Wall clock time and date at job start Tue Mar 31 2020 21:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46907 * 2 1 4 4 C 1.46500 * 119.99829 * 273.08647 * 3 2 1 5 5 C 1.50696 * 109.47116 * 84.25726 * 4 3 2 6 6 H 1.08005 * 120.00085 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00163 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99870 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47475 * 89.99677 * 9 7 5 11 11 H 1.48501 * 109.47234 * 209.99851 * 9 7 5 12 12 H 1.48507 * 109.47243 * 329.99667 * 9 7 5 13 13 S 1.65597 * 119.99936 * 93.09466 * 3 2 1 14 14 O 1.42102 * 106.39637 * 197.04044 * 13 3 2 15 15 O 1.42100 * 106.39923 * 329.95491 * 13 3 2 16 16 N 1.65594 * 107.22081 * 83.50016 * 13 3 2 17 17 C 1.46681 * 121.33478 * 273.51437 * 16 13 3 18 18 C 1.50814 * 109.67180 * 135.58805 * 17 16 13 19 19 C 1.38839 * 117.80319 * 191.53273 * 18 17 16 20 20 C 1.37955 * 120.50370 * 180.49149 * 19 18 17 21 21 C 1.38267 * 119.71778 * 0.07969 * 20 19 18 22 22 C 1.37911 * 119.82781 * 359.72507 * 21 20 19 23 23 C 1.37668 * 122.35046 * 11.59544 * 18 17 16 24 24 C 1.50604 * 122.85851 * 358.48611 * 23 18 17 25 25 C 1.47233 * 121.33390 * 93.23873 * 16 13 3 26 26 H 1.09002 * 109.77487 * 124.60232 * 25 16 13 27 27 C 1.53004 * 109.77375 * 3.81242 * 25 16 13 28 28 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47243 * 300.00405 * 1 2 3 30 30 H 1.09004 * 109.46848 * 60.00410 * 1 2 3 31 31 H 1.09007 * 109.47036 * 239.99927 * 2 1 3 32 32 H 1.08995 * 109.46939 * 119.99807 * 2 1 3 33 33 H 1.09004 * 109.47099 * 204.26017 * 4 3 2 34 34 H 1.09005 * 109.47078 * 324.25643 * 4 3 2 35 35 H 0.96997 * 119.99875 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.44029 * 255.64948 * 17 16 13 37 37 H 1.08998 * 109.43632 * 15.52434 * 17 16 13 38 38 H 1.07999 * 119.74588 * 0.52249 * 19 18 17 39 39 H 1.08000 * 120.13949 * 180.09332 * 20 19 18 40 40 H 1.08000 * 120.08642 * 179.74922 * 21 20 19 41 41 H 1.07995 * 119.70696 * 179.97438 * 22 21 20 42 42 H 1.08995 * 109.20179 * 140.54820 * 24 23 18 43 43 H 1.08998 * 109.20002 * 259.88817 * 24 23 18 44 44 H 1.09002 * 109.47135 * 70.41595 * 27 25 16 45 45 H 1.08999 * 109.47282 * 190.42083 * 27 25 16 46 46 H 1.09007 * 109.46756 * 310.41836 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1980 2.0946 -1.2669 5 6 0.8841 2.6949 -1.6962 6 1 0.0031 2.5583 -1.0865 7 6 0.8063 3.4176 -2.8678 8 7 1.8790 3.5835 -3.6105 9 14 -0.8221 4.1622 -3.3995 10 1 -0.9473 5.5312 -2.8380 11 1 -0.8756 4.2285 -4.8821 12 1 -1.9383 3.3189 -2.9012 13 16 2.3673 2.1361 1.4320 14 8 2.4187 3.5278 1.1497 15 8 1.4987 1.5720 2.4049 16 7 3.9030 1.6887 1.8605 17 6 4.1552 0.4610 2.6225 18 6 5.3264 -0.2766 2.0236 19 6 5.5621 -1.5756 2.4536 20 6 6.6242 -2.2979 1.9502 21 6 7.4608 -1.7228 1.0115 22 6 7.2253 -0.4341 0.5808 23 6 6.1524 0.2937 1.0814 24 6 5.9408 1.6846 0.5439 25 6 5.0704 2.5042 1.4868 26 1 5.6402 2.7634 2.3792 27 6 4.6062 3.7792 0.7797 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9344 2.8876 -1.1361 34 1 2.5459 1.3981 -2.0299 35 1 1.8242 4.0916 -4.4350 36 1 4.3787 0.7163 3.6584 37 1 3.2706 -0.1749 2.5891 38 1 4.9088 -2.0240 3.1873 39 1 6.8012 -3.3085 2.2877 40 1 8.2964 -2.2815 0.6165 41 1 7.8802 0.0134 -0.1521 42 1 6.9073 2.1750 0.4283 43 1 5.4517 1.6227 -0.4282 44 1 4.1224 4.4387 1.5002 45 1 5.4666 4.2865 0.3433 46 1 3.8988 3.5206 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337059341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:50 Heat of formation + Delta-G solvation = -32.669950 kcal Electronic energy + Delta-G solvation = -29409.587008 eV Core-core repulsion = 25619.439329 eV Total energy + Delta-G solvation = -3790.147679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.02355 -37.31658 -36.56394 -36.03831 -35.17238 -33.05985 -32.59153 -31.51095 -30.18689 -29.80274 -26.77607 -26.44767 -25.12057 -22.78559 -22.49613 -22.00379 -21.85706 -20.27295 -18.11832 -17.20229 -16.81666 -16.64212 -16.21470 -15.78560 -15.36994 -15.04653 -14.75102 -14.48552 -14.26277 -13.72575 -13.58336 -13.47721 -13.09855 -13.00248 -12.90330 -12.72358 -12.36816 -12.21390 -12.03422 -11.81307 -11.67502 -11.53884 -11.50592 -11.30580 -11.10735 -11.03614 -10.94772 -10.80727 -10.77698 -10.44881 -10.20808 -9.86139 -9.73505 -9.56110 -9.01113 -8.71162 -8.57429 -8.41700 -8.04950 -6.06134 -4.08985 1.17720 1.31254 1.34087 3.32224 3.38370 3.40786 3.44454 3.69773 4.09777 4.44660 4.59524 4.63846 4.86524 4.92068 4.97749 5.03664 5.14016 5.28325 5.31235 5.35051 5.40957 5.47680 5.57561 5.60438 5.70923 5.80467 5.88109 5.93853 5.97788 6.02132 6.12031 6.17571 6.20685 6.39854 6.42152 6.45517 6.47581 6.66510 6.68241 6.81765 6.90179 6.97035 7.01497 7.30493 7.50599 7.65521 7.92109 8.22179 8.93308 9.55677 11.02388 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.004313 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.576113 B = 6490.463968 C = 6689.151365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.138 3.862 3 N -0.991 5.991 4 C 0.254 3.746 5 C -0.526 4.526 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.776 3.224 14 O -0.956 6.956 15 O -0.996 6.996 16 N -1.010 6.010 17 C 0.168 3.832 18 C -0.092 4.092 19 C -0.116 4.116 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.057 4.057 24 C -0.099 4.099 25 C 0.158 3.842 26 H 0.075 0.925 27 C -0.181 4.181 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.136 -9.613 10.134 17.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.012 3.988 3 N -0.833 5.833 4 C 0.132 3.868 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.787 3.213 14 O -0.940 6.940 15 O -0.980 6.980 16 N -0.847 5.847 17 C 0.042 3.958 18 C -0.093 4.093 19 C -0.134 4.134 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.057 4.057 24 C -0.137 4.137 25 C 0.052 3.948 26 H 0.093 0.907 27 C -0.239 4.239 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.078 0.922 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.604 -8.925 10.454 17.360 hybrid contribution -0.506 -0.013 -0.694 0.859 sum 10.097 -8.938 9.760 16.647 Atomic orbital electron populations 1.22287 0.96330 1.00850 1.03804 1.20917 0.94735 0.82392 1.00788 1.57809 1.78519 1.23055 1.23876 1.19184 0.97498 0.91309 0.78785 1.21528 0.95645 1.32733 1.06611 0.91953 1.24910 0.96651 0.95961 0.96371 1.69912 1.28123 1.40993 1.14399 0.86576 0.83947 0.79887 0.77516 1.20473 1.21225 1.19826 1.02281 0.72090 0.74038 0.72907 1.93753 1.85862 1.29957 1.84453 1.93515 1.63269 1.80481 1.60687 1.58682 1.24627 1.32662 1.68745 1.20091 0.96242 0.84800 0.94707 1.19870 0.97200 0.94574 0.97679 1.21039 0.98225 0.93749 1.00414 1.21004 0.95640 0.99725 0.98021 1.21042 0.99632 0.95391 0.97877 1.21197 0.97742 0.94771 1.00186 1.19533 0.94290 0.96209 0.95661 1.20904 1.00826 0.91775 1.00212 1.20847 0.86230 0.90443 0.97295 0.90660 1.22869 1.01677 0.95895 1.03443 0.93157 0.92558 0.90310 0.91087 0.92903 0.93665 0.94976 0.92760 0.90369 0.89036 0.85991 0.86218 0.86309 0.86132 0.89832 0.89249 0.89579 0.92217 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.89 37.16 0.37 -2.75 16 2 C 0.14 2.45 6.06 -4.04 -0.02 2.42 16 3 N -0.99 -20.27 2.85 -115.66 -0.33 -20.59 16 4 C 0.25 6.13 5.16 -5.20 -0.03 6.11 16 5 C -0.53 -14.25 8.52 -34.44 -0.29 -14.54 16 6 H 0.06 1.70 6.80 -52.48 -0.36 1.34 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.47 13.29 55.43 0.74 -24.74 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 S 2.78 54.98 5.65 -107.50 -0.61 54.37 16 14 O -0.96 -21.53 11.83 -57.17 -0.68 -22.20 16 15 O -1.00 -20.92 16.03 -57.17 -0.92 -21.84 16 16 N -1.01 -15.81 3.32 -108.26 -0.36 -16.17 16 17 C 0.17 2.21 6.09 -5.04 -0.03 2.18 16 18 C -0.09 -1.15 5.82 -104.55 -0.61 -1.76 16 19 C -0.12 -1.25 9.62 -39.46 -0.38 -1.63 16 20 C -0.13 -1.25 10.05 -39.67 -0.40 -1.65 16 21 C -0.12 -1.23 10.04 -39.69 -0.40 -1.63 16 22 C -0.12 -1.36 9.59 -39.43 -0.38 -1.74 16 23 C -0.06 -0.72 5.76 -104.60 -0.60 -1.32 16 24 C -0.10 -1.28 5.18 -28.31 -0.15 -1.42 16 25 C 0.16 2.24 3.47 -67.90 -0.24 2.01 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 C -0.18 -2.98 7.48 37.16 0.28 -2.70 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.06 7.73 -51.93 -0.40 0.66 16 30 H 0.08 1.58 6.55 -51.93 -0.34 1.24 16 31 H 0.07 1.19 7.99 -51.92 -0.41 0.78 16 32 H 0.05 0.81 7.15 -51.93 -0.37 0.44 16 33 H 0.05 1.15 4.98 -51.93 -0.26 0.89 16 34 H 0.03 0.80 8.00 -51.93 -0.42 0.39 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.18 6.81 -51.93 -0.35 0.83 16 38 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.16 8.05 -52.49 -0.42 0.74 16 42 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 43 H 0.09 1.30 8.06 -51.93 -0.42 0.88 16 44 H 0.09 1.50 6.77 -51.93 -0.35 1.15 16 45 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 46 H 0.09 1.89 3.42 -51.93 -0.18 1.72 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -31.62 367.45 -11.41 -43.03 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.80 Total: 2.85 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.98 Total: -16.77 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.05 Total: -61.50 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.59 Total: -44.04 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.61 Total: 54.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.62 -11.41 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337059341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.359 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds