Wall clock time and date at job start Tue Mar 31 2020 21:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46494 * 109.47653 * 2 1 4 4 C 1.46507 * 119.99782 * 281.33227 * 3 2 1 5 5 C 1.50700 * 109.46785 * 277.79071 * 4 3 2 6 6 H 1.08006 * 120.00096 * 0.93703 * 5 4 3 7 7 C 1.37876 * 120.00084 * 180.93269 * 5 4 3 8 8 N 1.31514 * 119.99686 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46799 * 90.00417 * 9 7 5 11 11 H 1.48498 * 109.47026 * 209.99914 * 9 7 5 12 12 H 1.48494 * 109.47083 * 330.00454 * 9 7 5 13 13 S 1.65602 * 120.00217 * 101.32457 * 3 2 1 14 14 O 1.42097 * 106.40239 * 333.12811 * 13 3 2 15 15 O 1.42095 * 106.40078 * 200.20380 * 13 3 2 16 16 N 1.65603 * 107.21445 * 86.66718 * 13 3 2 17 17 C 1.46504 * 119.99829 * 291.77318 * 16 13 3 18 18 C 1.52994 * 110.72872 * 310.83739 * 17 16 13 19 19 C 1.54343 * 110.81863 * 74.46324 * 17 16 13 20 20 C 1.51378 * 105.17082 * 144.57029 * 19 17 16 21 21 C 1.38491 * 130.39453 * 162.81184 * 20 19 17 22 22 C 1.38103 * 120.21422 * 180.25536 * 21 20 19 23 23 C 1.38252 * 119.93608 * 359.48136 * 22 21 20 24 24 C 1.38110 * 119.93346 * 0.51234 * 23 22 21 25 25 C 1.38215 * 109.75401 * 342.81240 * 20 19 17 26 26 C 1.51367 * 109.76098 * 359.97438 * 25 20 19 27 27 H 1.09000 * 109.46503 * 299.99968 * 1 2 3 28 28 H 1.09000 * 109.46577 * 60.00018 * 1 2 3 29 29 H 1.08993 * 109.47028 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46793 * 239.99600 * 2 1 3 31 31 H 1.09008 * 109.46776 * 120.00249 * 2 1 3 32 32 H 1.08997 * 109.46917 * 37.79235 * 4 3 2 33 33 H 1.08996 * 109.46897 * 157.79168 * 4 3 2 34 34 H 0.97001 * 120.00018 * 179.97438 * 8 7 5 35 35 H 0.96999 * 119.99951 * 111.77582 * 16 13 3 36 36 H 1.08997 * 109.47852 * 306.72980 * 18 17 16 37 37 H 1.09007 * 109.47296 * 66.73559 * 18 17 16 38 38 H 1.09006 * 109.46915 * 186.73245 * 18 17 16 39 39 H 1.08996 * 110.30645 * 25.64491 * 19 17 16 40 40 H 1.09003 * 110.30567 * 263.49304 * 19 17 16 41 41 H 1.07998 * 119.89230 * 359.97438 * 21 20 19 42 42 H 1.08005 * 120.03086 * 179.74505 * 22 21 20 43 43 H 1.07997 * 120.03454 * 180.24580 * 23 22 21 44 44 H 1.07992 * 119.89205 * 179.73076 * 24 23 22 45 45 H 1.08998 * 110.30538 * 136.11769 * 26 25 20 46 46 H 1.09006 * 110.30041 * 258.26748 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.0277 2.1548 -1.2441 5 6 3.2587 1.8089 -2.0416 6 1 3.9560 1.0740 -1.6671 7 6 3.4948 2.4305 -3.2495 8 7 2.6454 3.3249 -3.7058 9 14 5.0210 2.0022 -4.2377 10 1 4.7151 0.8780 -5.1586 11 1 5.4484 3.1857 -5.0262 12 1 6.1127 1.6023 -3.3139 13 16 2.5601 2.0679 1.4062 14 8 1.8832 1.4032 2.4641 15 8 2.5071 3.4745 1.2121 16 7 4.1622 1.6768 1.5574 17 6 4.5566 0.2885 1.8093 18 6 3.7453 -0.3040 2.9632 19 6 4.4064 -0.5649 0.5321 20 6 5.5515 -1.5538 0.5794 21 6 5.7419 -2.7401 -0.1094 22 6 6.8808 -3.4919 0.1029 23 6 7.8395 -3.0543 0.9978 24 6 7.6514 -1.8715 1.6856 25 6 6.5073 -1.1190 1.4782 26 6 6.0703 0.1920 2.0958 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.1381 1.9161 -1.8269 33 1 2.0337 3.2193 -1.0098 34 1 2.8117 3.7625 -4.5553 35 1 4.8393 2.3669 1.4791 36 1 3.8230 0.3469 3.8340 37 1 2.7001 -0.3901 2.6659 38 1 4.1348 -1.2913 3.2117 39 1 4.4861 0.0640 -0.3546 40 1 3.4518 -1.0910 0.5389 41 1 4.9953 -3.0806 -0.8115 42 1 7.0243 -4.4186 -0.4329 43 1 8.7325 -3.6390 1.1621 44 1 8.3987 -1.5326 2.3877 45 1 6.2516 0.1828 3.1706 46 1 6.5980 1.0241 1.6296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336936453.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:53 Heat of formation + Delta-G solvation = -68.129216 kcal Electronic energy + Delta-G solvation = -29357.021140 eV Core-core repulsion = 25565.335832 eV Total energy + Delta-G solvation = -3791.685308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.35144 -38.60851 -37.91745 -37.58385 -36.86029 -34.67740 -33.69938 -32.30310 -31.49817 -30.28009 -28.52102 -28.37871 -27.26923 -24.98187 -23.25889 -22.84314 -21.92944 -21.39956 -19.95003 -18.68557 -18.59063 -18.28572 -17.40123 -17.19245 -16.73143 -16.20632 -16.12163 -15.82451 -15.42982 -14.89320 -14.76562 -14.66772 -14.51048 -14.16760 -13.88012 -13.75093 -13.70335 -13.63683 -13.55709 -13.34085 -13.17961 -13.05496 -12.72909 -12.71143 -12.66408 -12.44521 -12.34188 -12.29776 -12.01776 -11.99996 -11.71902 -11.63676 -11.49011 -11.38870 -10.59904 -10.47446 -9.75767 -9.63834 -9.33936 -8.15691 -6.27917 -0.23869 0.49972 0.54342 1.40125 1.41940 1.50917 1.99853 2.41625 2.61727 2.90260 3.16491 3.30063 3.44346 3.67249 3.89995 3.94104 4.06711 4.09397 4.22112 4.31576 4.32809 4.44768 4.51432 4.65274 4.67565 4.74811 4.78123 4.83211 4.91715 4.94841 4.99204 5.04460 5.16362 5.21962 5.23727 5.28806 5.33502 5.45779 5.48634 5.57411 5.61811 5.67455 5.79326 5.82585 5.92267 6.14398 6.17598 6.20194 6.86554 7.41889 8.92569 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.006019 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.821977 B = 4650.735959 C = 6318.689105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.992 5.992 4 C 0.262 3.738 5 C -0.536 4.536 6 H 0.079 0.921 7 C 0.011 3.989 8 N -0.929 5.929 9 Si 0.953 3.047 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.265 1.265 13 S 2.796 3.204 14 O -0.992 6.992 15 O -1.023 7.023 16 N -1.107 6.107 17 C 0.178 3.822 18 C -0.164 4.164 19 C -0.120 4.120 20 C -0.101 4.101 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.111 4.111 25 C -0.107 4.107 26 C -0.071 4.071 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.021 0.979 33 H 0.016 0.984 34 H 0.264 0.736 35 H 0.420 0.580 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.102 0.898 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.365 -14.348 11.326 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.138 3.862 5 C -0.575 4.575 6 H 0.097 0.903 7 C -0.188 4.188 8 N -0.569 5.569 9 Si 0.778 3.222 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.189 1.189 13 S 2.805 3.195 14 O -0.976 6.976 15 O -1.008 7.008 16 N -0.867 5.867 17 C 0.089 3.911 18 C -0.223 4.223 19 C -0.158 4.158 20 C -0.101 4.101 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.129 4.129 25 C -0.108 4.108 26 C -0.110 4.110 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.039 0.961 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.256 0.744 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.157 0.843 45 H 0.121 0.879 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.646 -13.819 11.822 19.728 hybrid contribution 0.869 0.570 -1.473 1.802 sum 8.515 -13.250 10.349 18.846 Atomic orbital electron populations 1.22174 0.95895 1.03114 1.01439 1.21503 0.94866 0.81589 1.02960 1.57546 1.77449 1.23255 1.25013 1.18686 0.96837 0.90031 0.80620 1.21953 1.07991 1.23200 1.04381 0.90317 1.25753 0.99327 0.94883 0.98834 1.70066 1.37998 1.27769 1.21062 0.85634 0.80058 0.77586 0.78881 1.19883 1.21484 1.18923 1.01253 0.73509 0.71781 0.72942 1.93545 1.73971 1.75851 1.54197 1.93530 1.87059 1.33214 1.86990 1.55799 1.26590 1.15675 1.88657 1.20797 0.96459 0.79409 0.94420 1.22493 1.00806 1.01812 0.97142 1.22126 0.98145 0.96569 0.98977 1.20572 0.96746 0.95410 0.97419 1.20887 0.99071 0.94248 0.99919 1.21333 0.93588 1.00393 0.98835 1.21362 0.99934 0.96456 0.96599 1.20877 0.96545 0.94899 1.00612 1.20605 0.95436 0.96570 0.98192 1.21248 0.92306 0.94958 1.02438 0.93217 0.93512 0.89179 0.90306 0.89202 0.96125 0.96568 0.92736 0.74430 0.91203 0.90439 0.89791 0.89575 0.89075 0.85712 0.83863 0.83425 0.84281 0.87935 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 10.15 71.98 0.73 -4.28 16 2 C 0.12 3.76 4.09 86.38 0.35 4.11 16 3 N -0.99 -39.57 2.50 -519.82 -1.30 -40.87 16 4 C 0.26 13.08 5.41 85.63 0.46 13.54 16 5 C -0.54 -27.54 9.36 25.60 0.24 -27.30 16 6 H 0.08 3.78 5.32 -2.91 -0.02 3.76 16 7 C 0.01 0.61 5.46 84.65 0.46 1.07 16 8 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16 9 Si 0.95 42.49 29.54 68.60 2.03 44.52 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 13 S 2.80 108.09 5.99 -56.49 -0.34 107.75 16 14 O -0.99 -37.19 13.54 -128.00 -1.73 -38.92 16 15 O -1.02 -48.71 16.61 -128.00 -2.13 -50.84 16 16 N -1.11 -34.53 5.62 -148.60 -0.84 -35.36 16 17 C 0.18 4.72 1.07 4.52 0.00 4.73 16 18 C -0.16 -4.08 7.29 71.98 0.52 -3.55 16 19 C -0.12 -3.43 4.46 30.52 0.14 -3.30 16 20 C -0.10 -2.64 6.14 -19.59 -0.12 -2.76 16 21 C -0.12 -2.90 10.04 22.30 0.22 -2.68 16 22 C -0.12 -2.38 10.05 22.24 0.22 -2.15 16 23 C -0.13 -2.21 10.05 22.24 0.22 -1.99 16 24 C -0.11 -2.15 10.04 22.30 0.22 -1.93 16 25 C -0.11 -2.51 6.14 -19.60 -0.12 -2.63 16 26 C -0.07 -1.58 5.98 30.52 0.18 -1.39 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.05 1.53 7.61 -2.39 -0.02 1.52 16 29 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 31 H 0.09 2.52 4.13 -2.38 -0.01 2.51 16 32 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 33 H 0.02 0.93 6.83 -2.39 -0.02 0.91 16 34 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.42 12.07 8.45 -96.75 -0.82 11.25 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 2.14 4.37 -2.38 -0.01 2.13 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.09 2.99 5.59 -2.39 -0.01 2.97 16 40 H 0.09 2.43 4.76 -2.39 -0.01 2.42 16 41 H 0.12 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 43 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.10 1.81 7.91 -2.39 -0.02 1.79 16 46 H 0.09 1.96 7.79 -2.38 -0.02 1.94 16 Total: -1.00 -67.93 365.61 -0.08 -68.01 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: 0.19 Total: 29.95 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 3.75 Total: -30.50 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -1.85 Total: -129.98 kcal Atomic # 8 Polarization: -85.90 SS G_CDS: -3.86 Total: -89.76 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 108.09 SS G_CDS: -0.34 Total: 107.75 kcal Total: -67.93 -0.08 -68.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336936453.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.119 kcal (2) G-P(sol) polarization free energy of solvation -67.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds