Wall clock time and date at job start Tue Mar 31 2020 21:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47528 * 2 1 4 4 C 1.46509 * 119.99771 * 274.77509 * 3 2 1 5 5 C 1.50692 * 109.47038 * 274.99551 * 4 3 2 6 6 H 1.08009 * 120.00141 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00157 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47110 * 59.99962 * 9 7 5 11 11 H 1.48494 * 109.47180 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46894 * 300.00092 * 9 7 5 13 13 S 1.65596 * 120.00325 * 94.77064 * 3 2 1 14 14 O 1.42100 * 106.40421 * 152.48420 * 13 3 2 15 15 O 1.42097 * 106.40152 * 19.56345 * 13 3 2 16 16 N 1.65603 * 107.22081 * 266.02295 * 13 3 2 17 17 C 1.46494 * 120.00053 * 294.51909 * 16 13 3 18 18 H 1.09001 * 109.46947 * 22.39874 * 17 16 13 19 19 C 1.50700 * 109.47011 * 262.39875 * 17 16 13 20 20 C 1.38233 * 119.99839 * 140.00181 * 19 17 16 21 21 C 1.38239 * 119.99752 * 180.25152 * 20 19 17 22 22 C 1.38235 * 120.00102 * 359.53565 * 21 20 19 23 23 C 1.38238 * 119.99656 * 0.41820 * 22 21 20 24 24 C 1.38229 * 120.00242 * 359.81514 * 23 22 21 25 25 C 1.53001 * 109.47258 * 142.39552 * 17 16 13 26 26 C 1.52998 * 117.49614 * 2.80812 * 25 17 16 27 27 C 1.52999 * 117.49927 * 294.18511 * 25 17 16 28 28 H 1.08998 * 109.47642 * 182.45978 * 1 2 3 29 29 H 1.09004 * 109.47180 * 302.46027 * 1 2 3 30 30 H 1.09005 * 109.46827 * 62.46013 * 1 2 3 31 31 H 1.09002 * 109.47159 * 240.00054 * 2 1 3 32 32 H 1.09003 * 109.47192 * 119.99890 * 2 1 3 33 33 H 1.08996 * 109.47210 * 34.99942 * 4 3 2 34 34 H 1.09004 * 109.46963 * 154.99595 * 4 3 2 35 35 H 0.97000 * 120.00037 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99762 * 114.51642 * 16 13 3 37 37 H 1.07997 * 120.00152 * 359.97438 * 20 19 17 38 38 H 1.08004 * 120.00016 * 179.72389 * 21 20 19 39 39 H 1.07999 * 120.00114 * 180.21347 * 22 21 20 40 40 H 1.08000 * 119.99420 * 179.78699 * 23 22 21 41 41 H 1.08002 * 120.00200 * 179.97438 * 24 23 22 42 42 H 1.09004 * 115.54879 * 148.51039 * 25 17 16 43 43 H 1.08999 * 117.50097 * 359.97438 * 26 25 17 44 44 H 1.09000 * 117.49890 * 145.01648 * 26 25 17 45 45 H 1.09005 * 117.49614 * 214.97588 * 27 25 17 46 46 H 1.08997 * 117.49782 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1630 2.1069 -1.2644 5 6 3.5018 1.7862 -1.8774 6 1 4.1772 1.1091 -1.3755 7 6 3.8644 2.3572 -3.0788 8 7 3.0422 3.1820 -3.6896 9 14 5.5237 1.9591 -3.8391 10 1 5.6138 0.4989 -4.0941 11 1 5.6709 2.6958 -5.1199 12 1 6.6057 2.3665 -2.9070 13 16 2.4069 2.1220 1.4291 14 8 3.3944 3.0962 1.1206 15 8 2.6094 1.0834 2.3774 16 7 1.0668 2.9568 1.9288 17 6 0.5751 4.0911 1.1429 18 1 0.9291 4.0021 0.1158 19 6 1.0871 5.3761 1.7410 20 6 1.5095 6.4021 0.9166 21 6 1.9839 7.5789 1.4654 22 6 2.0270 7.7332 2.8384 23 6 1.6037 6.7075 3.6628 24 6 1.1337 5.5289 3.1141 25 6 -0.9548 4.0961 1.1564 26 6 -1.6573 3.0247 1.9927 27 6 -1.6712 2.9341 0.4655 28 1 -0.3634 -1.0267 0.0441 29 1 -0.3634 0.5516 0.8671 30 1 -0.3633 0.4752 -0.9113 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3690 1.8071 -1.9483 34 1 2.0962 3.1788 -1.0778 35 1 3.2972 3.5834 -4.5351 36 1 0.6073 2.6946 2.7418 37 1 1.4730 6.2828 -0.1561 38 1 2.3181 8.3789 0.8213 39 1 2.3944 8.6539 3.2671 40 1 1.6405 6.8268 4.7355 41 1 0.8034 4.7274 3.7582 42 1 -1.4222 5.0794 1.1020 43 1 -1.0296 2.3161 2.5330 44 1 -2.5871 3.3030 2.4889 45 1 -2.6102 3.1528 -0.0432 46 1 -1.0526 2.1663 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336911818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:27 Heat of formation + Delta-G solvation = -21.608815 kcal Electronic energy + Delta-G solvation = -29128.882579 eV Core-core repulsion = 25339.214547 eV Total energy + Delta-G solvation = -3789.668032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.59853 -37.68848 -36.61114 -36.03284 -35.11696 -33.81367 -32.67619 -30.93902 -30.54180 -30.02893 -26.61638 -26.26341 -23.31480 -22.57206 -22.20042 -21.78089 -21.59190 -20.15426 -18.87331 -17.42268 -17.16794 -16.52237 -16.37372 -16.08075 -15.52240 -15.17086 -14.78945 -14.47836 -14.37427 -13.86260 -13.56315 -13.24036 -13.21652 -13.02253 -12.87185 -12.56453 -12.25504 -12.06941 -11.88697 -11.73062 -11.45954 -11.36765 -11.31605 -11.22943 -11.05582 -10.94511 -10.90954 -10.85719 -10.46920 -10.46304 -10.32048 -10.11497 -9.98791 -9.74047 -9.31097 -8.71174 -8.54482 -8.42934 -8.08820 -6.07139 -4.10198 1.22280 1.54117 1.60933 3.33810 3.37296 3.42277 3.50249 3.82491 3.94996 4.18232 4.44877 4.63142 4.88822 4.94428 5.04177 5.08853 5.13298 5.22212 5.23672 5.31054 5.37884 5.42960 5.49647 5.64913 5.67513 5.70513 5.72728 5.75461 5.90866 5.97884 6.06113 6.15505 6.16110 6.18851 6.27969 6.35931 6.57384 6.61589 6.63165 6.68973 6.85206 7.11766 7.18581 7.23245 7.40430 7.61868 7.90915 8.20047 8.91533 9.54909 11.01272 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.005327 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.750498 B = 5254.733986 C = 6438.850762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.259 3.741 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.776 3.224 14 O -0.957 6.957 15 O -1.001 7.001 16 N -1.127 6.127 17 C 0.224 3.776 18 H 0.108 0.892 19 C -0.085 4.085 20 C -0.099 4.099 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.102 4.102 25 C -0.153 4.153 26 C -0.178 4.178 27 C -0.179 4.179 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.407 0.593 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.958 3.461 10.969 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.784 3.216 14 O -0.940 6.940 15 O -0.985 6.985 16 N -0.885 5.885 17 C 0.116 3.884 18 H 0.125 0.875 19 C -0.086 4.086 20 C -0.118 4.118 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.121 4.121 25 C -0.172 4.172 26 C -0.215 4.215 27 C -0.215 4.215 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.242 0.758 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.019 3.578 11.075 15.357 hybrid contribution 0.383 -0.166 -0.368 0.556 sum -9.636 3.412 10.707 14.804 Atomic orbital electron populations 1.22371 0.97293 1.01503 1.02041 1.21134 0.93045 0.83213 1.03488 1.57740 1.81028 1.21451 1.23098 1.19057 0.97455 0.90718 0.79086 1.21434 1.01947 1.27717 1.05502 0.92269 1.24894 0.97276 0.94829 0.96839 1.69893 1.36133 1.30283 1.17178 0.86608 0.84390 0.78412 0.78358 1.20214 1.21207 1.20032 1.02138 0.73594 0.73116 0.72788 1.93653 1.55377 1.60963 1.83990 1.93525 1.85257 1.57413 1.62306 1.56544 1.51239 1.44064 1.36662 1.19164 0.91747 0.82514 0.94967 0.87481 1.20132 0.99141 0.95420 0.93953 1.21125 0.97421 0.92994 1.00261 1.21109 0.99760 0.97754 0.95092 1.21094 1.00481 0.98871 0.93849 1.21062 1.00128 0.93926 0.99423 1.20853 0.99561 0.97181 0.94479 1.22515 0.92919 0.95387 1.06405 1.22946 1.01890 1.02215 0.94451 1.23224 1.02423 1.01224 0.94651 0.92204 0.92944 0.91845 0.89728 0.90654 0.94635 0.94773 0.92680 0.75769 0.85444 0.86116 0.86525 0.86495 0.86518 0.86992 0.88592 0.89013 0.88866 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.11 37.16 0.34 -1.98 16 2 C 0.12 1.98 6.38 -4.05 -0.03 1.96 16 3 N -0.99 -19.69 2.82 -115.66 -0.33 -20.01 16 4 C 0.26 6.13 4.84 -5.19 -0.03 6.11 16 5 C -0.53 -14.42 9.38 -34.44 -0.32 -14.74 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -25.32 13.29 55.43 0.74 -24.59 16 9 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 S 2.78 54.68 5.98 -107.50 -0.64 54.04 16 14 O -0.96 -23.05 17.00 -57.17 -0.97 -24.03 16 15 O -1.00 -20.76 16.62 -57.17 -0.95 -21.71 16 16 N -1.13 -16.70 4.33 -5.88 -0.03 -16.72 16 17 C 0.22 3.27 2.73 -69.08 -0.19 3.08 16 18 H 0.11 1.82 5.63 -51.93 -0.29 1.53 16 19 C -0.08 -1.27 4.91 -104.62 -0.51 -1.78 16 20 C -0.10 -1.52 9.67 -39.58 -0.38 -1.90 16 21 C -0.12 -1.62 10.05 -39.58 -0.40 -2.02 16 22 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 23 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 24 C -0.10 -1.39 9.32 -39.58 -0.37 -1.76 16 25 C -0.15 -1.79 5.72 -90.62 -0.52 -2.31 16 26 C -0.18 -1.78 9.70 -26.73 -0.26 -2.04 16 27 C -0.18 -2.01 10.13 -26.73 -0.27 -2.28 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.65 7.11 -51.93 -0.37 0.28 16 30 H 0.06 0.88 7.47 -51.93 -0.39 0.49 16 31 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 32 H 0.08 1.24 6.89 -51.93 -0.36 0.88 16 33 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.03 0.85 5.84 -51.93 -0.30 0.55 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.41 4.95 6.35 -34.47 -0.22 4.74 16 37 H 0.13 1.93 8.04 -52.49 -0.42 1.51 16 38 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.38 7.50 -52.49 -0.39 0.99 16 42 H 0.11 1.23 8.06 -51.93 -0.42 0.81 16 43 H 0.10 0.95 5.94 -51.93 -0.31 0.64 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.11 1.38 5.02 -51.93 -0.26 1.12 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -32.90 383.19 -11.91 -44.81 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.66 Total: 7.72 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -3.83 Total: -21.94 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.38 Total: -61.32 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -1.92 Total: -45.74 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 54.68 SS G_CDS: -0.64 Total: 54.04 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.90 -11.91 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336911818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.206 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds