Wall clock time and date at job start Tue Mar 31 2020 21:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.47528 * 2 1 4 4 C 1.46509 * 119.99771 * 274.77509 * 3 2 1 5 5 C 1.50692 * 109.47038 * 274.99551 * 4 3 2 6 6 H 1.08009 * 120.00141 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00157 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47110 * 59.99962 * 9 7 5 11 11 H 1.48494 * 109.47180 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46894 * 300.00092 * 9 7 5 13 13 S 1.65596 * 120.00325 * 94.77064 * 3 2 1 14 14 O 1.42100 * 106.40421 * 152.48420 * 13 3 2 15 15 O 1.42097 * 106.40152 * 19.56345 * 13 3 2 16 16 N 1.65603 * 107.22081 * 266.02295 * 13 3 2 17 17 C 1.46494 * 120.00053 * 294.51909 * 16 13 3 18 18 H 1.09001 * 109.46947 * 22.39874 * 17 16 13 19 19 C 1.50700 * 109.47011 * 262.39875 * 17 16 13 20 20 C 1.38233 * 119.99839 * 140.00181 * 19 17 16 21 21 C 1.38239 * 119.99752 * 180.25152 * 20 19 17 22 22 C 1.38235 * 120.00102 * 359.53565 * 21 20 19 23 23 C 1.38238 * 119.99656 * 0.41820 * 22 21 20 24 24 C 1.38229 * 120.00242 * 359.81514 * 23 22 21 25 25 C 1.53001 * 109.47258 * 142.39552 * 17 16 13 26 26 C 1.52998 * 117.49614 * 2.80812 * 25 17 16 27 27 C 1.52999 * 117.49927 * 294.18511 * 25 17 16 28 28 H 1.08998 * 109.47642 * 182.45978 * 1 2 3 29 29 H 1.09004 * 109.47180 * 302.46027 * 1 2 3 30 30 H 1.09005 * 109.46827 * 62.46013 * 1 2 3 31 31 H 1.09002 * 109.47159 * 240.00054 * 2 1 3 32 32 H 1.09003 * 109.47192 * 119.99890 * 2 1 3 33 33 H 1.08996 * 109.47210 * 34.99942 * 4 3 2 34 34 H 1.09004 * 109.46963 * 154.99595 * 4 3 2 35 35 H 0.97000 * 120.00037 * 180.02562 * 8 7 5 36 36 H 0.97005 * 119.99762 * 114.51642 * 16 13 3 37 37 H 1.07997 * 120.00152 * 359.97438 * 20 19 17 38 38 H 1.08004 * 120.00016 * 179.72389 * 21 20 19 39 39 H 1.07999 * 120.00114 * 180.21347 * 22 21 20 40 40 H 1.08000 * 119.99420 * 179.78699 * 23 22 21 41 41 H 1.08002 * 120.00200 * 179.97438 * 24 23 22 42 42 H 1.09004 * 115.54879 * 148.51039 * 25 17 16 43 43 H 1.08999 * 117.50097 * 359.97438 * 26 25 17 44 44 H 1.09000 * 117.49890 * 145.01648 * 26 25 17 45 45 H 1.09005 * 117.49614 * 214.97588 * 27 25 17 46 46 H 1.08997 * 117.49782 * 359.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1630 2.1069 -1.2644 5 6 3.5018 1.7862 -1.8774 6 1 4.1772 1.1091 -1.3755 7 6 3.8644 2.3572 -3.0788 8 7 3.0422 3.1820 -3.6896 9 14 5.5237 1.9591 -3.8391 10 1 5.6138 0.4989 -4.0941 11 1 5.6709 2.6958 -5.1199 12 1 6.6057 2.3665 -2.9070 13 16 2.4069 2.1220 1.4291 14 8 3.3944 3.0962 1.1206 15 8 2.6094 1.0834 2.3774 16 7 1.0668 2.9568 1.9288 17 6 0.5751 4.0911 1.1429 18 1 0.9291 4.0021 0.1158 19 6 1.0871 5.3761 1.7410 20 6 1.5095 6.4021 0.9166 21 6 1.9839 7.5789 1.4654 22 6 2.0270 7.7332 2.8384 23 6 1.6037 6.7075 3.6628 24 6 1.1337 5.5289 3.1141 25 6 -0.9548 4.0961 1.1564 26 6 -1.6573 3.0247 1.9927 27 6 -1.6712 2.9341 0.4655 28 1 -0.3634 -1.0267 0.0441 29 1 -0.3634 0.5516 0.8671 30 1 -0.3633 0.4752 -0.9113 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.3690 1.8071 -1.9483 34 1 2.0962 3.1788 -1.0778 35 1 3.2972 3.5834 -4.5351 36 1 0.6073 2.6946 2.7418 37 1 1.4730 6.2828 -0.1561 38 1 2.3181 8.3789 0.8213 39 1 2.3944 8.6539 3.2671 40 1 1.6405 6.8268 4.7355 41 1 0.8034 4.7274 3.7582 42 1 -1.4222 5.0794 1.1020 43 1 -1.0296 2.3161 2.5330 44 1 -2.5871 3.3030 2.4889 45 1 -2.6102 3.1528 -0.0432 46 1 -1.0526 2.1663 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336911818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:27 Heat of formation + Delta-G solvation = -42.019023 kcal Electronic energy + Delta-G solvation = -29129.767632 eV Core-core repulsion = 25339.214547 eV Total energy + Delta-G solvation = -3790.553085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65758 -38.69135 -38.29195 -37.64042 -36.84649 -34.93285 -34.69594 -32.04563 -31.61429 -31.53648 -28.49047 -27.35910 -25.01020 -23.74229 -23.27666 -22.97505 -22.69736 -21.25652 -20.31273 -19.09575 -18.47847 -18.25799 -17.85395 -17.52212 -16.76643 -16.50240 -16.18030 -15.87828 -15.45933 -15.41702 -14.80771 -14.73512 -14.36751 -14.28884 -14.09360 -13.87783 -13.60573 -13.56360 -13.47978 -13.27294 -13.07623 -13.03820 -12.76967 -12.72393 -12.42842 -12.27451 -12.18111 -12.15421 -12.03434 -11.87391 -11.74854 -11.63958 -11.26835 -11.04408 -10.62190 -10.45503 -9.81170 -9.76708 -9.57496 -8.18954 -6.29166 -0.34715 0.47766 0.55175 1.38055 1.41409 1.48112 2.02238 2.40396 2.60701 2.88825 2.95819 3.12142 3.45193 3.62391 3.91253 3.92301 4.01428 4.14734 4.18208 4.20084 4.27566 4.32871 4.45198 4.48988 4.54357 4.62953 4.69479 4.72293 4.86605 4.88773 5.04177 5.10323 5.13243 5.16491 5.18791 5.22409 5.30056 5.34967 5.47096 5.53910 5.60773 5.65099 5.71555 5.77667 5.89983 6.13614 6.16170 6.16647 6.77730 7.38789 8.87904 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010154 B = 0.005327 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2756.750498 B = 5254.733986 C = 6438.850762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.994 5.994 4 C 0.278 3.722 5 C -0.548 4.548 6 H 0.048 0.952 7 C 0.017 3.983 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.265 1.265 11 H -0.276 1.276 12 H -0.281 1.281 13 S 2.791 3.209 14 O -1.006 7.006 15 O -1.011 7.011 16 N -1.105 6.105 17 C 0.226 3.774 18 H 0.075 0.925 19 C -0.101 4.101 20 C -0.130 4.130 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.113 4.113 25 C -0.160 4.160 26 C -0.157 4.157 27 C -0.186 4.186 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.030 0.970 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.423 0.577 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 3.346 12.684 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.835 5.835 4 C 0.155 3.845 5 C -0.587 4.587 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.774 3.226 10 H -0.189 1.189 11 H -0.201 1.201 12 H -0.207 1.207 13 S 2.799 3.201 14 O -0.989 6.989 15 O -0.995 6.995 16 N -0.868 5.868 17 C 0.119 3.881 18 H 0.093 0.907 19 C -0.103 4.103 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.132 4.132 25 C -0.179 4.179 26 C -0.194 4.194 27 C -0.223 4.223 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.262 0.738 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.152 0.848 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.133 0.867 45 H 0.125 0.875 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.202 3.429 12.806 17.356 hybrid contribution 0.730 -0.105 -0.848 1.124 sum -10.472 3.324 11.958 16.239 Atomic orbital electron populations 1.22294 0.94278 1.03433 1.02286 1.21380 0.95615 0.81402 1.03298 1.57584 1.81545 1.22641 1.21738 1.18591 0.95597 0.90099 0.80249 1.21786 1.03325 1.27623 1.05969 0.93412 1.25627 1.00446 0.94802 0.97383 1.69977 1.37532 1.30868 1.17517 0.85760 0.80250 0.78920 0.77691 1.18938 1.20079 1.20713 1.01413 0.73769 0.72515 0.72400 1.93591 1.58199 1.62419 1.84684 1.93498 1.85834 1.57833 1.62349 1.55996 1.50031 1.43648 1.37173 1.19092 0.93770 0.82167 0.93113 0.90711 1.20218 0.99904 0.95285 0.94845 1.21217 0.99332 0.94497 0.99829 1.21374 0.99511 0.97514 0.96306 1.21478 0.99641 1.00088 0.93243 1.21482 0.98767 0.93248 1.01089 1.21123 0.99750 0.98375 0.93921 1.22402 0.90751 0.96371 1.08405 1.23049 1.02285 1.00491 0.93573 1.23265 1.02629 1.00470 0.95938 0.89442 0.91726 0.92530 0.90730 0.90027 0.95226 0.96483 0.92446 0.73827 0.87077 0.84694 0.83587 0.83473 0.84810 0.86202 0.88280 0.86659 0.87507 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 9.11 71.98 0.66 -3.51 16 2 C 0.11 3.64 6.38 86.38 0.55 4.19 16 3 N -0.99 -40.42 2.82 -519.85 -1.47 -41.88 16 4 C 0.28 13.74 4.84 85.63 0.41 14.15 16 5 C -0.55 -30.93 9.38 25.60 0.24 -30.69 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 7 C 0.02 0.98 5.46 84.65 0.46 1.44 16 8 N -0.92 -53.18 13.29 21.45 0.28 -52.89 16 9 Si 0.95 44.91 29.54 68.60 2.03 46.94 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 13 S 2.79 111.66 5.98 -56.49 -0.34 111.33 16 14 O -1.01 -50.32 17.00 -128.00 -2.18 -52.49 16 15 O -1.01 -41.53 16.62 -128.00 -2.13 -43.65 16 16 N -1.10 -32.40 4.33 -172.53 -0.75 -33.14 16 17 C 0.23 6.72 2.73 44.25 0.12 6.85 16 18 H 0.07 2.73 5.63 -2.39 -0.01 2.72 16 19 C -0.10 -3.06 4.91 -19.87 -0.10 -3.15 16 20 C -0.13 -4.16 9.67 22.27 0.22 -3.94 16 21 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 22 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 23 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 24 C -0.11 -2.94 9.32 22.27 0.21 -2.73 16 25 C -0.16 -3.60 5.72 -10.79 -0.06 -3.66 16 26 C -0.16 -2.72 9.70 30.59 0.30 -2.42 16 27 C -0.19 -3.94 10.13 30.59 0.31 -3.63 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.47 7.11 -2.38 -0.02 1.45 16 30 H 0.06 1.52 7.47 -2.38 -0.02 1.51 16 31 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 32 H 0.08 2.63 6.89 -2.39 -0.02 2.61 16 33 H 0.03 1.48 8.11 -2.39 -0.02 1.47 16 34 H 0.02 0.92 5.84 -2.38 -0.01 0.90 16 35 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.42 9.60 6.35 -96.74 -0.61 8.98 16 37 H 0.11 3.74 8.04 -2.91 -0.02 3.72 16 38 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.13 2.87 7.50 -2.91 -0.02 2.85 16 42 H 0.12 2.53 8.06 -2.39 -0.02 2.51 16 43 H 0.10 1.65 5.94 -2.39 -0.01 1.64 16 44 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.09 2.31 5.02 -2.39 -0.01 2.30 16 Total: -1.00 -72.38 383.19 -0.18 -72.56 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.38 Total: 29.05 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 3.99 Total: -35.81 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -1.93 Total: -127.92 kcal Atomic # 8 Polarization: -91.84 SS G_CDS: -4.30 Total: -96.15 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 111.66 SS G_CDS: -0.34 Total: 111.33 kcal Total: -72.38 -0.18 -72.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336911818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.542 kcal (2) G-P(sol) polarization free energy of solvation -72.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds