Wall clock time and date at job start Tue Mar 31 2020 21:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46497 * 109.47420 * 2 1 4 4 C 1.46502 * 119.99690 * 85.00479 * 3 2 1 5 5 C 1.50697 * 109.47482 * 85.00126 * 4 3 2 6 6 H 1.08002 * 119.99937 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00310 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00201 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00354 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47072 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47194 * 119.99617 * 9 7 5 12 12 H 1.48496 * 109.47666 * 240.00188 * 9 7 5 13 13 S 1.65598 * 120.00477 * 265.00529 * 3 2 1 14 14 O 1.42097 * 106.40489 * 203.54058 * 13 3 2 15 15 O 1.42104 * 106.40016 * 336.45565 * 13 3 2 16 16 N 1.65599 * 107.21807 * 89.99749 * 13 3 2 17 17 C 1.46494 * 120.00023 * 90.00602 * 16 13 3 18 18 C 1.50700 * 109.47537 * 93.29120 * 17 16 13 19 19 C 1.38238 * 119.99554 * 275.85039 * 18 17 16 20 20 C 1.38244 * 119.99482 * 179.76579 * 19 18 17 21 21 C 1.38230 * 119.99967 * 0.50784 * 20 19 18 22 22 C 1.38238 * 120.00011 * 359.74279 * 21 20 19 23 23 C 1.38230 * 120.00033 * 96.12404 * 18 17 16 24 24 C 1.46496 * 119.99791 * 270.00003 * 16 13 3 25 25 C 1.53001 * 117.49679 * 183.13858 * 24 16 13 26 26 C 1.53002 * 117.49935 * 114.47723 * 24 16 13 27 27 H 1.09012 * 109.47063 * 299.99742 * 1 2 3 28 28 H 1.08998 * 109.47597 * 59.99123 * 1 2 3 29 29 H 1.08998 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47045 * 240.00004 * 2 1 3 31 31 H 1.09004 * 109.47292 * 120.00605 * 2 1 3 32 32 H 1.09000 * 109.47057 * 205.00439 * 4 3 2 33 33 H 1.09006 * 109.47220 * 324.99619 * 4 3 2 34 34 H 0.96999 * 120.00315 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47351 * 213.29437 * 17 16 13 36 36 H 1.09004 * 109.46997 * 333.28711 * 17 16 13 37 37 H 1.07999 * 120.00269 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.99791 * 180.23026 * 20 19 18 39 39 H 1.07996 * 120.00188 * 179.73010 * 21 20 19 40 40 H 1.08003 * 119.99874 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.00039 * 0.02562 * 23 18 17 42 42 H 1.08996 * 115.55569 * 328.80299 * 24 16 13 43 43 H 1.08998 * 117.49800 * 359.97438 * 25 24 16 44 44 H 1.08999 * 117.50182 * 145.02494 * 25 24 16 45 45 H 1.08995 * 117.50413 * 214.97769 * 26 24 16 46 46 H 1.09003 * 117.49598 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1085 1.2640 5 6 3.4948 1.7886 1.8823 6 1 4.1721 1.1109 1.3839 7 6 3.8527 2.3603 3.0849 8 7 3.0278 3.1852 3.6921 9 14 5.5090 1.9632 3.8517 10 1 6.2455 1.0163 2.9764 11 1 6.2973 3.2127 4.0020 12 1 5.3015 1.3453 5.1860 13 16 2.4121 2.1203 -1.4286 14 8 3.3284 3.1570 -1.1049 15 8 2.7095 1.0800 -2.3499 16 7 1.0430 2.8643 -1.9892 17 6 0.7517 4.2477 -1.6053 18 6 1.2997 5.1852 -2.6502 19 6 2.6256 5.5735 -2.6031 20 6 3.1296 6.4297 -3.5644 21 6 2.3051 6.9057 -4.5666 22 6 0.9780 6.5214 -4.6107 23 6 0.4753 5.6612 -3.6524 24 6 0.1233 2.1392 -2.8692 25 6 -1.0851 2.9042 -3.4127 26 6 -1.2771 1.8367 -2.3324 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0922 3.1801 1.0757 33 1 1.3618 1.8096 1.9454 34 1 3.2797 3.5877 4.5380 35 1 -0.3269 4.3832 -1.5255 36 1 1.2170 4.4635 -0.6435 37 1 3.2686 5.2054 -1.8173 38 1 4.1664 6.7301 -3.5298 39 1 2.6977 7.5780 -5.3151 40 1 0.3337 6.8937 -5.3935 41 1 -0.5618 5.3616 -3.6864 42 1 0.5836 1.3967 -3.5212 43 1 -1.1960 3.9469 -3.1151 44 1 -1.4201 2.6647 -4.4219 45 1 -1.7384 0.8955 -2.6314 46 1 -1.5140 2.1769 -1.3243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336915175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:11 Heat of formation + Delta-G solvation = -14.308843 kcal Electronic energy + Delta-G solvation = -29036.931638 eV Core-core repulsion = 25247.580156 eV Total energy + Delta-G solvation = -3789.351482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.45444 -37.86611 -36.66786 -36.00946 -35.16997 -33.70101 -32.66767 -30.89938 -30.61268 -29.96348 -26.60081 -25.99874 -23.32352 -22.81110 -22.22436 -22.01548 -21.43548 -20.71248 -18.44163 -17.59896 -16.99768 -16.68621 -16.33370 -16.01392 -15.30136 -15.07175 -14.82390 -14.70431 -14.33263 -13.92065 -13.64378 -13.30542 -13.12859 -12.93922 -12.80438 -12.37766 -12.22795 -12.08033 -12.01315 -11.70635 -11.66952 -11.52649 -11.42594 -11.39093 -11.25152 -10.99176 -10.91971 -10.71458 -10.61187 -10.47101 -10.45212 -10.16967 -9.94426 -9.72828 -8.79879 -8.77140 -8.60191 -8.44251 -8.04332 -6.07234 -4.10748 1.08132 1.50556 1.55584 3.30394 3.36371 3.38278 3.44012 3.80226 3.91787 4.11149 4.44337 4.64643 4.80627 4.83864 4.87912 4.94612 5.07160 5.14728 5.18054 5.27720 5.34441 5.47227 5.52941 5.56137 5.65412 5.74253 5.75408 5.79491 5.81021 5.90583 6.05558 6.10051 6.13561 6.23238 6.30903 6.34572 6.55420 6.61000 6.64096 6.69981 6.74924 6.86366 7.16898 7.23351 7.42097 7.63202 7.90910 8.20384 8.92051 9.54638 11.01262 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.004836 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.707587 B = 5788.056960 C = 7216.726776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.119 3.881 3 N -0.989 5.989 4 C 0.259 3.741 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.780 3.220 14 O -0.958 6.958 15 O -0.996 6.996 16 N -0.977 5.977 17 C 0.161 3.839 18 C -0.105 4.105 19 C -0.101 4.101 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.109 4.109 24 C 0.085 3.915 25 C -0.185 4.185 26 C -0.195 4.195 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.150 0.850 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.135 0.865 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 2.221 -14.154 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.008 4.008 3 N -0.830 5.830 4 C 0.137 3.863 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.790 3.210 14 O -0.942 6.942 15 O -0.980 6.980 16 N -0.810 5.810 17 C 0.035 3.965 18 C -0.106 4.106 19 C -0.120 4.120 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.150 4.150 23 C -0.127 4.127 24 C -0.022 4.022 25 C -0.224 4.224 26 C -0.235 4.235 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.168 0.832 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.272 2.319 -14.372 17.260 hybrid contribution 0.466 -0.066 0.721 0.860 sum -8.806 2.253 -13.651 16.401 Atomic orbital electron populations 1.22455 0.97231 1.01509 1.02815 1.21117 0.93257 0.83162 1.03271 1.57770 1.80808 1.21391 1.23063 1.19019 0.97359 0.90913 0.79019 1.21519 1.02039 1.27535 1.05458 0.92194 1.24909 0.97300 0.94847 0.96861 1.69923 1.36021 1.30360 1.17193 0.86487 0.83963 0.78349 0.78925 1.19659 1.20822 1.20995 1.02063 0.73137 0.73052 0.72735 1.93570 1.59008 1.57447 1.84142 1.93497 1.83270 1.57751 1.63459 1.57985 1.42129 1.20220 1.60707 1.20165 1.01278 0.78797 0.96211 1.20270 0.94606 0.98310 0.97459 1.21752 0.95410 0.95621 0.99202 1.21220 0.99848 0.98087 0.95116 1.21146 0.94132 1.00136 0.98585 1.21048 0.95691 0.99023 0.99188 1.21138 0.99548 0.97481 0.94539 1.21435 0.85112 0.98956 0.96706 1.23468 1.01582 0.98248 0.99077 1.23468 1.00438 1.00263 0.99281 0.92177 0.91896 0.92478 0.90819 0.89930 0.94719 0.94759 0.92782 0.89826 0.88435 0.83226 0.86116 0.86535 0.86491 0.86029 0.84773 0.87807 0.88289 0.88160 0.88024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 10.24 37.15 0.38 -2.16 16 2 C 0.12 2.07 6.40 -4.05 -0.03 2.04 16 3 N -0.99 -20.16 2.83 -115.66 -0.33 -20.49 16 4 C 0.26 6.28 5.10 -5.19 -0.03 6.26 16 5 C -0.53 -14.51 9.38 -34.44 -0.32 -14.83 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -25.67 13.29 55.43 0.74 -24.93 16 9 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 S 2.78 55.17 6.02 -107.50 -0.65 54.52 16 14 O -0.96 -21.82 13.58 -57.17 -0.78 -22.59 16 15 O -1.00 -21.00 15.53 -57.17 -0.89 -21.88 16 16 N -0.98 -15.02 3.15 -108.58 -0.34 -15.36 16 17 C 0.16 2.31 4.96 -5.20 -0.03 2.29 16 18 C -0.10 -1.51 5.46 -104.62 -0.57 -2.08 16 19 C -0.10 -1.62 9.26 -39.58 -0.37 -1.98 16 20 C -0.12 -1.72 10.05 -39.58 -0.40 -2.11 16 21 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 22 C -0.13 -1.49 10.05 -39.58 -0.40 -1.88 16 23 C -0.11 -1.31 9.03 -39.59 -0.36 -1.67 16 24 C 0.09 1.08 5.94 -67.93 -0.40 0.68 16 25 C -0.19 -1.79 9.15 -26.69 -0.24 -2.03 16 26 C -0.20 -1.98 7.67 -26.69 -0.20 -2.19 16 27 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.06 0.80 4.25 -51.93 -0.22 0.58 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.24 6.92 -51.93 -0.36 0.88 16 31 H 0.08 1.49 8.11 -51.93 -0.42 1.06 16 32 H 0.03 0.89 7.30 -51.93 -0.38 0.51 16 33 H 0.03 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.08 0.98 6.29 -51.93 -0.33 0.65 16 36 H 0.10 1.57 7.34 -51.93 -0.38 1.19 16 37 H 0.15 2.74 5.95 -52.49 -0.31 2.43 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 41 H 0.12 1.18 5.54 -52.48 -0.29 0.89 16 42 H 0.13 1.76 7.47 -51.93 -0.39 1.37 16 43 H 0.10 0.96 3.70 -51.93 -0.19 0.77 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.10 1.09 7.91 -51.93 -0.41 0.68 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -32.14 375.18 -11.68 -43.82 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -6.61 Total: 4.45 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -3.46 Total: -19.86 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 0.07 Total: -60.78 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.66 Total: -44.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 55.17 SS G_CDS: -0.65 Total: 54.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.14 -11.68 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336915175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.508 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds