Wall clock time and date at job start Tue Mar 31 2020 21:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47653 * 2 1 4 4 C 1.46507 * 119.99782 * 281.33227 * 3 2 1 5 5 C 1.50700 * 109.46785 * 277.79071 * 4 3 2 6 6 H 1.08006 * 120.00096 * 0.93703 * 5 4 3 7 7 C 1.37876 * 120.00084 * 180.93269 * 5 4 3 8 8 N 1.31514 * 119.99686 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46799 * 90.00417 * 9 7 5 11 11 H 1.48498 * 109.47026 * 209.99914 * 9 7 5 12 12 H 1.48494 * 109.47083 * 330.00454 * 9 7 5 13 13 S 1.65602 * 120.00217 * 101.32457 * 3 2 1 14 14 O 1.42097 * 106.40239 * 333.12811 * 13 3 2 15 15 O 1.42095 * 106.40078 * 200.20380 * 13 3 2 16 16 N 1.65603 * 107.21445 * 86.66718 * 13 3 2 17 17 C 1.46504 * 119.99829 * 291.77318 * 16 13 3 18 18 C 1.52994 * 110.72872 * 310.83739 * 17 16 13 19 19 C 1.54343 * 110.81863 * 74.46324 * 17 16 13 20 20 C 1.51378 * 105.17082 * 144.57029 * 19 17 16 21 21 C 1.38491 * 130.39453 * 162.81184 * 20 19 17 22 22 C 1.38103 * 120.21422 * 180.25536 * 21 20 19 23 23 C 1.38252 * 119.93608 * 359.48136 * 22 21 20 24 24 C 1.38110 * 119.93346 * 0.51234 * 23 22 21 25 25 C 1.38215 * 109.75401 * 342.81240 * 20 19 17 26 26 C 1.51367 * 109.76098 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.46503 * 299.99968 * 1 2 3 28 28 H 1.09000 * 109.46577 * 60.00018 * 1 2 3 29 29 H 1.08993 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46793 * 239.99600 * 2 1 3 31 31 H 1.09008 * 109.46776 * 120.00249 * 2 1 3 32 32 H 1.08997 * 109.46917 * 37.79235 * 4 3 2 33 33 H 1.08996 * 109.46897 * 157.79168 * 4 3 2 34 34 H 0.97001 * 120.00018 * 179.97438 * 8 7 5 35 35 H 0.96999 * 119.99951 * 111.77582 * 16 13 3 36 36 H 1.08997 * 109.47852 * 306.72980 * 18 17 16 37 37 H 1.09007 * 109.47296 * 66.73559 * 18 17 16 38 38 H 1.09006 * 109.46915 * 186.73245 * 18 17 16 39 39 H 1.08996 * 110.30645 * 25.64491 * 19 17 16 40 40 H 1.09003 * 110.30567 * 263.49304 * 19 17 16 41 41 H 1.07998 * 119.89230 * 359.97438 * 21 20 19 42 42 H 1.08005 * 120.03086 * 179.74505 * 22 21 20 43 43 H 1.07997 * 120.03454 * 180.24580 * 23 22 21 44 44 H 1.07992 * 119.89205 * 179.73076 * 24 23 22 45 45 H 1.08998 * 110.30538 * 136.11769 * 26 25 20 46 46 H 1.09006 * 110.30041 * 258.26748 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.0277 2.1548 -1.2441 5 6 3.2587 1.8089 -2.0416 6 1 3.9560 1.0740 -1.6671 7 6 3.4948 2.4305 -3.2495 8 7 2.6454 3.3249 -3.7058 9 14 5.0210 2.0022 -4.2377 10 1 4.7151 0.8780 -5.1586 11 1 5.4484 3.1857 -5.0262 12 1 6.1127 1.6023 -3.3139 13 16 2.5601 2.0679 1.4062 14 8 1.8832 1.4032 2.4641 15 8 2.5071 3.4745 1.2121 16 7 4.1622 1.6768 1.5574 17 6 4.5566 0.2885 1.8093 18 6 3.7453 -0.3040 2.9632 19 6 4.4064 -0.5649 0.5321 20 6 5.5515 -1.5538 0.5794 21 6 5.7419 -2.7401 -0.1094 22 6 6.8808 -3.4919 0.1029 23 6 7.8395 -3.0543 0.9978 24 6 7.6514 -1.8715 1.6856 25 6 6.5073 -1.1190 1.4782 26 6 6.0703 0.1920 2.0958 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.1381 1.9161 -1.8269 33 1 2.0337 3.2193 -1.0098 34 1 2.8117 3.7625 -4.5553 35 1 4.8393 2.3669 1.4791 36 1 3.8230 0.3469 3.8340 37 1 2.7001 -0.3901 2.6659 38 1 4.1348 -1.2913 3.2117 39 1 4.4861 0.0640 -0.3546 40 1 3.4518 -1.0910 0.5389 41 1 4.9953 -3.0806 -0.8115 42 1 7.0243 -4.4186 -0.4329 43 1 8.7325 -3.6390 1.1621 44 1 8.3987 -1.5326 2.3877 45 1 6.2516 0.1828 3.1706 46 1 6.5980 1.0241 1.6296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336936453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:54 Heat of formation + Delta-G solvation = -48.716937 kcal Electronic energy + Delta-G solvation = -29356.179360 eV Core-core repulsion = 25565.335832 eV Total energy + Delta-G solvation = -3790.843529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37313 -37.36084 -36.45571 -36.05847 -35.22378 -32.72778 -32.58134 -31.39808 -29.94477 -29.17401 -27.41083 -26.66083 -26.27839 -23.25712 -21.96179 -21.63373 -20.99054 -20.24689 -18.50459 -17.09838 -17.07859 -16.45821 -16.20978 -16.01713 -15.29616 -15.14375 -14.87961 -14.43606 -13.92456 -13.62801 -13.54434 -13.41937 -13.07319 -13.05419 -12.71834 -12.66988 -12.55238 -12.16134 -12.02906 -11.87870 -11.66179 -11.42176 -11.30546 -11.28761 -11.18820 -11.16982 -11.00436 -10.91834 -10.73822 -10.50813 -10.41150 -10.30087 -10.00321 -9.71413 -9.23572 -8.76556 -8.50231 -8.43946 -8.02997 -6.11851 -4.18220 1.29841 1.38785 1.42925 3.23625 3.31543 3.32890 3.47286 3.78911 4.09808 4.32824 4.35478 4.67164 4.92943 4.94481 5.00273 5.04035 5.08633 5.19029 5.22896 5.35454 5.47683 5.54333 5.59913 5.70188 5.75071 5.76880 5.84781 5.91214 5.97093 6.02985 6.08257 6.16678 6.28474 6.35160 6.40593 6.44944 6.52231 6.61183 6.66124 6.69258 6.71845 7.03363 7.22430 7.41192 7.48674 7.67551 7.87058 8.15193 8.86966 9.47877 10.96132 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.006019 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.821977 B = 4650.735959 C = 6318.689105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.989 5.989 4 C 0.246 3.754 5 C -0.539 4.539 6 H 0.066 0.934 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.784 3.216 14 O -0.994 6.994 15 O -0.981 6.981 16 N -1.115 6.115 17 C 0.183 3.817 18 C -0.167 4.167 19 C -0.123 4.123 20 C -0.077 4.077 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.107 4.107 25 C -0.097 4.097 26 C -0.076 4.076 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.414 0.586 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.081 0.919 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 -11.739 10.288 16.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.831 5.831 4 C 0.124 3.876 5 C -0.578 4.578 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.793 3.207 14 O -0.978 6.978 15 O -0.965 6.965 16 N -0.872 5.872 17 C 0.093 3.907 18 C -0.225 4.225 19 C -0.160 4.160 20 C -0.077 4.077 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.125 4.125 25 C -0.098 4.098 26 C -0.114 4.114 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.248 0.752 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.099 0.901 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.400 -11.184 10.766 16.436 hybrid contribution 1.548 -0.143 -1.222 1.978 sum 6.948 -11.327 9.544 16.361 Atomic orbital electron populations 1.22178 0.96816 1.01270 1.02521 1.21251 0.94011 0.83237 1.01859 1.57674 1.76635 1.22246 1.26562 1.19185 0.97753 0.91410 0.79280 1.21592 1.07776 1.23761 1.04648 0.91653 1.24937 0.96563 0.94828 0.97493 1.69931 1.35988 1.26259 1.20512 0.86626 0.83335 0.77956 0.80278 1.20642 1.21170 1.19798 1.01758 0.72850 0.72908 0.73191 1.93541 1.73355 1.76256 1.54639 1.93590 1.86131 1.30275 1.86481 1.56056 1.27808 1.14304 1.89010 1.20591 0.94773 0.80955 0.94349 1.22523 1.01745 1.00715 0.97511 1.22261 0.97160 0.96524 1.00100 1.20558 0.96555 0.94726 0.95876 1.20672 0.98078 0.94166 0.99653 1.21006 0.94225 0.99813 0.98806 1.20961 0.99285 0.96653 0.97653 1.20557 0.96714 0.94920 1.00320 1.20471 0.94906 0.96290 0.98088 1.21270 0.94125 0.94947 1.01053 0.92687 0.91908 0.92473 0.90374 0.91399 0.94448 0.93038 0.92623 0.75187 0.91452 0.89077 0.91739 0.86523 0.89371 0.86057 0.86138 0.86238 0.86506 0.90078 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.15 37.16 0.38 -2.19 16 2 C 0.12 2.01 4.09 -4.04 -0.02 1.99 16 3 N -0.99 -19.32 2.50 -115.65 -0.29 -19.61 16 4 C 0.25 5.89 5.41 -5.19 -0.03 5.86 16 5 C -0.54 -13.59 9.36 -34.44 -0.32 -13.91 16 6 H 0.07 1.56 5.32 -52.48 -0.28 1.28 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 9 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 S 2.78 53.10 5.99 -107.50 -0.64 52.45 16 14 O -0.99 -18.83 13.54 -57.17 -0.77 -19.60 16 15 O -0.98 -22.53 16.61 -57.17 -0.95 -23.48 16 16 N -1.11 -17.57 5.62 1.68 0.01 -17.56 16 17 C 0.18 2.55 1.07 -130.41 -0.14 2.41 16 18 C -0.17 -2.23 7.29 37.15 0.27 -1.96 16 19 C -0.12 -1.81 4.46 -26.85 -0.12 -1.93 16 20 C -0.08 -1.06 6.14 -104.20 -0.64 -1.70 16 21 C -0.11 -1.37 10.04 -39.54 -0.40 -1.77 16 22 C -0.12 -1.34 10.05 -39.63 -0.40 -1.74 16 23 C -0.13 -1.36 10.05 -39.62 -0.40 -1.76 16 24 C -0.11 -1.22 10.04 -39.53 -0.40 -1.62 16 25 C -0.10 -1.25 6.14 -104.21 -0.64 -1.89 16 26 C -0.08 -0.92 5.98 -26.84 -0.16 -1.08 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 1.01 7.61 -51.93 -0.40 0.62 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 31 H 0.07 0.99 4.13 -51.92 -0.21 0.77 16 32 H 0.04 0.94 7.57 -51.93 -0.39 0.54 16 33 H 0.05 1.39 6.83 -51.93 -0.35 1.03 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.41 5.98 8.45 -34.47 -0.29 5.69 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.33 4.37 -51.92 -0.23 1.10 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.12 2.03 5.59 -51.93 -0.29 1.74 16 40 H 0.09 1.21 4.76 -51.93 -0.25 0.96 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.08 0.84 7.91 -51.93 -0.41 0.43 16 46 H 0.09 1.05 7.79 -51.93 -0.40 0.65 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -31.10 365.61 -10.97 -42.07 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.44 Total: 8.68 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -3.11 Total: -19.64 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.46 Total: -61.56 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.72 Total: -43.09 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 53.10 SS G_CDS: -0.64 Total: 52.45 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.10 -10.97 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336936453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.648 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds