Wall clock time and date at job start Tue Mar 31 2020 21:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47038 * 2 1 4 4 C 1.46497 * 120.00320 * 275.00131 * 3 2 1 5 5 C 1.50697 * 109.47070 * 274.99829 * 4 3 2 6 6 H 1.07999 * 120.00334 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00343 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00182 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99641 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.46909 * 90.00078 * 9 7 5 11 11 H 1.48493 * 109.46875 * 210.00071 * 9 7 5 12 12 H 1.48497 * 109.46970 * 329.99815 * 9 7 5 13 13 S 1.65605 * 119.99705 * 94.99739 * 3 2 1 14 14 O 1.42096 * 106.40503 * 336.46007 * 13 3 2 15 15 O 1.42104 * 106.39946 * 203.54141 * 13 3 2 16 16 N 1.65595 * 107.21665 * 90.00498 * 13 3 2 17 17 C 1.46502 * 120.00371 * 64.99549 * 16 13 3 18 18 C 1.53781 * 113.61566 * 145.00147 * 17 16 13 19 19 C 1.53774 * 87.08111 * 89.20223 * 18 17 16 20 20 C 1.50701 * 113.61298 * 139.98317 * 19 18 17 21 21 C 1.38235 * 119.99808 * 119.99933 * 20 19 18 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 19 23 23 C 1.38231 * 120.00070 * 0.07188 * 22 21 20 24 24 C 1.38234 * 119.99869 * 359.88510 * 23 22 21 25 25 C 1.38230 * 119.99865 * 299.97679 * 20 19 18 26 26 C 1.53777 * 87.08353 * 25.43241 * 19 18 17 27 27 H 1.09001 * 109.46725 * 60.00063 * 1 2 3 28 28 H 1.08997 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47082 * 300.00225 * 1 2 3 30 30 H 1.08997 * 109.47619 * 240.00318 * 2 1 3 31 31 H 1.08997 * 109.47206 * 120.00007 * 2 1 3 32 32 H 1.09003 * 109.47117 * 34.99619 * 4 3 2 33 33 H 1.09001 * 109.47482 * 154.99916 * 4 3 2 34 34 H 0.97007 * 120.00012 * 179.97438 * 8 7 5 35 35 H 0.96999 * 119.99879 * 245.00023 * 16 13 3 36 36 H 1.08999 * 112.84741 * 13.80962 * 17 16 13 37 37 H 1.09005 * 113.61389 * 334.65376 * 18 17 16 38 38 H 1.09002 * 113.69248 * 203.76394 * 18 17 16 39 39 H 1.09002 * 113.61123 * 270.79872 * 19 18 17 40 40 H 1.08000 * 120.00616 * 359.70324 * 21 20 19 41 41 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 42 42 H 1.08005 * 119.99882 * 180.02562 * 23 22 21 43 43 H 1.08007 * 119.99474 * 180.10845 * 24 23 22 44 44 H 1.08001 * 120.00350 * 359.97438 * 25 20 19 45 45 H 1.08997 * 113.61365 * 89.11660 * 26 19 18 46 46 H 1.08997 * 113.61811 * 220.02137 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 3.4948 1.7890 -1.8822 6 1 4.1721 1.1113 -1.3839 7 6 3.8526 2.3608 -3.0848 8 7 5.0187 2.0813 -3.6246 9 14 2.6808 3.5325 -3.9471 10 1 2.9452 4.9210 -3.4919 11 1 2.8852 3.4455 -5.4153 12 1 1.2805 3.1624 -3.6195 13 16 2.4121 2.1202 1.4288 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5187 1.1999 16 7 4.0143 1.8138 1.7138 17 6 5.0350 2.3526 0.8115 18 6 6.3367 2.7554 1.5243 19 6 6.8182 1.3138 1.2909 20 6 8.2714 1.2179 0.9035 21 6 9.1519 0.5036 1.6943 22 6 10.4848 0.4153 1.3386 23 6 10.9375 1.0425 0.1929 24 6 10.0567 1.7560 -0.5983 25 6 8.7237 1.8439 -0.2430 26 6 5.8567 1.2703 0.0915 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3617 1.8098 -1.9453 33 1 2.0921 3.1804 -1.0755 34 1 5.2703 2.4833 -4.4709 35 1 4.2770 1.2776 2.4782 36 1 4.6465 3.1219 0.1442 37 1 6.1992 3.0049 2.5764 38 1 6.9184 3.5028 0.9846 39 1 6.5481 0.6279 2.0939 40 1 8.7994 0.0183 2.5924 41 1 11.1728 -0.1424 1.9567 42 1 11.9788 0.9731 -0.0852 43 1 10.4101 2.2445 -1.4944 44 1 8.0357 2.4013 -0.8613 45 1 6.3062 1.6115 -0.8410 46 1 5.3317 0.3209 -0.0130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337054222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:59 Heat of formation + Delta-G solvation = -32.359856 kcal Electronic energy + Delta-G solvation = -28516.196500 eV Core-core repulsion = 24726.062268 eV Total energy + Delta-G solvation = -3790.134232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.88201 -37.89176 -36.70090 -36.15951 -35.28121 -32.85420 -32.64763 -30.75853 -30.23881 -30.09168 -27.15243 -25.26362 -24.69316 -22.90892 -22.43814 -21.57325 -21.28099 -19.21926 -18.61995 -17.47298 -16.93460 -16.74965 -16.55994 -15.74477 -15.22366 -15.00844 -14.75325 -14.23882 -14.13878 -13.83801 -13.58619 -13.32126 -13.20325 -12.95311 -12.66375 -12.50559 -12.26929 -12.04952 -11.97216 -11.94426 -11.83565 -11.53209 -11.43418 -11.21973 -11.14395 -11.01075 -10.98347 -10.58793 -10.49920 -10.37872 -10.32038 -10.16016 -9.70660 -9.45364 -8.95273 -8.72899 -8.65430 -8.40160 -8.11132 -6.17327 -4.16807 1.23553 1.53526 1.58742 3.24877 3.31767 3.36582 3.46695 3.94523 4.10826 4.34376 4.84998 4.92138 5.00554 5.11643 5.13869 5.15771 5.20177 5.31785 5.33698 5.41023 5.52476 5.65668 5.68885 5.70262 5.76348 5.84371 6.02350 6.02801 6.14337 6.20623 6.23755 6.26591 6.40077 6.44394 6.51239 6.59323 6.63452 6.70151 6.77697 6.86398 6.90449 7.06287 7.13408 7.20186 7.28854 7.50842 7.58291 8.40594 8.89489 9.44487 10.93258 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.004597 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.114995 B = 6088.864269 C = 7745.282744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.986 5.986 4 C 0.211 3.789 5 C -0.549 4.549 6 H 0.099 0.901 7 C 0.081 3.919 8 N -0.889 5.889 9 Si 0.862 3.138 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.266 1.266 13 S 2.789 3.211 14 O -0.999 6.999 15 O -0.983 6.983 16 N -1.110 6.110 17 C 0.139 3.861 18 C -0.135 4.135 19 C -0.086 4.086 20 C -0.060 4.060 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.119 4.119 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.041 0.959 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.110 0.890 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 -3.391 8.377 10.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.826 5.826 4 C 0.087 3.913 5 C -0.588 4.588 6 H 0.117 0.883 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.689 3.311 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.190 1.190 13 S 2.797 3.203 14 O -0.984 6.984 15 O -0.966 6.966 16 N -0.866 5.866 17 C 0.031 3.969 18 C -0.174 4.174 19 C -0.104 4.104 20 C -0.060 4.060 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.151 4.151 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.158 4.158 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.150 0.850 45 H 0.128 0.872 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.959 -2.708 8.598 10.288 hybrid contribution -0.035 0.040 -0.618 0.621 sum 4.924 -2.668 7.980 9.749 Atomic orbital electron populations 1.22218 0.97017 1.01524 1.02232 1.20988 0.93458 0.82570 1.02532 1.57482 1.78834 1.22995 1.23330 1.19619 0.98483 0.92047 0.81131 1.21765 1.01146 1.29365 1.06498 0.88342 1.24781 0.94826 0.95900 0.96756 1.69857 1.20342 1.43705 1.18826 0.87066 0.82455 0.82409 0.79164 1.19889 1.21270 1.19024 1.01625 0.72593 0.73605 0.72504 1.93552 1.70615 1.76271 1.57927 1.93567 1.86037 1.31249 1.85761 1.55765 1.25172 1.67917 1.37764 1.21612 0.87605 0.97019 0.90656 1.23396 0.97070 0.95948 1.01019 1.21728 0.90656 0.97867 1.00198 1.19832 0.95206 0.96361 0.94609 1.21030 0.93397 0.99945 0.99722 1.21050 0.95711 1.00246 0.97352 1.21074 0.99382 0.98934 0.95708 1.21162 0.93702 0.99224 0.99497 1.21226 0.95693 0.99255 0.96401 1.23487 0.95414 0.99981 0.96905 0.92307 0.92199 0.92612 0.89942 0.91636 0.94714 0.94108 0.92610 0.76259 0.86489 0.91347 0.89019 0.89291 0.86604 0.86697 0.86696 0.86265 0.85038 0.87192 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 10.24 37.16 0.38 -2.14 16 2 C 0.13 2.13 6.06 -4.04 -0.02 2.11 16 3 N -0.99 -18.70 2.82 -115.66 -0.33 -19.03 16 4 C 0.21 4.60 4.50 -5.20 -0.02 4.58 16 5 C -0.55 -13.06 8.34 -34.44 -0.29 -13.35 16 6 H 0.10 2.35 4.74 -52.49 -0.25 2.10 16 7 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -23.57 13.96 55.43 0.77 -22.79 16 9 Si 0.86 19.81 27.47 -169.99 -4.67 15.14 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 13 S 2.79 52.14 6.07 -107.50 -0.65 51.49 16 14 O -1.00 -19.39 17.11 -57.17 -0.98 -20.37 16 15 O -0.98 -21.48 16.21 -57.17 -0.93 -22.40 16 16 N -1.11 -17.45 5.79 -4.20 -0.02 -17.47 16 17 C 0.14 2.31 3.64 -67.12 -0.24 2.07 16 18 C -0.14 -1.90 7.33 -25.92 -0.19 -2.09 16 19 C -0.09 -1.19 3.81 -90.96 -0.35 -1.53 16 20 C -0.06 -0.84 5.29 -104.63 -0.55 -1.39 16 21 C -0.12 -1.55 9.71 -39.58 -0.38 -1.93 16 22 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 23 C -0.13 -1.59 10.05 -39.59 -0.40 -1.98 16 24 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 25 C -0.11 -1.58 8.61 -39.59 -0.34 -1.92 16 26 C -0.12 -1.99 5.07 -25.92 -0.13 -2.12 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 31 H 0.07 0.97 7.61 -51.93 -0.40 0.57 16 32 H 0.03 0.76 7.17 -51.93 -0.37 0.39 16 33 H 0.04 0.94 6.34 -51.93 -0.33 0.61 16 34 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.41 5.26 8.80 -34.46 -0.30 4.96 16 36 H 0.12 2.29 7.08 -51.93 -0.37 1.92 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.28 7.72 -51.93 -0.40 0.88 16 39 H 0.09 1.10 8.07 -51.93 -0.42 0.68 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 44 H 0.13 2.04 6.66 -52.49 -0.35 1.69 16 45 H 0.11 2.11 6.31 -51.93 -0.33 1.78 16 46 H 0.07 1.28 7.49 -51.93 -0.39 0.89 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -29.05 377.60 -11.42 -40.48 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.87 Total: 10.84 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -3.44 Total: -21.57 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.42 Total: -59.29 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -1.91 Total: -42.77 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.67 Total: 15.14 kcal Atomic # 16 Polarization: 52.14 SS G_CDS: -0.65 Total: 51.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.05 -11.42 -40.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337054222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.117 kcal (2) G-P(sol) polarization free energy of solvation -29.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds