Wall clock time and date at job start Tue Mar 31 2020 21:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46907 * 2 1 4 4 C 1.46500 * 119.99829 * 273.08647 * 3 2 1 5 5 C 1.50696 * 109.47116 * 84.25726 * 4 3 2 6 6 H 1.08005 * 120.00085 * 359.97438 * 5 4 3 7 7 C 1.37884 * 120.00163 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99870 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47475 * 89.99677 * 9 7 5 11 11 H 1.48501 * 109.47234 * 209.99851 * 9 7 5 12 12 H 1.48507 * 109.47243 * 329.99667 * 9 7 5 13 13 S 1.65597 * 119.99936 * 93.09466 * 3 2 1 14 14 O 1.42102 * 106.39637 * 197.04044 * 13 3 2 15 15 O 1.42100 * 106.39923 * 329.95491 * 13 3 2 16 16 N 1.65594 * 107.22081 * 83.50016 * 13 3 2 17 17 C 1.46681 * 121.33478 * 273.51437 * 16 13 3 18 18 C 1.50814 * 109.67180 * 135.58805 * 17 16 13 19 19 C 1.38839 * 117.80319 * 191.53273 * 18 17 16 20 20 C 1.37955 * 120.50370 * 180.49149 * 19 18 17 21 21 C 1.38267 * 119.71778 * 0.07969 * 20 19 18 22 22 C 1.37911 * 119.82781 * 359.72507 * 21 20 19 23 23 C 1.37668 * 122.35046 * 11.59544 * 18 17 16 24 24 C 1.50604 * 122.85851 * 358.48611 * 23 18 17 25 25 C 1.47233 * 121.33390 * 93.23873 * 16 13 3 26 26 H 1.09002 * 109.77487 * 124.60232 * 25 16 13 27 27 C 1.53004 * 109.77375 * 3.81242 * 25 16 13 28 28 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47243 * 300.00405 * 1 2 3 30 30 H 1.09004 * 109.46848 * 60.00410 * 1 2 3 31 31 H 1.09007 * 109.47036 * 239.99927 * 2 1 3 32 32 H 1.08995 * 109.46939 * 119.99807 * 2 1 3 33 33 H 1.09004 * 109.47099 * 204.26017 * 4 3 2 34 34 H 1.09005 * 109.47078 * 324.25643 * 4 3 2 35 35 H 0.96997 * 119.99875 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.44029 * 255.64948 * 17 16 13 37 37 H 1.08998 * 109.43632 * 15.52434 * 17 16 13 38 38 H 1.07999 * 119.74588 * 0.52249 * 19 18 17 39 39 H 1.08000 * 120.13949 * 180.09332 * 20 19 18 40 40 H 1.08000 * 120.08642 * 179.74922 * 21 20 19 41 41 H 1.07995 * 119.70696 * 179.97438 * 22 21 20 42 42 H 1.08995 * 109.20179 * 140.54820 * 24 23 18 43 43 H 1.08998 * 109.20002 * 259.88817 * 24 23 18 44 44 H 1.09002 * 109.47135 * 70.41595 * 27 25 16 45 45 H 1.08999 * 109.47282 * 190.42083 * 27 25 16 46 46 H 1.09007 * 109.46756 * 310.41836 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1980 2.0946 -1.2669 5 6 0.8841 2.6949 -1.6962 6 1 0.0031 2.5583 -1.0865 7 6 0.8063 3.4176 -2.8678 8 7 1.8790 3.5835 -3.6105 9 14 -0.8221 4.1622 -3.3995 10 1 -0.9473 5.5312 -2.8380 11 1 -0.8756 4.2285 -4.8821 12 1 -1.9383 3.3189 -2.9012 13 16 2.3673 2.1361 1.4320 14 8 2.4187 3.5278 1.1497 15 8 1.4987 1.5720 2.4049 16 7 3.9030 1.6887 1.8605 17 6 4.1552 0.4610 2.6225 18 6 5.3264 -0.2766 2.0236 19 6 5.5621 -1.5756 2.4536 20 6 6.6242 -2.2979 1.9502 21 6 7.4608 -1.7228 1.0115 22 6 7.2253 -0.4341 0.5808 23 6 6.1524 0.2937 1.0814 24 6 5.9408 1.6846 0.5439 25 6 5.0704 2.5042 1.4868 26 1 5.6402 2.7634 2.3792 27 6 4.6062 3.7792 0.7797 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.9344 2.8876 -1.1361 34 1 2.5459 1.3981 -2.0299 35 1 1.8242 4.0916 -4.4350 36 1 4.3787 0.7163 3.6584 37 1 3.2706 -0.1749 2.5891 38 1 4.9088 -2.0240 3.1873 39 1 6.8012 -3.3085 2.2877 40 1 8.2964 -2.2815 0.6165 41 1 7.8802 0.0134 -0.1521 42 1 6.9073 2.1750 0.4283 43 1 5.4517 1.6227 -0.4282 44 1 4.1224 4.4387 1.5002 45 1 5.4666 4.2865 0.3433 46 1 3.8988 3.5206 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337059341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:49 Heat of formation + Delta-G solvation = -51.565091 kcal Electronic energy + Delta-G solvation = -29410.406363 eV Core-core repulsion = 25619.439329 eV Total energy + Delta-G solvation = -3790.967034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.94566 -38.73295 -37.84346 -37.66713 -36.81423 -34.63453 -34.07559 -32.46484 -31.46840 -31.15780 -28.65844 -27.57379 -26.14008 -24.66442 -23.55873 -23.43030 -22.89649 -21.32933 -19.59723 -18.76047 -18.58258 -17.83759 -17.67758 -17.06924 -16.59921 -16.37406 -16.08937 -15.69129 -15.42006 -15.26704 -14.80312 -14.73443 -14.60987 -14.31390 -14.18725 -13.97819 -13.83778 -13.58337 -13.43656 -13.23012 -13.03535 -12.93020 -12.87386 -12.79833 -12.78189 -12.60978 -12.37004 -12.20007 -12.02202 -11.89837 -11.75248 -11.56938 -11.50366 -11.07022 -10.52760 -10.14496 -9.78782 -9.57021 -9.43205 -8.16876 -6.26117 -0.35168 0.48287 0.52817 1.38534 1.41079 1.49677 2.00188 2.40811 2.60517 2.87944 3.14239 3.35692 3.52010 3.77807 3.85995 3.97029 4.05445 4.12792 4.24720 4.33994 4.39015 4.43111 4.47160 4.56304 4.60477 4.68229 4.70213 4.73957 4.76829 4.91584 4.95194 4.97782 5.12670 5.16989 5.19848 5.21343 5.31071 5.46403 5.50634 5.56015 5.65009 5.67106 5.68618 5.81303 5.84348 6.01615 6.16634 6.17354 6.81710 7.41291 8.90665 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.004313 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.576113 B = 6490.463968 C = 6689.151365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.129 3.871 3 N -0.996 5.996 4 C 0.270 3.730 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.922 5.922 9 Si 0.947 3.053 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.267 1.267 13 S 2.786 3.214 14 O -0.990 6.990 15 O -1.010 7.010 16 N -1.004 6.004 17 C 0.161 3.839 18 C -0.106 4.106 19 C -0.120 4.120 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.077 4.077 24 C -0.093 4.093 25 C 0.159 3.841 26 H 0.102 0.898 27 C -0.180 4.180 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.019 0.981 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.132 0.868 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.299 -11.518 11.134 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.837 5.837 4 C 0.147 3.853 5 C -0.578 4.578 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.563 5.563 9 Si 0.773 3.227 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.192 1.192 13 S 2.797 3.203 14 O -0.974 6.974 15 O -0.994 6.994 16 N -0.844 5.844 17 C 0.036 3.964 18 C -0.108 4.108 19 C -0.138 4.138 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.077 4.077 24 C -0.132 4.132 25 C 0.053 3.947 26 H 0.120 0.880 27 C -0.238 4.238 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.100 0.900 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.750 -10.852 11.463 19.678 hybrid contribution -0.782 0.507 -0.940 1.324 sum 10.968 -10.344 10.523 18.386 Atomic orbital electron populations 1.22244 0.96522 1.02540 1.01642 1.21172 0.94667 0.81275 1.02510 1.57730 1.79313 1.23966 1.22663 1.18743 0.95835 0.90774 0.79948 1.21834 0.96500 1.32824 1.06637 0.92817 1.25638 0.99669 0.96483 0.96587 1.70001 1.29725 1.41735 1.14802 0.85719 0.80530 0.78885 0.77579 1.20597 1.20137 1.19176 1.01781 0.72774 0.73235 0.72487 1.93725 1.86665 1.32222 1.84833 1.93485 1.64563 1.80551 1.60802 1.58329 1.23447 1.33927 1.68675 1.20349 0.96921 0.83710 0.95374 1.19881 0.97053 0.95448 0.98413 1.21293 0.98823 0.93028 1.00680 1.21370 0.94863 1.00774 0.97313 1.21388 1.00199 0.95029 0.97501 1.21394 0.97549 0.95408 1.00477 1.19581 0.95401 0.96116 0.96605 1.20827 1.01264 0.92547 0.98531 1.20980 0.85794 0.89419 0.98469 0.87993 1.22750 1.01578 0.97193 1.02242 0.89587 0.94003 0.93015 0.90303 0.90142 0.94996 0.96319 0.92575 0.88454 0.88925 0.84055 0.83611 0.83996 0.85031 0.87559 0.91692 0.91006 0.90023 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.06 9.89 71.98 0.71 -5.35 16 2 C 0.13 4.53 6.06 86.38 0.52 5.05 16 3 N -1.00 -41.64 2.85 -519.83 -1.48 -43.12 16 4 C 0.27 13.58 5.16 85.63 0.44 14.02 16 5 C -0.54 -30.08 8.52 25.60 0.22 -29.86 16 6 H 0.05 3.02 6.80 -2.91 -0.02 3.00 16 7 C 0.02 0.88 5.46 84.66 0.46 1.34 16 8 N -0.92 -53.66 13.29 21.45 0.28 -53.38 16 9 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 S 2.79 112.24 5.65 -56.49 -0.32 111.92 16 14 O -0.99 -46.40 11.83 -128.00 -1.51 -47.91 16 15 O -1.01 -42.49 16.03 -128.00 -2.05 -44.54 16 16 N -1.00 -30.94 3.32 -496.42 -1.65 -32.59 16 17 C 0.16 3.98 6.09 85.63 0.52 4.50 16 18 C -0.11 -2.44 5.82 -19.82 -0.12 -2.56 16 19 C -0.12 -2.22 9.62 22.35 0.22 -2.00 16 20 C -0.13 -2.04 10.05 22.21 0.22 -1.82 16 21 C -0.12 -2.11 10.04 22.20 0.22 -1.89 16 22 C -0.13 -2.64 9.59 22.37 0.21 -2.43 16 23 C -0.08 -1.82 5.76 -19.85 -0.11 -1.94 16 24 C -0.09 -2.34 5.18 29.57 0.15 -2.19 16 25 C 0.16 4.41 3.47 44.61 0.15 4.57 16 26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 27 C -0.18 -6.06 7.48 71.98 0.54 -5.52 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.04 1.58 7.73 -2.39 -0.02 1.56 16 30 H 0.05 2.10 6.55 -2.38 -0.02 2.08 16 31 H 0.08 2.62 7.99 -2.38 -0.02 2.60 16 32 H 0.08 2.36 7.15 -2.39 -0.02 2.34 16 33 H 0.03 1.72 4.98 -2.38 -0.01 1.70 16 34 H 0.02 0.98 8.00 -2.38 -0.02 0.96 16 35 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 2.23 6.81 -2.39 -0.02 2.22 16 38 H 0.14 1.98 8.05 -2.91 -0.02 1.95 16 39 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.13 2.26 8.05 -2.91 -0.02 2.24 16 42 H 0.11 2.11 8.11 -2.39 -0.02 2.09 16 43 H 0.06 1.94 8.06 -2.39 -0.02 1.92 16 44 H 0.07 2.59 6.77 -2.39 -0.02 2.57 16 45 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 46 H 0.06 2.48 3.42 -2.38 -0.01 2.47 16 Total: -1.00 -69.67 367.45 0.64 -69.03 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.98 Total: 19.94 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 4.37 Total: -26.07 kcal Atomic # 7 Polarization: -126.25 SS G_CDS: -2.85 Total: -129.10 kcal Atomic # 8 Polarization: -88.88 SS G_CDS: -3.57 Total: -92.45 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 112.24 SS G_CDS: -0.32 Total: 111.92 kcal Total: -69.67 0.64 -69.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337059341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.460 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds