Wall clock time and date at job start Tue Mar 31 2020 21:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46497 * 109.47420 * 2 1 4 4 C 1.46502 * 119.99690 * 85.00479 * 3 2 1 5 5 C 1.50697 * 109.47482 * 85.00126 * 4 3 2 6 6 H 1.08002 * 119.99937 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00310 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00201 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00354 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47072 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47194 * 119.99617 * 9 7 5 12 12 H 1.48496 * 109.47666 * 240.00188 * 9 7 5 13 13 S 1.65598 * 120.00477 * 265.00529 * 3 2 1 14 14 O 1.42097 * 106.40489 * 203.54058 * 13 3 2 15 15 O 1.42104 * 106.40016 * 336.45565 * 13 3 2 16 16 N 1.65599 * 107.21807 * 89.99749 * 13 3 2 17 17 C 1.46494 * 120.00023 * 90.00602 * 16 13 3 18 18 C 1.50700 * 109.47537 * 93.29120 * 17 16 13 19 19 C 1.38238 * 119.99554 * 275.85039 * 18 17 16 20 20 C 1.38244 * 119.99482 * 179.76579 * 19 18 17 21 21 C 1.38230 * 119.99967 * 0.50784 * 20 19 18 22 22 C 1.38238 * 120.00011 * 359.74279 * 21 20 19 23 23 C 1.38230 * 120.00033 * 96.12404 * 18 17 16 24 24 C 1.46496 * 119.99791 * 270.00003 * 16 13 3 25 25 C 1.53001 * 117.49679 * 183.13858 * 24 16 13 26 26 C 1.53002 * 117.49935 * 114.47723 * 24 16 13 27 27 H 1.09012 * 109.47063 * 299.99742 * 1 2 3 28 28 H 1.08998 * 109.47597 * 59.99123 * 1 2 3 29 29 H 1.08998 * 109.47534 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47045 * 240.00004 * 2 1 3 31 31 H 1.09004 * 109.47292 * 120.00605 * 2 1 3 32 32 H 1.09000 * 109.47057 * 205.00439 * 4 3 2 33 33 H 1.09006 * 109.47220 * 324.99619 * 4 3 2 34 34 H 0.96999 * 120.00315 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47351 * 213.29437 * 17 16 13 36 36 H 1.09004 * 109.46997 * 333.28711 * 17 16 13 37 37 H 1.07999 * 120.00269 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.99791 * 180.23026 * 20 19 18 39 39 H 1.07996 * 120.00188 * 179.73010 * 21 20 19 40 40 H 1.08003 * 119.99874 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.00039 * 0.02562 * 23 18 17 42 42 H 1.08996 * 115.55569 * 328.80299 * 24 16 13 43 43 H 1.08998 * 117.49800 * 359.97438 * 25 24 16 44 44 H 1.08999 * 117.50182 * 145.02494 * 25 24 16 45 45 H 1.08995 * 117.50413 * 214.97769 * 26 24 16 46 46 H 1.09003 * 117.49598 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1085 1.2640 5 6 3.4948 1.7886 1.8823 6 1 4.1721 1.1109 1.3839 7 6 3.8527 2.3603 3.0849 8 7 3.0278 3.1852 3.6921 9 14 5.5090 1.9632 3.8517 10 1 6.2455 1.0163 2.9764 11 1 6.2973 3.2127 4.0020 12 1 5.3015 1.3453 5.1860 13 16 2.4121 2.1203 -1.4286 14 8 3.3284 3.1570 -1.1049 15 8 2.7095 1.0800 -2.3499 16 7 1.0430 2.8643 -1.9892 17 6 0.7517 4.2477 -1.6053 18 6 1.2997 5.1852 -2.6502 19 6 2.6256 5.5735 -2.6031 20 6 3.1296 6.4297 -3.5644 21 6 2.3051 6.9057 -4.5666 22 6 0.9780 6.5214 -4.6107 23 6 0.4753 5.6612 -3.6524 24 6 0.1233 2.1392 -2.8692 25 6 -1.0851 2.9042 -3.4127 26 6 -1.2771 1.8367 -2.3324 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0922 3.1801 1.0757 33 1 1.3618 1.8096 1.9454 34 1 3.2797 3.5877 4.5380 35 1 -0.3269 4.3832 -1.5255 36 1 1.2170 4.4635 -0.6435 37 1 3.2686 5.2054 -1.8173 38 1 4.1664 6.7301 -3.5298 39 1 2.6977 7.5780 -5.3151 40 1 0.3337 6.8937 -5.3935 41 1 -0.5618 5.3616 -3.6864 42 1 0.5836 1.3967 -3.5212 43 1 -1.1960 3.9469 -3.1151 44 1 -1.4201 2.6647 -4.4219 45 1 -1.7384 0.8955 -2.6314 46 1 -1.5140 2.1769 -1.3243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336915175.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:10 Heat of formation + Delta-G solvation = -33.785126 kcal Electronic energy + Delta-G solvation = -29037.776193 eV Core-core repulsion = 25247.580156 eV Total energy + Delta-G solvation = -3790.196037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.47227 -38.87452 -38.27639 -37.65764 -36.84804 -34.77187 -34.69824 -31.93773 -31.64942 -31.51570 -28.49889 -27.09916 -24.99211 -23.91880 -23.46492 -22.99718 -22.58805 -21.85440 -19.77939 -19.15714 -18.42155 -18.29185 -18.00181 -17.27355 -16.79074 -16.27130 -16.09248 -15.78916 -15.72254 -15.40708 -14.85972 -14.71600 -14.46805 -14.27026 -13.88204 -13.85435 -13.59359 -13.54596 -13.32609 -13.24201 -13.06539 -13.03977 -12.79496 -12.76069 -12.70817 -12.48594 -12.35769 -12.19186 -12.11579 -11.78525 -11.74461 -11.65622 -11.50298 -11.10245 -10.60653 -9.87607 -9.80649 -9.77707 -9.59077 -8.21672 -6.32875 -0.41098 0.45038 0.54009 1.35637 1.38298 1.49651 1.99059 2.37637 2.54000 2.88695 2.98408 3.09157 3.35293 3.71749 3.85991 3.89416 3.96398 4.05053 4.11185 4.21754 4.25719 4.36646 4.42910 4.48975 4.54509 4.58227 4.70123 4.77355 4.78890 4.89298 5.03006 5.07374 5.12263 5.14146 5.18589 5.23983 5.28609 5.34699 5.45535 5.48833 5.59953 5.63096 5.67774 5.71328 5.79933 5.99771 6.11093 6.16995 6.75074 7.35802 8.85802 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011898 B = 0.004836 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.707587 B = 5788.056960 C = 7216.726776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.109 3.891 3 N -0.995 5.995 4 C 0.278 3.722 5 C -0.547 4.547 6 H 0.047 0.953 7 C 0.016 3.984 8 N -0.922 5.922 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.269 1.269 13 S 2.788 3.212 14 O -0.997 6.997 15 O -1.012 7.012 16 N -0.966 5.966 17 C 0.161 3.839 18 C -0.118 4.118 19 C -0.137 4.137 20 C -0.140 4.140 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.104 4.104 24 C 0.046 3.954 25 C -0.159 4.159 26 C -0.184 4.184 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.015 0.985 33 H 0.027 0.973 34 H 0.267 0.733 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 2.447 -16.280 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.016 4.016 3 N -0.836 5.836 4 C 0.155 3.845 5 C -0.586 4.586 6 H 0.065 0.935 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.778 3.222 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.194 1.194 13 S 2.799 3.201 14 O -0.981 6.981 15 O -0.996 6.996 16 N -0.803 5.803 17 C 0.036 3.964 18 C -0.120 4.120 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.061 4.061 25 C -0.198 4.198 26 C -0.223 4.223 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.143 0.857 39 H 0.164 0.836 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.145 0.855 43 H 0.129 0.871 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.793 2.513 -16.498 20.434 hybrid contribution 1.207 -0.105 1.272 1.757 sum -10.586 2.408 -15.225 18.700 Atomic orbital electron populations 1.22378 0.94176 1.03459 1.02981 1.21345 0.95876 0.81517 1.02907 1.57688 1.81475 1.22566 1.21859 1.18527 0.95610 0.90136 0.80255 1.21829 1.03303 1.27491 1.05976 0.93469 1.25670 1.00633 0.94719 0.97354 1.70002 1.37548 1.30975 1.17634 0.85596 0.79912 0.78192 0.78549 1.19704 1.20485 1.19367 1.01536 0.73741 0.72389 0.72437 1.93531 1.61494 1.58452 1.84640 1.93458 1.84102 1.58480 1.63601 1.57491 1.41624 1.20424 1.60714 1.20232 1.02795 0.78218 0.95147 1.20294 0.94318 0.98889 0.98505 1.21628 0.96306 0.97940 0.99746 1.21383 1.00723 0.98180 0.95535 1.21511 0.94377 0.99807 0.98090 1.21527 0.95754 0.97670 0.99330 1.21444 1.00493 0.96875 0.93426 1.21693 0.85752 1.00688 0.97926 1.23606 0.97613 0.98336 1.00200 1.23545 0.97596 1.01658 0.99527 0.93158 0.90530 0.89588 0.90324 0.91143 0.96687 0.95543 0.92395 0.86530 0.91524 0.87117 0.85702 0.83574 0.82730 0.83029 0.85503 0.87122 0.85765 0.86074 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 10.24 71.98 0.74 -3.88 16 2 C 0.11 3.88 6.40 86.38 0.55 4.43 16 3 N -1.00 -42.47 2.83 -519.85 -1.47 -43.94 16 4 C 0.28 14.26 5.10 85.63 0.44 14.70 16 5 C -0.55 -31.50 9.38 25.60 0.24 -31.26 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 7 C 0.02 0.91 5.46 84.65 0.46 1.37 16 8 N -0.92 -54.26 13.29 21.45 0.28 -53.97 16 9 Si 0.95 45.38 29.54 68.60 2.03 47.41 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 S 2.79 116.36 6.02 -56.49 -0.34 116.02 16 14 O -1.00 -49.25 13.58 -128.00 -1.74 -50.99 16 15 O -1.01 -44.14 15.53 -128.00 -1.99 -46.13 16 16 N -0.97 -30.00 3.15 -497.43 -1.57 -31.57 16 17 C 0.16 4.71 4.96 85.63 0.42 5.13 16 18 C -0.12 -3.41 5.46 -19.87 -0.11 -3.52 16 19 C -0.14 -4.67 9.26 22.27 0.21 -4.46 16 20 C -0.14 -3.93 10.05 22.27 0.22 -3.71 16 21 C -0.12 -2.56 10.05 22.27 0.22 -2.34 16 22 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 23 C -0.10 -2.21 9.03 22.27 0.20 -2.00 16 24 C 0.05 1.08 5.94 44.99 0.27 1.34 16 25 C -0.16 -2.42 9.15 30.62 0.28 -2.14 16 26 C -0.18 -3.14 7.67 30.62 0.23 -2.91 16 27 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.08 1.83 4.25 -2.39 -0.01 1.82 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.69 6.92 -2.39 -0.02 2.67 16 31 H 0.07 2.63 8.11 -2.38 -0.02 2.61 16 32 H 0.02 0.83 7.30 -2.39 -0.02 0.81 16 33 H 0.03 1.38 8.11 -2.38 -0.02 1.36 16 34 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.12 2.54 6.29 -2.39 -0.02 2.53 16 36 H 0.07 2.35 7.34 -2.38 -0.02 2.33 16 37 H 0.11 4.58 5.95 -2.91 -0.02 4.56 16 38 H 0.12 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.15 2.22 5.54 -2.91 -0.02 2.20 16 42 H 0.13 3.18 7.47 -2.39 -0.02 3.16 16 43 H 0.11 1.54 3.70 -2.39 -0.01 1.53 16 44 H 0.12 1.34 8.14 -2.39 -0.02 1.33 16 45 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.10 1.80 7.91 -2.39 -0.02 1.79 16 Total: -1.00 -73.91 375.18 0.80 -73.11 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.99 Total: 21.44 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 4.61 Total: -31.39 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -2.75 Total: -129.48 kcal Atomic # 8 Polarization: -93.39 SS G_CDS: -3.73 Total: -97.11 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 116.36 SS G_CDS: -0.34 Total: 116.02 kcal Total: -73.91 0.80 -73.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336915175.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.325 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds