Wall clock time and date at job start Tue Mar 31 2020 21:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47506 * 2 1 4 4 C 1.46494 * 120.00098 * 294.39430 * 3 2 1 5 5 C 1.50702 * 109.47041 * 274.99579 * 4 3 2 6 6 H 1.07998 * 120.00148 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00030 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00051 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99949 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46901 * 60.00483 * 9 7 5 11 11 H 1.48497 * 109.47288 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47403 * 300.00341 * 9 7 5 13 13 S 1.65603 * 119.99839 * 114.38810 * 3 2 1 14 14 O 1.42098 * 106.40169 * 152.29755 * 13 3 2 15 15 O 1.42104 * 106.40175 * 19.37239 * 13 3 2 16 16 N 1.65603 * 107.21755 * 265.83848 * 13 3 2 17 17 C 1.46493 * 120.00559 * 72.82412 * 16 13 3 18 18 C 1.53000 * 109.47423 * 165.78926 * 17 16 13 19 19 C 1.50699 * 115.54808 * 280.94640 * 18 17 16 20 20 C 1.38232 * 120.00047 * 127.49648 * 19 18 17 21 21 C 1.38230 * 120.00217 * 179.74119 * 20 19 18 22 22 C 1.38238 * 119.99590 * 0.53390 * 21 20 19 23 23 C 1.38233 * 120.00259 * 359.74191 * 22 21 20 24 24 C 1.38233 * 119.99905 * 359.97438 * 23 22 21 25 25 C 1.53000 * 117.49937 * 135.23659 * 18 17 16 26 26 C 1.52999 * 60.00014 * 252.51223 * 25 18 17 27 27 H 1.08998 * 109.46937 * 301.05477 * 1 2 3 28 28 H 1.09002 * 109.46701 * 61.05087 * 1 2 3 29 29 H 1.09001 * 109.47231 * 181.04987 * 1 2 3 30 30 H 1.09004 * 109.46938 * 240.00310 * 2 1 3 31 31 H 1.08996 * 109.46773 * 120.00490 * 2 1 3 32 32 H 1.09002 * 109.47488 * 34.99494 * 4 3 2 33 33 H 1.09004 * 109.47112 * 154.99399 * 4 3 2 34 34 H 0.96998 * 119.99697 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99168 * 252.82243 * 16 13 3 36 36 H 1.08997 * 109.47035 * 45.78450 * 17 16 13 37 37 H 1.09007 * 109.46637 * 285.78794 * 17 16 13 38 38 H 1.08005 * 119.99786 * 359.97438 * 20 19 18 39 39 H 1.07998 * 120.00499 * 180.29662 * 21 20 19 40 40 H 1.08005 * 119.99833 * 179.76483 * 22 21 20 41 41 H 1.07997 * 119.99913 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.00153 * 179.97438 * 24 23 22 43 43 H 1.09008 * 117.49764 * 0.02562 * 25 18 17 44 44 H 1.08999 * 117.49485 * 145.01594 * 25 18 17 45 45 H 1.08998 * 117.49230 * 252.50974 * 26 25 18 46 46 H 1.09004 * 117.51641 * 107.48467 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7686 2.2464 -1.1554 5 6 2.8385 2.0209 -2.1925 6 1 3.6255 1.3043 -2.0095 7 6 2.8120 2.7285 -3.3755 8 7 1.8533 3.6008 -3.5987 9 14 4.1385 2.4494 -4.6608 10 1 4.1186 1.0286 -5.0922 11 1 3.8853 3.3264 -5.8321 12 1 5.4665 2.7717 -4.0796 13 16 2.8528 1.9643 1.3062 14 8 3.7126 2.9817 0.8115 15 8 3.3222 0.8298 2.0216 16 7 1.7559 2.7176 2.2920 17 6 0.8069 1.9221 3.0746 18 6 0.1616 2.8051 4.1446 19 6 1.0006 3.0593 5.3703 20 6 1.2209 4.3542 5.8008 21 6 1.9861 4.5871 6.9282 22 6 2.5402 3.5255 7.6187 23 6 2.3247 2.2308 7.1850 24 6 1.5546 1.9976 6.0609 25 6 -1.3523 2.6920 4.3352 26 6 -0.7557 3.9339 3.6699 27 1 -0.3633 0.5301 0.8804 28 1 -0.3633 0.4974 -0.8993 29 1 -0.3634 -1.0275 0.0188 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.7937 2.0107 -1.5820 33 1 1.7839 3.2893 -0.8384 34 1 1.8349 4.0989 -4.4308 35 1 1.7419 3.6858 2.3512 36 1 1.3332 1.0966 3.5538 37 1 0.0341 1.5265 2.4154 38 1 0.7920 5.1839 5.2584 39 1 2.1543 5.5986 7.2673 40 1 3.1413 3.7076 8.4974 41 1 2.7573 1.4014 7.7248 42 1 1.3865 0.9861 5.7218 43 1 -1.8885 1.9880 3.6986 44 1 -1.7416 2.8011 5.3474 45 1 -0.7527 4.8601 4.2445 46 1 -0.8993 4.0476 2.5953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336925742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:02 Heat of formation + Delta-G solvation = -29.439290 kcal Electronic energy + Delta-G solvation = -28011.385981 eV Core-core repulsion = 24221.378394 eV Total energy + Delta-G solvation = -3790.007587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03290 -37.57083 -36.58702 -36.05151 -35.12788 -33.89643 -32.62109 -31.07427 -30.69353 -29.87989 -26.70396 -26.48492 -23.26165 -23.24264 -23.07346 -21.98466 -21.47990 -19.71652 -18.73573 -17.55167 -17.12885 -16.69582 -16.33026 -16.02100 -15.40115 -15.19667 -14.81576 -14.76142 -14.36338 -14.26473 -13.67968 -13.59115 -13.39257 -13.09242 -12.89695 -12.79697 -12.49499 -12.05511 -11.93160 -11.73047 -11.65872 -11.61895 -11.39509 -11.29152 -11.25889 -10.98890 -10.95619 -10.84272 -10.62311 -10.55072 -10.31407 -10.27480 -9.97079 -9.73599 -9.26209 -9.02865 -8.73310 -8.41705 -8.04639 -6.04439 -4.07653 1.21170 1.27329 1.29111 3.34661 3.35511 3.38573 3.43725 3.63778 3.81568 4.18201 4.35266 4.46656 4.48135 4.63697 4.82658 4.88604 4.93965 4.99988 5.07270 5.28544 5.30167 5.32132 5.41817 5.48626 5.51140 5.63597 5.68184 5.74198 5.77552 5.79555 5.89923 5.93517 5.98522 6.01859 6.12056 6.34565 6.36848 6.39665 6.49773 6.62939 6.66282 6.87731 7.18035 7.30407 7.45968 7.66503 7.93619 8.23615 8.94265 9.57169 11.04135 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.003258 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.293900 B = 8592.254030 C = 8839.496775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.780 3.220 14 O -0.964 6.964 15 O -0.999 6.999 16 N -1.129 6.129 17 C 0.162 3.838 18 C -0.101 4.101 19 C -0.040 4.040 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.109 4.109 25 C -0.154 4.154 26 C -0.167 4.167 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.034 0.966 34 H 0.263 0.737 35 H 0.413 0.587 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.696 -1.783 19.979 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.834 5.834 4 C 0.137 3.863 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.788 3.212 14 O -0.948 6.948 15 O -0.983 6.983 16 N -0.887 5.887 17 C 0.035 3.965 18 C -0.103 4.103 19 C -0.040 4.040 20 C -0.134 4.134 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.191 4.191 26 C -0.204 4.204 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.807 -1.947 19.977 21.195 hybrid contribution 0.308 0.452 -0.873 1.030 sum -6.499 -1.494 19.105 20.235 Atomic orbital electron populations 1.22193 0.96882 1.01157 1.02382 1.21118 0.93755 0.83146 1.02875 1.57756 1.73931 1.19665 1.32068 1.18981 0.97397 0.88083 0.81808 1.21460 1.10891 1.23100 1.01164 0.92270 1.24918 0.95971 0.94884 0.98241 1.69908 1.32564 1.25425 1.25753 0.86588 0.82408 0.78048 0.80596 1.20205 1.21218 1.20006 1.01958 0.73620 0.73163 0.72486 1.93644 1.62555 1.59085 1.79479 1.93508 1.79185 1.52306 1.73284 1.56181 1.53739 1.18224 1.60578 1.20709 0.92022 0.92615 0.91142 1.20304 0.91228 1.03246 0.95480 1.18980 0.97418 0.93276 0.94358 1.21078 0.99195 0.96374 0.96800 1.21119 0.97944 0.99001 0.95727 1.21147 1.00207 0.92915 1.00167 1.21140 0.98633 0.96998 0.96868 1.21011 0.97435 0.98972 0.95249 1.23084 0.92722 1.00974 1.02365 1.23117 1.02296 0.93054 1.01900 0.93271 0.91526 0.92432 0.90709 0.90492 0.94523 0.94805 0.92706 0.75426 0.90120 0.91339 0.85871 0.86148 0.86273 0.86028 0.85831 0.88008 0.88479 0.88289 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.96 37.16 0.37 -1.99 16 2 C 0.12 2.02 6.58 -4.04 -0.03 1.99 16 3 N -0.99 -20.27 2.93 -115.66 -0.34 -20.61 16 4 C 0.26 6.39 4.99 -5.20 -0.03 6.37 16 5 C -0.53 -14.80 9.38 -34.44 -0.32 -15.13 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 S 2.78 55.46 6.17 -107.50 -0.66 54.79 16 14 O -0.96 -23.53 17.26 -57.17 -0.99 -24.51 16 15 O -1.00 -20.74 15.79 -57.17 -0.90 -21.64 16 16 N -1.13 -17.07 6.05 -10.62 -0.06 -17.13 16 17 C 0.16 2.00 6.03 -4.05 -0.02 1.98 16 18 C -0.10 -1.06 1.87 -155.66 -0.29 -1.35 16 19 C -0.04 -0.45 5.28 -104.62 -0.55 -1.00 16 20 C -0.12 -1.23 9.31 -39.59 -0.37 -1.59 16 21 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 22 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.11 -1.21 9.25 -39.58 -0.37 -1.57 16 25 C -0.15 -1.31 9.88 -26.73 -0.26 -1.57 16 26 C -0.17 -1.54 9.35 -26.73 -0.25 -1.79 16 27 H 0.05 0.61 6.15 -51.93 -0.32 0.29 16 28 H 0.07 1.05 6.93 -51.93 -0.36 0.69 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.22 6.74 -51.93 -0.35 0.87 16 32 H 0.04 0.91 6.76 -51.93 -0.35 0.56 16 33 H 0.03 0.89 7.73 -51.93 -0.40 0.49 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.41 5.81 8.52 -34.47 -0.29 5.52 16 36 H 0.08 1.03 6.57 -51.93 -0.34 0.69 16 37 H 0.07 0.77 5.97 -51.93 -0.31 0.46 16 38 H 0.12 1.12 6.34 -52.48 -0.33 0.79 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 1.25 7.43 -52.49 -0.39 0.86 16 43 H 0.10 0.78 8.09 -51.92 -0.42 0.36 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.82 6.49 -51.93 -0.34 0.48 16 46 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -34.08 386.41 -11.54 -45.62 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.71 Total: 4.85 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -3.41 Total: -18.79 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.33 Total: -63.10 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -1.89 Total: -46.15 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 55.46 SS G_CDS: -0.66 Total: 54.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.08 -11.54 -45.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336925742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.185 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds