Wall clock time and date at job start Tue Mar 31 2020 21:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47400 * 2 1 4 4 C 1.46495 * 119.99926 * 275.51212 * 3 2 1 5 5 C 1.50699 * 109.47138 * 293.63697 * 4 3 2 6 6 H 1.08001 * 120.00269 * 4.51432 * 5 4 3 7 7 C 1.37879 * 120.00091 * 184.52128 * 5 4 3 8 8 N 1.31513 * 119.99835 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99805 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47104 * 90.00848 * 9 7 5 11 11 H 1.48504 * 109.46830 * 210.00369 * 9 7 5 12 12 H 1.48499 * 109.47295 * 330.00302 * 9 7 5 13 13 S 1.65597 * 119.99739 * 95.50339 * 3 2 1 14 14 O 1.42096 * 106.40589 * 325.56906 * 13 3 2 15 15 O 1.42102 * 106.40144 * 192.64386 * 13 3 2 16 16 N 1.65607 * 107.21493 * 79.10752 * 13 3 2 17 17 C 1.46490 * 119.99984 * 78.03801 * 16 13 3 18 18 C 1.53002 * 115.55090 * 202.81776 * 17 16 13 19 19 C 1.50698 * 109.46974 * 62.92228 * 18 17 16 20 20 C 1.38240 * 119.99762 * 272.21157 * 19 18 17 21 21 C 1.38238 * 119.99830 * 179.78842 * 20 19 18 22 22 C 1.38237 * 119.99842 * 0.44466 * 21 20 19 23 23 C 1.38238 * 120.00046 * 359.81256 * 22 21 20 24 24 C 1.38230 * 119.99874 * 359.97438 * 23 22 21 25 25 C 1.53001 * 117.50266 * 348.48565 * 17 16 13 26 26 C 1.53006 * 117.50074 * 57.14674 * 17 16 13 27 27 H 1.08995 * 109.47314 * 185.04109 * 1 2 3 28 28 H 1.09004 * 109.46896 * 305.04196 * 1 2 3 29 29 H 1.09000 * 109.47195 * 65.03533 * 1 2 3 30 30 H 1.09002 * 109.47312 * 240.00742 * 2 1 3 31 31 H 1.08992 * 109.47255 * 120.00293 * 2 1 3 32 32 H 1.09000 * 109.47861 * 53.63787 * 4 3 2 33 33 H 1.09003 * 109.47219 * 173.63983 * 4 3 2 34 34 H 0.97006 * 119.99720 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99768 * 258.03673 * 16 13 3 36 36 H 1.08999 * 109.46735 * 302.91899 * 18 17 16 37 37 H 1.08996 * 109.47328 * 182.92428 * 18 17 16 38 38 H 1.08001 * 120.00126 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.00190 * 180.27721 * 21 20 19 40 40 H 1.07999 * 119.99987 * 179.82899 * 22 21 20 41 41 H 1.07998 * 119.99545 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.99920 * 179.97438 * 24 23 22 43 43 H 1.09000 * 117.50049 * 215.00772 * 25 17 16 44 44 H 1.08997 * 117.49577 * 0.02567 * 25 17 16 45 45 H 1.08998 * 117.49608 * 359.97438 * 26 17 16 46 46 H 1.09003 * 117.49871 * 144.97737 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1477 2.1125 -1.2628 5 6 3.2232 1.4753 -2.1044 6 1 3.7064 0.5697 -1.7683 7 6 3.5905 2.0484 -3.3034 8 7 4.5288 1.4920 -4.0380 9 14 2.7545 3.6143 -3.8851 10 1 3.5023 4.7926 -3.3776 11 1 2.7345 3.6426 -5.3697 12 1 1.3620 3.6525 -3.3705 13 16 2.4241 2.1160 1.4275 14 8 1.5253 1.6138 2.4069 15 8 2.5663 3.5003 1.1401 16 7 3.9291 1.5691 1.8498 17 6 5.1182 2.1150 1.1911 18 6 6.3598 1.2214 1.2243 19 6 6.0794 -0.0560 0.4756 20 6 5.5165 -1.1336 1.1336 21 6 5.2553 -2.3039 0.4458 22 6 5.5655 -2.3997 -0.8979 23 6 6.1333 -1.3240 -1.5547 24 6 6.3904 -0.1523 -0.8679 25 6 4.9028 2.9788 -0.0532 26 6 5.3346 3.6279 1.2641 27 1 -0.3634 -1.0236 0.0903 28 1 -0.3633 0.5901 0.8414 29 1 -0.3633 0.4337 -0.9316 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.1997 2.0808 -1.7999 33 1 2.4141 3.1492 -1.0568 34 1 4.7870 1.8950 -4.8818 35 1 4.0232 0.8873 2.5334 36 1 6.6121 0.9884 2.2588 37 1 7.1947 1.7418 0.7551 38 1 5.2773 -1.0598 2.1842 39 1 4.8114 -3.1442 0.9588 40 1 5.3640 -3.3150 -1.4347 41 1 6.3760 -1.3991 -2.6044 42 1 6.8344 0.6880 -1.3809 43 1 5.6454 2.9104 -0.8481 44 1 3.8762 3.1413 -0.3814 45 1 4.5919 4.2171 1.8020 46 1 6.3614 3.9866 1.3362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336943573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:51 Heat of formation + Delta-G solvation = -14.972762 kcal Electronic energy + Delta-G solvation = -30132.536931 eV Core-core repulsion = 26343.156660 eV Total energy + Delta-G solvation = -3789.380271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.21182 -37.79934 -36.52637 -36.17587 -35.33955 -32.59720 -31.91102 -31.59907 -30.31484 -30.19627 -27.16332 -26.74274 -23.00477 -22.19164 -21.80752 -21.36626 -21.30912 -20.01163 -18.54698 -17.36479 -17.14772 -16.66303 -16.35256 -15.79655 -15.22996 -14.67717 -14.51667 -14.26416 -13.96048 -13.88128 -13.48294 -13.23489 -12.91261 -12.87701 -12.66558 -12.40428 -12.19937 -12.08989 -12.01821 -11.85758 -11.54150 -11.49331 -11.38620 -11.14719 -10.93382 -10.87852 -10.69766 -10.57076 -10.48560 -10.38703 -10.15454 -9.97988 -9.82098 -9.49430 -8.60831 -8.55371 -8.34317 -8.16038 -8.07258 -6.11293 -4.08020 1.16799 1.86533 1.96273 3.26129 3.33235 3.39042 3.41220 4.01244 4.22316 4.37990 4.44382 4.88282 4.99965 5.18458 5.18818 5.26527 5.29771 5.39693 5.48556 5.51364 5.58490 5.73894 5.79795 5.82919 5.94865 6.00123 6.06720 6.09345 6.18136 6.29233 6.30922 6.44704 6.52703 6.58172 6.58232 6.65033 6.78748 6.84954 6.94037 7.05894 7.07648 7.15063 7.17115 7.25320 7.48954 7.53801 7.61508 8.47445 8.98607 9.50421 11.00158 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.007704 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.464986 B = 3633.712943 C = 4558.923973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.135 3.865 3 N -0.982 5.982 4 C 0.209 3.791 5 C -0.521 4.521 6 H 0.090 0.910 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.853 3.147 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.266 1.266 13 S 2.782 3.218 14 O -0.997 6.997 15 O -0.981 6.981 16 N -1.090 6.090 17 C 0.121 3.879 18 C -0.038 4.038 19 C -0.075 4.075 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.095 4.095 24 C -0.080 4.080 25 C -0.165 4.165 26 C -0.203 4.203 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.048 0.952 34 H 0.262 0.738 35 H 0.408 0.592 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.130 0.870 45 H 0.104 0.896 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -4.474 8.839 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 N -0.823 5.823 4 C 0.085 3.915 5 C -0.560 4.560 6 H 0.108 0.892 7 C -0.121 4.121 8 N -0.527 5.527 9 Si 0.680 3.320 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.191 1.191 13 S 2.790 3.210 14 O -0.981 6.981 15 O -0.965 6.965 16 N -0.844 5.844 17 C 0.031 3.969 18 C -0.077 4.077 19 C -0.075 4.075 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.113 4.113 24 C -0.098 4.098 25 C -0.203 4.203 26 C -0.243 4.243 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.148 0.852 45 H 0.122 0.878 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.653 -3.693 9.021 10.103 hybrid contribution -0.261 0.259 -0.552 0.664 sum 2.391 -3.434 8.469 9.446 Atomic orbital electron populations 1.22211 0.97051 1.01378 1.02288 1.20931 0.93298 0.82403 1.02462 1.57464 1.78607 1.23199 1.23048 1.19704 0.98205 0.92304 0.81247 1.21311 1.18858 1.12386 1.03453 0.89250 1.24725 0.94583 0.96459 0.96344 1.69867 1.29796 1.39728 1.13287 0.87217 0.81234 0.85282 0.78304 1.19755 1.21255 1.19070 1.01888 0.72478 0.73769 0.72824 1.93559 1.62207 1.81993 1.60299 1.93560 1.86416 1.31633 1.84870 1.55411 1.22052 1.55623 1.51353 1.20083 0.86828 0.89376 1.00628 1.20162 0.94929 0.92755 0.99875 1.19612 0.99166 0.94348 0.94419 1.20798 1.00674 0.93448 0.99105 1.20931 1.01220 0.97604 0.94794 1.21027 1.00087 0.98775 0.94612 1.21085 0.97672 0.93011 0.99533 1.20953 0.98616 0.97282 0.92959 1.24054 1.06715 0.99104 0.90448 1.23798 1.02333 0.94740 1.03390 0.92378 0.92569 0.92241 0.89384 0.92443 0.95431 0.93475 0.92841 0.75977 0.90909 0.89799 0.87318 0.87107 0.87062 0.86262 0.86208 0.87666 0.85205 0.87756 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.23 37.16 0.38 -2.31 16 2 C 0.14 2.36 5.96 -4.04 -0.02 2.33 16 3 N -0.98 -19.21 2.93 -115.66 -0.34 -19.55 16 4 C 0.21 4.65 3.80 -5.20 -0.02 4.63 16 5 C -0.52 -12.59 7.57 -34.44 -0.26 -12.85 16 6 H 0.09 2.32 7.78 -52.49 -0.41 1.91 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -23.66 13.96 55.43 0.77 -22.89 16 9 Si 0.85 20.01 27.38 -169.99 -4.65 15.35 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.13 6.67 56.52 0.38 -5.76 16 13 S 2.78 52.82 5.68 -107.50 -0.61 52.21 16 14 O -1.00 -20.00 17.26 -57.17 -0.99 -20.99 16 15 O -0.98 -20.79 12.28 -57.17 -0.70 -21.49 16 16 N -1.09 -17.34 5.82 0.54 0.00 -17.33 16 17 C 0.12 1.93 2.68 -131.82 -0.35 1.57 16 18 C -0.04 -0.52 5.38 -27.88 -0.15 -0.67 16 19 C -0.08 -1.15 5.03 -104.62 -0.53 -1.67 16 20 C -0.12 -1.72 9.47 -39.58 -0.37 -2.10 16 21 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 22 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 23 C -0.09 -1.61 10.05 -39.58 -0.40 -2.01 16 24 C -0.08 -1.37 9.69 -39.59 -0.38 -1.75 16 25 C -0.17 -3.14 8.03 -26.69 -0.21 -3.35 16 26 C -0.20 -3.28 9.54 -26.69 -0.25 -3.54 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.92 7.88 -51.93 -0.41 0.51 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.62 7.36 -51.93 -0.38 1.24 16 31 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16 32 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 33 H 0.05 1.10 4.35 -51.93 -0.23 0.88 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 35 H 0.41 5.45 8.60 -34.48 -0.30 5.16 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.08 1.06 8.03 -51.93 -0.42 0.65 16 38 H 0.11 1.29 7.84 -52.49 -0.41 0.88 16 39 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 42 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 43 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 44 H 0.13 2.80 2.02 -51.93 -0.10 2.70 16 45 H 0.10 1.81 6.78 -51.93 -0.35 1.45 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 376.41 15.07 5.67 5.67 Total: -1.00 -28.80 376.41 -11.08 -39.88 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -6.77 Total: 13.36 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -3.47 Total: -24.23 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: 0.44 Total: -59.77 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.69 Total: -42.48 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.65 Total: 15.35 kcal Atomic # 16 Polarization: 52.82 SS G_CDS: -0.61 Total: 52.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.80 -11.08 -39.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336943573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.909 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds