Wall clock time and date at job start Tue Mar 31 2020 21:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47506 * 2 1 4 4 C 1.46494 * 120.00098 * 294.39430 * 3 2 1 5 5 C 1.50702 * 109.47041 * 274.99579 * 4 3 2 6 6 H 1.07998 * 120.00148 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00030 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00051 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99949 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46901 * 60.00483 * 9 7 5 11 11 H 1.48497 * 109.47288 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47403 * 300.00341 * 9 7 5 13 13 S 1.65603 * 119.99839 * 114.38810 * 3 2 1 14 14 O 1.42098 * 106.40169 * 152.29755 * 13 3 2 15 15 O 1.42104 * 106.40175 * 19.37239 * 13 3 2 16 16 N 1.65603 * 107.21755 * 265.83848 * 13 3 2 17 17 C 1.46493 * 120.00559 * 72.82412 * 16 13 3 18 18 C 1.53000 * 109.47423 * 165.78926 * 17 16 13 19 19 C 1.50699 * 115.54808 * 280.94640 * 18 17 16 20 20 C 1.38232 * 120.00047 * 127.49648 * 19 18 17 21 21 C 1.38230 * 120.00217 * 179.74119 * 20 19 18 22 22 C 1.38238 * 119.99590 * 0.53390 * 21 20 19 23 23 C 1.38233 * 120.00259 * 359.74191 * 22 21 20 24 24 C 1.38233 * 119.99905 * 359.97438 * 23 22 21 25 25 C 1.53000 * 117.49937 * 135.23659 * 18 17 16 26 26 C 1.52999 * 60.00014 * 252.51223 * 25 18 17 27 27 H 1.08998 * 109.46937 * 301.05477 * 1 2 3 28 28 H 1.09002 * 109.46701 * 61.05087 * 1 2 3 29 29 H 1.09001 * 109.47231 * 181.04987 * 1 2 3 30 30 H 1.09004 * 109.46938 * 240.00310 * 2 1 3 31 31 H 1.08996 * 109.46773 * 120.00490 * 2 1 3 32 32 H 1.09002 * 109.47488 * 34.99494 * 4 3 2 33 33 H 1.09004 * 109.47112 * 154.99399 * 4 3 2 34 34 H 0.96998 * 119.99697 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99168 * 252.82243 * 16 13 3 36 36 H 1.08997 * 109.47035 * 45.78450 * 17 16 13 37 37 H 1.09007 * 109.46637 * 285.78794 * 17 16 13 38 38 H 1.08005 * 119.99786 * 359.97438 * 20 19 18 39 39 H 1.07998 * 120.00499 * 180.29662 * 21 20 19 40 40 H 1.08005 * 119.99833 * 179.76483 * 22 21 20 41 41 H 1.07997 * 119.99913 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.00153 * 179.97438 * 24 23 22 43 43 H 1.09008 * 117.49764 * 0.02562 * 25 18 17 44 44 H 1.08999 * 117.49485 * 145.01594 * 25 18 17 45 45 H 1.08998 * 117.49230 * 252.50974 * 26 25 18 46 46 H 1.09004 * 117.51641 * 107.48467 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7686 2.2464 -1.1554 5 6 2.8385 2.0209 -2.1925 6 1 3.6255 1.3043 -2.0095 7 6 2.8120 2.7285 -3.3755 8 7 1.8533 3.6008 -3.5987 9 14 4.1385 2.4494 -4.6608 10 1 4.1186 1.0286 -5.0922 11 1 3.8853 3.3264 -5.8321 12 1 5.4665 2.7717 -4.0796 13 16 2.8528 1.9643 1.3062 14 8 3.7126 2.9817 0.8115 15 8 3.3222 0.8298 2.0216 16 7 1.7559 2.7176 2.2920 17 6 0.8069 1.9221 3.0746 18 6 0.1616 2.8051 4.1446 19 6 1.0006 3.0593 5.3703 20 6 1.2209 4.3542 5.8008 21 6 1.9861 4.5871 6.9282 22 6 2.5402 3.5255 7.6187 23 6 2.3247 2.2308 7.1850 24 6 1.5546 1.9976 6.0609 25 6 -1.3523 2.6920 4.3352 26 6 -0.7557 3.9339 3.6699 27 1 -0.3633 0.5301 0.8804 28 1 -0.3633 0.4974 -0.8993 29 1 -0.3634 -1.0275 0.0188 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.7937 2.0107 -1.5820 33 1 1.7839 3.2893 -0.8384 34 1 1.8349 4.0989 -4.4308 35 1 1.7419 3.6858 2.3512 36 1 1.3332 1.0966 3.5538 37 1 0.0341 1.5265 2.4154 38 1 0.7920 5.1839 5.2584 39 1 2.1543 5.5986 7.2673 40 1 3.1413 3.7076 8.4974 41 1 2.7573 1.4014 7.7248 42 1 1.3865 0.9861 5.7218 43 1 -1.8885 1.9880 3.6986 44 1 -1.7416 2.8011 5.3474 45 1 -0.7527 4.8601 4.2445 46 1 -0.8993 4.0476 2.5953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336925742.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:01 Heat of formation + Delta-G solvation = -51.331330 kcal Electronic energy + Delta-G solvation = -28012.335291 eV Core-core repulsion = 24221.378394 eV Total energy + Delta-G solvation = -3790.956897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.80334 -38.45791 -38.19559 -37.69693 -36.86123 -35.05080 -34.67933 -31.82488 -31.43800 -31.41364 -28.59762 -27.50971 -25.08193 -24.02180 -23.83918 -23.05014 -22.68804 -20.58830 -20.20060 -19.05762 -18.39799 -18.35119 -17.87432 -17.37384 -16.83385 -16.25991 -16.04156 -15.74730 -15.50600 -15.35635 -14.99659 -14.86418 -14.63980 -14.38500 -13.99189 -13.74673 -13.70561 -13.63185 -13.45411 -13.31199 -13.14856 -13.02058 -12.84390 -12.69401 -12.62757 -12.36870 -12.28376 -12.13763 -11.97781 -11.83393 -11.76213 -11.58700 -11.35939 -11.04855 -10.58408 -10.45983 -9.79541 -9.79103 -9.49577 -8.19461 -6.30223 -0.31367 0.45352 0.52502 1.38532 1.42148 1.49062 2.04915 2.40602 2.59439 2.79249 3.01140 3.11455 3.42824 3.59675 3.71458 3.84236 3.98974 4.08112 4.17124 4.19349 4.29758 4.37853 4.47832 4.53384 4.57921 4.65779 4.71892 4.79546 4.84839 4.90147 4.96072 5.05254 5.07483 5.17776 5.18141 5.19530 5.23827 5.30276 5.43942 5.58995 5.62084 5.64968 5.71964 5.73121 5.90167 6.11118 6.14366 6.18036 6.77283 7.37944 8.87702 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017373 B = 0.003258 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.293900 B = 8592.254030 C = 8839.496775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 N -0.996 5.996 4 C 0.276 3.724 5 C -0.549 4.549 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.923 5.923 9 Si 0.953 3.047 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.279 1.279 13 S 2.795 3.205 14 O -1.014 7.014 15 O -1.009 7.009 16 N -1.114 6.114 17 C 0.155 3.845 18 C -0.111 4.111 19 C -0.053 4.053 20 C -0.130 4.130 21 C -0.128 4.128 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.136 4.136 26 C -0.167 4.167 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.013 0.987 34 H 0.267 0.733 35 H 0.419 0.581 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 -2.282 20.999 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.837 5.837 4 C 0.152 3.848 5 C -0.589 4.589 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.562 5.562 9 Si 0.777 3.223 10 H -0.189 1.189 11 H -0.200 1.200 12 H -0.205 1.205 13 S 2.803 3.197 14 O -0.998 6.998 15 O -0.992 6.992 16 N -0.877 5.877 17 C 0.030 3.970 18 C -0.113 4.113 19 C -0.053 4.053 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.152 4.152 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.173 4.173 26 C -0.204 4.204 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.253 0.747 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.144 0.856 43 H 0.132 0.868 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.739 -2.472 21.004 22.520 hybrid contribution 0.576 0.588 -1.073 1.352 sum -7.163 -1.884 19.930 21.262 Atomic orbital electron populations 1.22125 0.94216 1.03197 1.02243 1.21382 0.96063 0.81289 1.02996 1.57630 1.74142 1.20691 1.31268 1.18526 0.96210 0.87686 0.82327 1.21822 1.11533 1.23045 1.02463 0.93315 1.25692 0.98013 0.94694 1.00194 1.69991 1.33853 1.25992 1.26410 0.85697 0.79390 0.78736 0.78433 1.18892 1.20045 1.20511 1.01247 0.73598 0.72388 0.72446 1.93570 1.65041 1.60603 1.80621 1.93487 1.79754 1.52716 1.73253 1.55757 1.53599 1.18606 1.59707 1.20959 0.91725 0.92669 0.91681 1.20187 0.92188 1.04065 0.94854 1.19132 0.97842 0.93613 0.94720 1.21308 0.99611 0.96541 0.97350 1.21440 0.97489 1.00130 0.95487 1.21470 1.00198 0.92708 1.00817 1.21432 0.98492 0.97955 0.96821 1.21212 0.98199 0.99287 0.95944 1.23173 0.90856 1.00299 1.02996 1.23171 1.01785 0.93631 1.01843 0.91438 0.93504 0.89371 0.92017 0.88956 0.94822 0.96883 0.92412 0.74657 0.90425 0.89831 0.84915 0.84268 0.84211 0.84485 0.85557 0.86816 0.87543 0.87336 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 9.96 71.98 0.72 -3.48 16 2 C 0.11 3.63 6.58 86.38 0.57 4.20 16 3 N -1.00 -40.95 2.93 -519.85 -1.52 -42.47 16 4 C 0.28 13.90 4.99 85.63 0.43 14.33 16 5 C -0.55 -31.44 9.38 25.60 0.24 -31.20 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.77 5.46 84.65 0.46 1.24 16 8 N -0.92 -54.09 13.29 21.45 0.28 -53.81 16 9 Si 0.95 45.12 29.54 68.60 2.03 47.14 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 13 S 2.79 112.46 6.17 -56.49 -0.35 112.11 16 14 O -1.01 -50.93 17.26 -128.00 -2.21 -53.14 16 15 O -1.01 -41.63 15.79 -128.00 -2.02 -43.65 16 16 N -1.11 -33.27 6.05 -187.50 -1.13 -34.41 16 17 C 0.15 3.63 6.03 86.38 0.52 4.15 16 18 C -0.11 -2.15 1.87 -52.93 -0.10 -2.25 16 19 C -0.05 -1.13 5.28 -19.87 -0.10 -1.23 16 20 C -0.13 -2.58 9.31 22.27 0.21 -2.38 16 21 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 22 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 23 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 24 C -0.13 -2.74 9.25 22.27 0.21 -2.54 16 25 C -0.14 -1.97 9.88 30.59 0.30 -1.67 16 26 C -0.17 -2.80 9.35 30.59 0.29 -2.51 16 27 H 0.07 1.51 6.15 -2.39 -0.01 1.50 16 28 H 0.05 1.43 6.93 -2.39 -0.02 1.41 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 2.81 6.74 -2.39 -0.02 2.79 16 32 H 0.03 1.71 6.76 -2.39 -0.02 1.69 16 33 H 0.01 0.71 7.73 -2.38 -0.02 0.69 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.42 11.74 8.52 -96.74 -0.82 10.92 16 36 H 0.08 1.89 6.57 -2.39 -0.02 1.87 16 37 H 0.08 1.70 5.97 -2.38 -0.01 1.69 16 38 H 0.13 2.24 6.34 -2.91 -0.02 2.23 16 39 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.13 2.48 7.43 -2.91 -0.02 2.46 16 43 H 0.11 1.39 8.09 -2.38 -0.02 1.37 16 44 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.11 1.59 6.49 -2.39 -0.02 1.58 16 46 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -73.58 386.41 -0.35 -73.93 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.17 Total: 24.14 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 4.40 Total: -29.84 kcal Atomic # 7 Polarization: -128.32 SS G_CDS: -2.37 Total: -130.69 kcal Atomic # 8 Polarization: -92.56 SS G_CDS: -4.23 Total: -96.79 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 112.46 SS G_CDS: -0.35 Total: 112.11 kcal Total: -73.58 -0.35 -73.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336925742.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.603 kcal (2) G-P(sol) polarization free energy of solvation -73.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds