Wall clock time and date at job start Tue Mar 31 2020 21:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46508 * 109.47400 * 2 1 4 4 C 1.46495 * 119.99926 * 275.51212 * 3 2 1 5 5 C 1.50699 * 109.47138 * 293.63697 * 4 3 2 6 6 H 1.08001 * 120.00269 * 4.51432 * 5 4 3 7 7 C 1.37879 * 120.00091 * 184.52128 * 5 4 3 8 8 N 1.31513 * 119.99835 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99805 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47104 * 90.00848 * 9 7 5 11 11 H 1.48504 * 109.46830 * 210.00369 * 9 7 5 12 12 H 1.48499 * 109.47295 * 330.00302 * 9 7 5 13 13 S 1.65597 * 119.99739 * 95.50339 * 3 2 1 14 14 O 1.42096 * 106.40589 * 325.56906 * 13 3 2 15 15 O 1.42102 * 106.40144 * 192.64386 * 13 3 2 16 16 N 1.65607 * 107.21493 * 79.10752 * 13 3 2 17 17 C 1.46490 * 119.99984 * 78.03801 * 16 13 3 18 18 C 1.53002 * 115.55090 * 202.81776 * 17 16 13 19 19 C 1.50698 * 109.46974 * 62.92228 * 18 17 16 20 20 C 1.38240 * 119.99762 * 272.21157 * 19 18 17 21 21 C 1.38238 * 119.99830 * 179.78842 * 20 19 18 22 22 C 1.38237 * 119.99842 * 0.44466 * 21 20 19 23 23 C 1.38238 * 120.00046 * 359.81256 * 22 21 20 24 24 C 1.38230 * 119.99874 * 359.97438 * 23 22 21 25 25 C 1.53001 * 117.50266 * 348.48565 * 17 16 13 26 26 C 1.53006 * 117.50074 * 57.14674 * 17 16 13 27 27 H 1.08995 * 109.47314 * 185.04109 * 1 2 3 28 28 H 1.09004 * 109.46896 * 305.04196 * 1 2 3 29 29 H 1.09000 * 109.47195 * 65.03533 * 1 2 3 30 30 H 1.09002 * 109.47312 * 240.00742 * 2 1 3 31 31 H 1.08992 * 109.47255 * 120.00293 * 2 1 3 32 32 H 1.09000 * 109.47861 * 53.63787 * 4 3 2 33 33 H 1.09003 * 109.47219 * 173.63983 * 4 3 2 34 34 H 0.97006 * 119.99720 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99768 * 258.03673 * 16 13 3 36 36 H 1.08999 * 109.46735 * 302.91899 * 18 17 16 37 37 H 1.08996 * 109.47328 * 182.92428 * 18 17 16 38 38 H 1.08001 * 120.00126 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.00190 * 180.27721 * 21 20 19 40 40 H 1.07999 * 119.99987 * 179.82899 * 22 21 20 41 41 H 1.07998 * 119.99545 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.99920 * 179.97438 * 24 23 22 43 43 H 1.09000 * 117.50049 * 215.00772 * 25 17 16 44 44 H 1.08997 * 117.49577 * 0.02567 * 25 17 16 45 45 H 1.08998 * 117.49608 * 359.97438 * 26 17 16 46 46 H 1.09003 * 117.49871 * 144.97737 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1477 2.1125 -1.2628 5 6 3.2232 1.4753 -2.1044 6 1 3.7064 0.5697 -1.7683 7 6 3.5905 2.0484 -3.3034 8 7 4.5288 1.4920 -4.0380 9 14 2.7545 3.6143 -3.8851 10 1 3.5023 4.7926 -3.3776 11 1 2.7345 3.6426 -5.3697 12 1 1.3620 3.6525 -3.3705 13 16 2.4241 2.1160 1.4275 14 8 1.5253 1.6138 2.4069 15 8 2.5663 3.5003 1.1401 16 7 3.9291 1.5691 1.8498 17 6 5.1182 2.1150 1.1911 18 6 6.3598 1.2214 1.2243 19 6 6.0794 -0.0560 0.4756 20 6 5.5165 -1.1336 1.1336 21 6 5.2553 -2.3039 0.4458 22 6 5.5655 -2.3997 -0.8979 23 6 6.1333 -1.3240 -1.5547 24 6 6.3904 -0.1523 -0.8679 25 6 4.9028 2.9788 -0.0532 26 6 5.3346 3.6279 1.2641 27 1 -0.3634 -1.0236 0.0903 28 1 -0.3633 0.5901 0.8414 29 1 -0.3633 0.4337 -0.9316 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.1997 2.0808 -1.7999 33 1 2.4141 3.1492 -1.0568 34 1 4.7870 1.8950 -4.8818 35 1 4.0232 0.8873 2.5334 36 1 6.6121 0.9884 2.2588 37 1 7.1947 1.7418 0.7551 38 1 5.2773 -1.0598 2.1842 39 1 4.8114 -3.1442 0.9588 40 1 5.3640 -3.3150 -1.4347 41 1 6.3760 -1.3991 -2.6044 42 1 6.8344 0.6880 -1.3809 43 1 5.6454 2.9104 -0.8481 44 1 3.8762 3.1413 -0.3814 45 1 4.5919 4.2171 1.8020 46 1 6.3614 3.9866 1.3362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336943573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:50 Heat of formation + Delta-G solvation = -32.203242 kcal Electronic energy + Delta-G solvation = -30133.284101 eV Core-core repulsion = 26343.156660 eV Total energy + Delta-G solvation = -3790.127441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.45124 -39.13817 -38.02669 -37.74437 -36.91820 -34.49911 -33.10621 -32.97031 -31.74967 -31.50356 -28.88818 -27.92272 -24.62613 -23.49022 -23.14191 -22.90737 -22.57837 -21.30172 -20.02438 -19.00083 -18.64721 -18.47781 -17.61239 -17.22946 -16.66268 -16.12889 -15.84875 -15.76662 -15.46865 -15.19482 -14.92051 -14.62657 -14.47915 -14.13420 -14.06863 -13.96987 -13.73146 -13.65496 -13.38951 -13.15524 -13.10491 -12.88203 -12.72654 -12.64537 -12.58281 -12.40728 -12.29989 -12.04620 -11.80815 -11.71335 -11.66870 -11.56678 -11.40616 -11.10764 -10.59832 -9.91779 -9.70525 -9.53860 -9.35193 -8.11459 -6.08554 -0.34036 0.67453 0.76452 1.35775 1.42306 1.46580 1.93209 2.42201 2.52709 2.94807 3.16990 3.22607 3.38313 3.68749 3.92681 3.98119 4.02972 4.16123 4.28403 4.35234 4.40885 4.44514 4.49039 4.56959 4.70346 4.77644 4.82927 4.86648 4.96287 4.98418 5.01219 5.04438 5.08468 5.20619 5.36178 5.38403 5.39868 5.42792 5.45094 5.54037 5.57920 5.76880 5.84456 5.86925 5.96033 6.23946 6.35909 6.49278 6.96897 7.50810 9.01594 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008623 B = 0.007704 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.464986 B = 3633.712943 C = 4558.923973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.129 3.871 3 N -0.987 5.987 4 C 0.217 3.783 5 C -0.496 4.496 6 H 0.069 0.931 7 C 0.043 3.957 8 N -0.919 5.919 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.258 1.258 13 S 2.793 3.207 14 O -1.004 7.004 15 O -1.004 7.004 16 N -1.078 6.078 17 C 0.136 3.864 18 C -0.035 4.035 19 C -0.080 4.080 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.134 4.134 23 C -0.120 4.120 24 C -0.101 4.101 25 C -0.200 4.200 26 C -0.188 4.188 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.040 0.960 34 H 0.259 0.741 35 H 0.424 0.576 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -5.401 11.535 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.004 3.996 3 N -0.827 5.827 4 C 0.092 3.908 5 C -0.535 4.535 6 H 0.087 0.913 7 C -0.156 4.156 8 N -0.559 5.559 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.182 1.182 13 S 2.801 3.199 14 O -0.988 6.988 15 O -0.988 6.988 16 N -0.836 5.836 17 C 0.046 3.954 18 C -0.074 4.074 19 C -0.080 4.080 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.152 4.152 23 C -0.139 4.139 24 C -0.119 4.119 25 C -0.238 4.238 26 C -0.227 4.227 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.260 0.740 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.144 0.856 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.266 -4.636 11.738 12.822 hybrid contribution -0.137 0.491 -1.350 1.443 sum 2.129 -4.145 10.388 11.386 Atomic orbital electron populations 1.22187 0.95734 1.03095 1.01575 1.21108 0.94464 0.81233 1.02823 1.57439 1.79164 1.23995 1.22093 1.19433 0.97065 0.92093 0.82186 1.21273 1.18224 1.11050 1.02952 0.91287 1.25179 0.95209 0.98341 0.96908 1.69968 1.31311 1.40952 1.13705 0.86614 0.80938 0.83106 0.77752 1.20035 1.21414 1.18219 1.01442 0.72845 0.73202 0.72373 1.93546 1.62997 1.82009 1.60271 1.93535 1.86841 1.33280 1.85123 1.55099 1.21034 1.55989 1.51512 1.20196 0.87231 0.89917 0.98026 1.20254 0.93790 0.91535 1.01811 1.19769 0.99054 0.95588 0.93590 1.21186 0.99388 0.92775 1.00558 1.21311 1.00175 0.98618 0.94180 1.21251 0.99667 0.98657 0.95600 1.21104 0.99416 0.94225 0.99109 1.20911 0.99969 0.96758 0.94258 1.23869 1.04957 1.03273 0.91681 1.23840 1.03602 0.94758 1.00532 0.89474 0.93165 0.93045 0.90773 0.90268 0.95758 0.94243 0.93161 0.74035 0.87368 0.89027 0.84153 0.84018 0.85561 0.88071 0.88371 0.89289 0.87701 0.88742 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.94 10.23 71.98 0.74 -4.20 16 2 C 0.13 4.28 5.96 86.38 0.51 4.79 16 3 N -0.99 -37.68 2.93 -519.85 -1.52 -39.20 16 4 C 0.22 9.68 3.80 85.63 0.33 10.00 16 5 C -0.50 -24.40 7.57 25.60 0.19 -24.21 16 6 H 0.07 3.68 7.78 -2.91 -0.02 3.65 16 7 C 0.04 2.26 5.47 84.66 0.46 2.72 16 8 N -0.92 -50.70 13.96 21.45 0.30 -50.41 16 9 Si 0.89 41.68 27.38 68.60 1.88 43.56 16 10 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.26 -11.65 6.67 99.48 0.66 -10.99 16 13 S 2.79 101.59 5.68 -56.49 -0.32 101.27 16 14 O -1.00 -37.92 17.26 -128.00 -2.21 -40.13 16 15 O -1.00 -41.85 12.28 -128.00 -1.57 -43.42 16 16 N -1.08 -31.43 5.82 -152.22 -0.89 -32.32 16 17 C 0.14 4.07 2.68 3.61 0.01 4.08 16 18 C -0.04 -0.86 5.38 29.85 0.16 -0.70 16 19 C -0.08 -2.30 5.03 -19.87 -0.10 -2.40 16 20 C -0.12 -3.01 9.47 22.27 0.21 -2.80 16 21 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 22 C -0.13 -3.93 10.05 22.27 0.22 -3.71 16 23 C -0.12 -4.22 10.05 22.27 0.22 -4.00 16 24 C -0.10 -3.52 9.69 22.27 0.22 -3.31 16 25 C -0.20 -7.57 8.03 30.62 0.25 -7.32 16 26 C -0.19 -5.75 9.54 30.62 0.29 -5.46 16 27 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 1.54 7.88 -2.38 -0.02 1.52 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 2.67 7.36 -2.39 -0.02 2.65 16 31 H 0.08 2.25 7.88 -2.39 -0.02 2.24 16 32 H 0.02 1.10 7.51 -2.39 -0.02 1.09 16 33 H 0.04 1.87 4.35 -2.39 -0.01 1.86 16 34 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 35 H 0.42 9.62 8.60 -96.74 -0.83 8.79 16 36 H 0.11 1.94 8.10 -2.39 -0.02 1.92 16 37 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16 38 H 0.14 2.58 7.84 -2.91 -0.02 2.56 16 39 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 40 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 41 H 0.10 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.10 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 44 H 0.11 4.57 2.02 -2.39 0.00 4.57 16 45 H 0.09 3.12 6.78 -2.39 -0.02 3.11 16 46 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -63.19 376.41 -0.28 -63.47 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: 0.12 Total: 36.59 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 3.94 Total: -39.41 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -2.11 Total: -121.93 kcal Atomic # 8 Polarization: -79.77 SS G_CDS: -3.78 Total: -83.55 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.88 Total: 43.56 kcal Atomic # 16 Polarization: 101.59 SS G_CDS: -0.32 Total: 101.27 kcal Total: -63.19 -0.28 -63.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336943573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.266 kcal (2) G-P(sol) polarization free energy of solvation -63.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds