464 16 7 1.7914 2.7813 2.2576 17 6 0.6825 2.0665 2.8945 18 1 0.6506 1.0441 2.5182 19 6 -0.6305 2.7692 2.5554 20 6 -1.7465 2.1429 3.3999 21 6 -1.5325 2.5471 4.8571 22 6 -0.1187 2.2537 5.2861 23 6 0.1477 2.2085 6.6487 24 6 1.4247 1.9567 7.1053 25 6 2.4486 1.7469 6.2001 26 6 2.1855 1.7885 4.8467 27 6 0.8999 2.0406 4.3848 28 1 -0.3634 0.4572 -0.9204 29 1 -0.3633 -1.0257 0.0642 30 1 -0.3634 0.5684 0.8561 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.7789 2.0158 -1.5685 34 1 1.7759 3.2921 -0.8300 35 1 1.7952 4.1154 -4.4188 36 1 1.8971 3.7354 2.3967 37 1 -0.8541 2.6385 1.4966 38 1 -0.5484 3.8315 2.7854 39 1 -2.7149 2.5064 3.0565 40 1 -1.7088 1.0571 3.3109 41 1 -1.7273 3.6140 4.9665 42 1 -2.2231 1.9896 5.4900 43 1 -0.6516 2.3719 7.3563 44 1 1.6241 1.9236 8.1662 45 1 3.4509 1.5515 6.5515 46 1 2.9857 1.6241 4.1403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336910665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:01 Heat of formation + Delta-G solvation = -86.413176 kcal Electronic energy + Delta-G solvation = -28782.954286 eV Core-core repulsion = 24990.476125 eV Total energy + Delta-G solvation = -3792.478160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.09917 -38.35427 -37.81284 -37.41119 -36.90322 -35.38657 -34.69584 -31.79164 -31.43450 -31.09803 -28.93744 -28.61206 -25.11933 -24.42895 -23.58636 -23.10014 -22.87440 -20.64890 -20.13516 -19.08928 -18.51108 -18.29994 -17.79806 -17.11553 -16.72750 -16.26661 -16.24594 -16.05367 -15.38187 -15.09119 -14.85732 -14.78577 -14.52894 -14.28864 -14.10447 -13.76020 -13.65150 -13.62952 -13.33985 -13.28761 -13.14945 -13.04627 -12.76682 -12.69599 -12.66923 -12.47226 -12.39901 -12.20542 -12.15334 -11.88265 -11.74943 -11.63949 -11.51689 -11.36450 -10.60453 -10.53731 -9.82509 -9.65160 -9.47178 -8.20176 -6.30468 -0.37055 0.45034 0.49454 1.37086 1.39868 1.51164 1.99494 2.40116 2.58600 2.86988 3.10793 3.42069 3.61045 3.75376 3.93576 3.96193 4.08421 4.15337 4.17933 4.26581 4.36188 4.44068 4.49912 4.54841 4.64645 4.68635 4.74391 4.78304 5.00321 5.02523 5.07383 5.09921 5.15241 5.16524 5.20272 5.24088 5.33728 5.40959 5.48903 5.58962 5.62977 5.66636 5.71358 5.72620 5.89746 6.08501 6.14132 6.17286 6.77274 7.37745 8.87367 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.003680 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.842869 B = 7606.217116 C = 8209.367177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.993 5.993 4 C 0.277 3.723 5 C -0.547 4.547 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.922 5.922 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.269 1.269 12 H -0.280 1.280 13 S 2.790 3.210 14 O -1.014 7.014 15 O -1.004 7.004 16 N -1.113 6.113 17 C 0.196 3.804 18 H 0.091 0.909 19 C -0.128 4.128 20 C -0.115 4.115 21 C -0.079 4.079 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.117 4.117 25 C -0.142 4.142 26 C -0.130 4.130 27 C -0.106 4.106 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.036 0.964 34 H 0.013 0.987 35 H 0.267 0.733 36 H 0.420 0.580 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.129 0.871 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 -3.844 20.064 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.835 5.835 4 C 0.153 3.847 5 C -0.586 4.586 6 H 0.066 0.934 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.194 1.194 12 H -0.206 1.206 13 S 2.799 3.201 14 O -0.997 6.997 15 O -0.987 6.987 16 N -0.874 5.874 17 C 0.089 3.911 18 H 0.109 0.891 19 C -0.167 4.167 20 C -0.153 4.153 21 C -0.116 4.116 22 C -0.072 4.072 23 C -0.145 4.145 24 C -0.135 4.135 25 C -0.160 4.160 26 C -0.149 4.149 27 C -0.108 4.108 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.255 0.745 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.167 0.833 44 H 0.164 0.836 45 H 0.147 0.853 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.939 -4.050 20.046 22.739 hybrid contribution 1.055 0.568 -1.183 1.684 sum -8.884 -3.482 18.863 21.139 Atomic orbital electron populations 1.22156 0.94127 1.03286 1.02423 1.21409 0.96185 0.81275 1.02989 1.57559 1.73736 1.20580 1.31633 1.18547 0.96311 0.87517 0.82321 1.21862 1.11648 1.22825 1.02275 0.93393 1.25675 0.97921 0.94711 1.00252 1.69996 1.33697 1.25870 1.26623 0.85594 0.79381 0.78092 0.79160 1.19725 1.19395 1.20569 1.01423 0.73468 0.72651 0.72563 1.93575 1.62883 1.63228 1.80057 1.93506 1.81047 1.52480 1.71655 1.55950 1.45058 1.21713 1.64636 1.19653 0.86540 0.96006 0.88855 0.89143 1.21969 0.92870 1.00739 1.01154 1.21565 0.98456 1.01228 0.94024 1.20579 0.91321 1.02812 0.96840 1.19949 0.95929 0.98211 0.93066 1.21486 0.97660 1.00436 0.94941 1.21413 0.92844 0.98748 1.00485 1.21303 1.00483 1.01306 0.92865 1.21411 0.97065 0.99722 0.96660 1.19936 0.93622 1.02173 0.95076 0.93111 0.89363 0.91530 0.91779 0.89181 0.94590 0.96899 0.92422 0.74528 0.90795 0.90546 0.88926 0.91153 0.89418 0.88513 0.83255 0.83565 0.85339 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 9.88 71.98 0.71 -3.61 16 2 C 0.11 3.64 6.44 86.38 0.56 4.19 16 3 N -0.99 -40.98 2.93 -519.83 -1.52 -42.50 16 4 C 0.28 13.85 4.99 85.64 0.43 14.28 16 5 C -0.55 -31.21 9.38 25.60 0.24 -30.97 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.79 5.46 84.66 0.46 1.25 16 8 N -0.92 -53.78 13.29 21.45 0.28 -53.49 16 9 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 13 S 2.79 112.99 5.77 -56.49 -0.33 112.67 16 14 O -1.01 -50.86 17.38 -128.00 -2.22 -53.08 16 15 O -1.00 -41.24 14.43 -128.00 -1.85 -43.08 16 16 N -1.11 -34.50 4.58 -173.00 -0.79 -35.29 16 17 C 0.20 5.05 2.60 44.13 0.11 5.17 16 18 H 0.09 2.39 6.25 -2.39 -0.01 2.37 16 19 C -0.13 -2.64 5.29 30.61 0.16 -2.48 16 20 C -0.11 -1.69 5.98 30.61 0.18 -1.50 16 21 C -0.08 -1.06 5.67 29.74 0.17 -0.89 16 22 C -0.07 -1.39 5.74 -19.86 -0.11 -1.50 16 23 C -0.13 -2.16 9.61 22.36 0.21 -1.94 16 24 C -0.12 -2.14 10.05 22.20 0.22 -1.92 16 25 C -0.14 -3.32 10.05 22.20 0.22 -3.10 16 26 C -0.13 -3.70 9.21 22.36 0.21 -3.49 16 27 C -0.11 -2.68 5.55 -19.86 -0.11 -2.79 16 28 H 0.05 1.54 7.01 -2.38 -0.02 1.52 16 29 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.07 1.57 5.65 -2.39 -0.01 1.56 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.09 2.84 6.69 -2.38 -0.02 2.82 16 33 H 0.04 1.81 6.78 -2.39 -0.02 1.79 16 34 H 0.01 0.70 7.81 -2.39 -0.02 0.68 16 35 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 36 H 0.42 11.93 8.96 -96.75 -0.87 11.07 16 37 H 0.07 1.64 7.55 -2.39 -0.02 1.62 16 38 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.03 8.10 -2.38 -0.02 1.01 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 0.92 8.13 -2.39 -0.02 0.90 16 43 H 0.15 1.59 8.05 -2.91 -0.02 1.56 16 44 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 45 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 46 H 0.10 3.40 5.60 -2.91 -0.02 3.38 16 Total: -1.00 -73.18 374.61 -0.61 -73.79 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.12 Total: 23.13 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 3.67 Total: -29.31 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -2.03 Total: -131.28 kcal Atomic # 8 Polarization: -92.09 SS G_CDS: -4.07 Total: -96.16 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 112.99 SS G_CDS: -0.33 Total: 112.67 kcal Total: -73.18 -0.61 -73.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336910665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.622 kcal (2) G-P(sol) polarization free energy of solvation -73.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds