Wall clock time and date at job start Tue Mar 31 2020 21:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47038 * 2 1 4 4 C 1.46497 * 120.00320 * 275.00131 * 3 2 1 5 5 C 1.50697 * 109.47070 * 274.99829 * 4 3 2 6 6 H 1.07999 * 120.00334 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00343 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00182 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99641 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.46909 * 90.00078 * 9 7 5 11 11 H 1.48493 * 109.46875 * 210.00071 * 9 7 5 12 12 H 1.48497 * 109.46970 * 329.99815 * 9 7 5 13 13 S 1.65605 * 119.99705 * 94.99739 * 3 2 1 14 14 O 1.42096 * 106.40503 * 336.46007 * 13 3 2 15 15 O 1.42104 * 106.39946 * 203.54141 * 13 3 2 16 16 N 1.65595 * 107.21665 * 90.00498 * 13 3 2 17 17 C 1.46502 * 120.00371 * 64.99549 * 16 13 3 18 18 C 1.53781 * 113.61566 * 145.00147 * 17 16 13 19 19 C 1.53774 * 87.08111 * 89.20223 * 18 17 16 20 20 C 1.50701 * 113.61298 * 139.98317 * 19 18 17 21 21 C 1.38235 * 119.99808 * 119.99933 * 20 19 18 22 22 C 1.38243 * 119.99602 * 179.97438 * 21 20 19 23 23 C 1.38231 * 120.00070 * 0.07188 * 22 21 20 24 24 C 1.38234 * 119.99869 * 359.88510 * 23 22 21 25 25 C 1.38230 * 119.99865 * 299.97679 * 20 19 18 26 26 C 1.53777 * 87.08353 * 25.43241 * 19 18 17 27 27 H 1.09001 * 109.46725 * 60.00063 * 1 2 3 28 28 H 1.08997 * 109.46813 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47082 * 300.00225 * 1 2 3 30 30 H 1.08997 * 109.47619 * 240.00318 * 2 1 3 31 31 H 1.08997 * 109.47206 * 120.00007 * 2 1 3 32 32 H 1.09003 * 109.47117 * 34.99619 * 4 3 2 33 33 H 1.09001 * 109.47482 * 154.99916 * 4 3 2 34 34 H 0.97007 * 120.00012 * 179.97438 * 8 7 5 35 35 H 0.96999 * 119.99879 * 245.00023 * 16 13 3 36 36 H 1.08999 * 112.84741 * 13.80962 * 17 16 13 37 37 H 1.09005 * 113.61389 * 334.65376 * 18 17 16 38 38 H 1.09002 * 113.69248 * 203.76394 * 18 17 16 39 39 H 1.09002 * 113.61123 * 270.79872 * 19 18 17 40 40 H 1.08000 * 120.00616 * 359.70324 * 21 20 19 41 41 H 1.08001 * 119.99556 * 179.97438 * 22 21 20 42 42 H 1.08005 * 119.99882 * 180.02562 * 23 22 21 43 43 H 1.08007 * 119.99474 * 180.10845 * 24 23 22 44 44 H 1.08001 * 120.00350 * 359.97438 * 25 20 19 45 45 H 1.08997 * 113.61365 * 89.11660 * 26 19 18 46 46 H 1.08997 * 113.61811 * 220.02137 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 3.4948 1.7890 -1.8822 6 1 4.1721 1.1113 -1.3839 7 6 3.8526 2.3608 -3.0848 8 7 5.0187 2.0813 -3.6246 9 14 2.6808 3.5325 -3.9471 10 1 2.9452 4.9210 -3.4919 11 1 2.8852 3.4455 -5.4153 12 1 1.2805 3.1624 -3.6195 13 16 2.4121 2.1202 1.4288 14 8 1.6868 1.4415 2.4448 15 8 2.3056 3.5187 1.1999 16 7 4.0143 1.8138 1.7138 17 6 5.0350 2.3526 0.8115 18 6 6.3367 2.7554 1.5243 19 6 6.8182 1.3138 1.2909 20 6 8.2714 1.2179 0.9035 21 6 9.1519 0.5036 1.6943 22 6 10.4848 0.4153 1.3386 23 6 10.9375 1.0425 0.1929 24 6 10.0567 1.7560 -0.5983 25 6 8.7237 1.8439 -0.2430 26 6 5.8567 1.2703 0.0915 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3617 1.8098 -1.9453 33 1 2.0921 3.1804 -1.0755 34 1 5.2703 2.4833 -4.4709 35 1 4.2770 1.2776 2.4782 36 1 4.6465 3.1219 0.1442 37 1 6.1992 3.0049 2.5764 38 1 6.9184 3.5028 0.9846 39 1 6.5481 0.6279 2.0939 40 1 8.7994 0.0183 2.5924 41 1 11.1728 -0.1424 1.9567 42 1 11.9788 0.9731 -0.0852 43 1 10.4101 2.2445 -1.4944 44 1 8.0357 2.4013 -0.8613 45 1 6.3062 1.6115 -0.8410 46 1 5.3317 0.3209 -0.0130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337054222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:58 Heat of formation + Delta-G solvation = -50.117348 kcal Electronic energy + Delta-G solvation = -28516.966523 eV Core-core repulsion = 24726.062268 eV Total energy + Delta-G solvation = -3790.904255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03020 -39.01531 -38.27646 -37.69499 -36.88944 -34.54709 -34.09534 -31.75399 -31.74180 -31.18910 -28.84524 -26.55525 -25.85662 -24.48985 -23.44469 -23.13466 -22.39341 -20.63281 -19.92095 -19.05006 -18.62511 -18.27867 -17.73012 -17.24383 -16.53939 -16.16640 -16.08627 -15.86137 -15.53577 -15.03561 -14.86595 -14.55956 -14.50912 -14.20301 -14.09493 -13.96890 -13.69233 -13.54838 -13.42334 -13.29945 -13.14671 -13.07192 -13.05921 -12.74647 -12.58179 -12.39866 -12.18547 -12.08043 -12.02657 -11.79475 -11.61032 -11.53102 -11.28887 -10.92281 -10.64550 -10.29754 -9.72527 -9.70968 -9.43280 -8.14673 -6.15170 -0.28030 0.53754 0.59521 1.38366 1.44531 1.48505 1.97493 2.42370 2.62112 2.93886 3.18683 3.42741 3.70835 3.84561 3.91343 3.98409 4.09710 4.23153 4.24051 4.28046 4.37027 4.44038 4.45440 4.53647 4.70137 4.72141 4.75342 4.87357 4.98943 4.99363 5.02199 5.07330 5.10219 5.17593 5.23921 5.27111 5.37438 5.40543 5.49477 5.59193 5.64828 5.68934 5.72679 5.83996 5.90760 6.22584 6.27831 6.46326 6.95234 7.47418 8.97055 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.004597 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.114995 B = 6088.864269 C = 7745.282744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.989 5.989 4 C 0.217 3.783 5 C -0.536 4.536 6 H 0.093 0.907 7 C 0.037 3.963 8 N -0.922 5.922 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.252 1.252 13 S 2.801 3.199 14 O -1.002 7.002 15 O -1.016 7.016 16 N -1.094 6.094 17 C 0.135 3.865 18 C -0.125 4.125 19 C -0.067 4.067 20 C -0.076 4.076 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.130 4.130 26 C -0.118 4.118 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.422 0.578 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.126 0.874 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.050 -4.784 10.345 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.830 5.830 4 C 0.092 3.908 5 C -0.575 4.575 6 H 0.110 0.890 7 C -0.163 4.163 8 N -0.562 5.562 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.176 1.176 13 S 2.809 3.191 14 O -0.986 6.986 15 O -0.999 6.999 16 N -0.854 5.854 17 C 0.027 3.973 18 C -0.164 4.164 19 C -0.085 4.085 20 C -0.076 4.076 21 C -0.143 4.143 22 C -0.143 4.143 23 C -0.151 4.151 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.157 4.157 27 H 0.071 0.929 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.258 0.742 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.159 0.841 43 H 0.144 0.856 44 H 0.125 0.875 45 H 0.096 0.904 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.476 -4.121 10.590 12.614 hybrid contribution -0.146 0.418 -1.198 1.277 sum 5.330 -3.703 9.392 11.416 Atomic orbital electron populations 1.22203 0.95643 1.03296 1.01583 1.21250 0.94681 0.81070 1.03357 1.57439 1.79325 1.24064 1.22151 1.19373 0.97347 0.91706 0.82342 1.21993 1.01705 1.27983 1.05814 0.88960 1.25322 0.95803 0.97349 0.97793 1.69961 1.21737 1.45227 1.19248 0.86420 0.81864 0.80734 0.78237 1.20466 1.21375 1.17620 1.01122 0.72980 0.72793 0.72199 1.93542 1.71138 1.76093 1.57874 1.93527 1.86719 1.33496 1.86180 1.55379 1.23894 1.68053 1.38122 1.21502 0.88385 0.96363 0.91019 1.23331 0.94907 0.96397 1.01812 1.21631 0.90225 0.97835 0.98856 1.19870 0.95426 0.97358 0.94955 1.21321 0.93627 0.99255 1.00108 1.21452 0.95902 0.99627 0.97287 1.21418 1.00404 0.97867 0.95400 1.21355 0.93449 0.99911 1.00305 1.21182 0.96215 1.00350 0.97107 1.23283 0.96390 0.99016 0.97009 0.92879 0.89265 0.93302 0.90150 0.89797 0.94260 0.95378 0.92925 0.74247 0.89981 0.89160 0.89476 0.86865 0.84280 0.83652 0.84112 0.85615 0.87504 0.90398 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 10.24 71.98 0.74 -3.91 16 2 C 0.12 3.79 6.06 86.38 0.52 4.31 16 3 N -0.99 -37.10 2.82 -519.85 -1.47 -38.57 16 4 C 0.22 9.53 4.50 85.63 0.39 9.91 16 5 C -0.54 -26.07 8.34 25.60 0.21 -25.85 16 6 H 0.09 4.55 4.74 -2.91 -0.01 4.54 16 7 C 0.04 1.93 5.47 84.66 0.46 2.40 16 8 N -0.92 -50.68 13.96 21.45 0.30 -50.38 16 9 Si 0.90 41.22 27.47 68.60 1.88 43.10 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 13 S 2.80 103.10 6.07 -56.49 -0.34 102.76 16 14 O -1.00 -37.26 17.11 -128.00 -2.19 -39.45 16 15 O -1.02 -44.69 16.21 -128.00 -2.08 -46.76 16 16 N -1.09 -33.47 5.79 -167.19 -0.97 -34.44 16 17 C 0.14 4.58 3.64 45.52 0.17 4.75 16 18 C -0.13 -3.46 7.33 31.12 0.23 -3.23 16 19 C -0.07 -1.79 3.81 -11.02 -0.04 -1.83 16 20 C -0.08 -2.07 5.29 -19.87 -0.11 -2.17 16 21 C -0.13 -2.82 9.71 22.27 0.22 -2.60 16 22 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 23 C -0.13 -2.89 10.05 22.27 0.22 -2.67 16 24 C -0.13 -3.47 10.05 22.27 0.22 -3.24 16 25 C -0.13 -3.93 8.61 22.27 0.19 -3.74 16 26 C -0.12 -4.05 5.07 31.12 0.16 -3.90 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 2.54 8.11 -2.39 -0.02 2.52 16 31 H 0.08 2.29 7.61 -2.39 -0.02 2.28 16 32 H 0.04 1.69 7.17 -2.39 -0.02 1.68 16 33 H 0.03 1.32 6.34 -2.39 -0.02 1.30 16 34 H 0.26 13.91 8.31 -92.70 -0.77 13.13 16 35 H 0.42 10.04 8.80 -96.75 -0.85 9.19 16 36 H 0.08 3.38 7.08 -2.39 -0.02 3.36 16 37 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.09 2.49 7.72 -2.39 -0.02 2.47 16 39 H 0.11 2.47 8.07 -2.39 -0.02 2.45 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 42 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 44 H 0.11 3.66 6.66 -2.91 -0.02 3.64 16 45 H 0.08 3.22 6.31 -2.39 -0.02 3.21 16 46 H 0.06 2.19 7.49 -2.39 -0.02 2.17 16 Total: -1.00 -63.26 377.60 -0.97 -64.24 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.08 Total: 33.59 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 3.81 Total: -34.09 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -2.14 Total: -123.39 kcal Atomic # 8 Polarization: -81.94 SS G_CDS: -4.26 Total: -86.21 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.10 kcal Atomic # 16 Polarization: 103.10 SS G_CDS: -0.34 Total: 102.76 kcal Total: -63.26 -0.97 -64.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337054222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.118 kcal (2) G-P(sol) polarization free energy of solvation -63.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds