Wall clock time and date at job start Tue Mar 31 2020 21:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47198 * 2 1 4 4 C 1.46499 * 119.99902 * 276.51269 * 3 2 1 5 5 C 1.50701 * 109.46755 * 274.99707 * 4 3 2 6 6 H 1.07993 * 120.00476 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99771 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00125 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99947 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47433 * 60.00062 * 9 7 5 11 11 H 1.48501 * 109.47109 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47373 * 299.99631 * 9 7 5 13 13 S 1.65598 * 120.00072 * 96.50962 * 3 2 1 14 14 O 1.42103 * 106.39919 * 339.97222 * 13 3 2 15 15 O 1.42093 * 106.40501 * 207.05243 * 13 3 2 16 16 N 1.65594 * 107.21812 * 93.50982 * 13 3 2 17 17 C 1.46503 * 119.99982 * 66.33104 * 16 13 3 18 18 H 1.08999 * 115.54784 * 0.21925 * 17 16 13 19 19 C 1.53002 * 117.49829 * 145.89016 * 17 16 13 20 20 C 1.53001 * 60.00044 * 107.51654 * 19 17 16 21 21 H 1.08996 * 117.50087 * 107.48881 * 20 19 17 22 22 C 1.53003 * 117.49528 * 252.51510 * 20 19 17 23 23 C 1.50700 * 109.46581 * 243.62191 * 22 20 19 24 24 C 1.38235 * 119.99781 * 269.72130 * 23 22 20 25 25 C 1.38239 * 120.00017 * 179.74718 * 24 23 22 26 26 C 1.38231 * 119.99944 * 0.55058 * 25 24 23 27 27 C 1.38233 * 119.99983 * 359.70600 * 26 25 24 28 28 C 1.38229 * 120.00322 * 90.00184 * 23 22 20 29 29 H 1.09000 * 109.47109 * 65.00972 * 1 2 3 30 30 H 1.08994 * 109.47076 * 185.01115 * 1 2 3 31 31 H 1.08995 * 109.46723 * 305.00714 * 1 2 3 32 32 H 1.09003 * 109.47136 * 240.00250 * 2 1 3 33 33 H 1.09001 * 109.47495 * 120.00038 * 2 1 3 34 34 H 1.08996 * 109.47349 * 34.99846 * 4 3 2 35 35 H 1.09004 * 109.46962 * 155.00032 * 4 3 2 36 36 H 0.96994 * 119.99735 * 180.02562 * 8 7 5 37 37 H 0.97007 * 120.00428 * 246.33455 * 16 13 3 38 38 H 1.09004 * 117.49557 * 215.00177 * 19 17 16 39 39 H 1.08995 * 117.49721 * 0.02562 * 19 17 16 40 40 H 1.09000 * 109.47186 * 3.61549 * 22 20 19 41 41 H 1.08992 * 109.47460 * 123.61889 * 22 20 19 42 42 H 1.08005 * 120.00214 * 0.02562 * 24 23 22 43 43 H 1.08005 * 120.00178 * 180.27740 * 25 24 23 44 44 H 1.08005 * 120.00265 * 179.72313 * 26 25 24 45 45 H 1.08001 * 120.00177 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.00188 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1269 2.1198 -1.2605 5 6 3.4476 1.8055 -1.9147 6 1 4.1370 1.1235 -1.4394 7 6 3.7759 2.3887 -3.1203 8 7 2.9366 3.2196 -3.6990 9 14 5.4126 1.9986 -3.9315 10 1 5.4953 0.5410 -4.2038 11 1 5.5232 2.7482 -5.2086 12 1 6.5209 2.3968 -3.0269 13 16 2.4477 2.1077 1.4249 14 8 1.8131 1.3684 2.4593 15 8 2.2566 3.5032 1.2374 16 7 4.0764 1.8807 1.6195 17 6 5.0201 2.5173 0.6973 18 1 4.5719 3.1268 -0.0874 19 6 6.3644 2.9752 1.2666 20 6 6.2982 1.7501 0.3525 21 1 6.6908 1.8549 -0.6589 22 6 6.4931 0.3763 0.9973 23 6 7.7384 -0.2665 0.4432 24 6 7.6612 -1.0675 -0.6808 25 6 8.8044 -1.6529 -1.1922 26 6 10.0229 -1.4464 -0.5730 27 6 10.0993 -0.6497 0.5541 28 6 8.9570 -0.0597 1.0621 29 1 -0.3633 0.4342 -0.9315 30 1 -0.3633 -1.0237 0.0898 31 1 -0.3632 0.5895 0.8417 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3137 1.8268 -1.9245 35 1 2.0657 3.1897 -1.0612 36 1 3.1674 3.6295 -4.5472 37 1 4.4057 1.3263 2.3442 38 1 6.8006 3.8861 0.8565 39 1 6.5468 2.8025 2.3272 40 1 6.5935 0.4923 2.0764 41 1 5.6309 -0.2535 0.7782 42 1 6.7085 -1.2325 -1.1620 43 1 8.7448 -2.2752 -2.0729 44 1 10.9154 -1.9074 -0.9699 45 1 11.0513 -0.4880 1.0376 46 1 9.0167 0.5628 1.9426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337105727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:14 Heat of formation + Delta-G solvation = -38.626870 kcal Electronic energy + Delta-G solvation = -28417.539580 eV Core-core repulsion = 24627.133590 eV Total energy + Delta-G solvation = -3790.405990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.38205 -37.76074 -36.63586 -36.02128 -35.21551 -32.89760 -32.71909 -31.25597 -30.84317 -29.94602 -26.94715 -26.64134 -23.15323 -22.55830 -21.90654 -21.70440 -21.53149 -20.05699 -18.87101 -17.29375 -16.84220 -16.68577 -16.36578 -15.74369 -15.29722 -15.17196 -15.06078 -14.46722 -14.39473 -13.83476 -13.39309 -13.36792 -13.00970 -12.93706 -12.86175 -12.40841 -12.21948 -12.04441 -11.98653 -11.74732 -11.59453 -11.57140 -11.40319 -11.33251 -11.28732 -11.05197 -10.96949 -10.94622 -10.83786 -10.49780 -10.39431 -10.08757 -9.76913 -9.60059 -8.88564 -8.78629 -8.52510 -8.41721 -8.07253 -6.14095 -4.20200 1.28110 1.39654 1.43677 3.22248 3.29102 3.30300 3.50082 3.81497 4.10038 4.23800 4.32680 4.76950 4.88221 4.97861 5.00949 5.13354 5.18038 5.25826 5.28275 5.38599 5.44608 5.50106 5.57298 5.64453 5.66518 5.76649 5.85563 5.89424 5.94917 6.07446 6.09572 6.11325 6.17035 6.32500 6.48085 6.53789 6.57186 6.63825 6.66299 6.72824 6.79627 7.05241 7.26572 7.36701 7.46217 7.65855 7.84220 8.12995 8.86290 9.45517 10.93647 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.004887 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.122474 B = 5727.795390 C = 6997.338343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.243 3.757 5 C -0.540 4.540 6 H 0.069 0.931 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.272 1.272 13 S 2.788 3.212 14 O -1.001 7.001 15 O -0.979 6.979 16 N -1.099 6.099 17 C 0.117 3.883 18 H 0.157 0.843 19 C -0.196 4.196 20 C -0.153 4.153 21 H 0.111 0.889 22 C -0.049 4.049 23 C -0.070 4.070 24 C -0.114 4.114 25 C -0.120 4.120 26 C -0.131 4.131 27 C -0.123 4.123 28 C -0.117 4.117 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.038 0.962 35 H 0.049 0.951 36 H 0.265 0.735 37 H 0.405 0.595 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 -7.786 7.840 14.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.121 3.879 5 C -0.579 4.579 6 H 0.087 0.913 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.197 1.197 13 S 2.796 3.204 14 O -0.985 6.985 15 O -0.962 6.962 16 N -0.853 5.853 17 C 0.009 3.991 18 H 0.174 0.826 19 C -0.235 4.235 20 C -0.174 4.174 21 H 0.129 0.871 22 C -0.086 4.086 23 C -0.070 4.070 24 C -0.132 4.132 25 C -0.138 4.138 26 C -0.149 4.149 27 C -0.141 4.141 28 C -0.135 4.135 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.237 0.763 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.331 -7.061 8.117 13.607 hybrid contribution 1.491 -0.671 -0.722 1.787 sum 9.822 -7.732 7.395 14.523 Atomic orbital electron populations 1.22186 0.96993 1.01262 1.02298 1.20968 0.93603 0.82884 1.02133 1.57685 1.78128 1.22795 1.24568 1.19218 0.97605 0.91919 0.79181 1.21599 1.02865 1.27674 1.05756 0.91304 1.24924 0.96864 0.94901 0.96954 1.69924 1.35716 1.29277 1.17704 0.86766 0.84342 0.78565 0.78979 1.20182 1.21434 1.19738 1.01671 0.72435 0.73656 0.72631 1.93548 1.74010 1.73960 1.56987 1.93583 1.84830 1.31639 1.86150 1.55616 1.25717 1.63852 1.40079 1.21612 0.84435 0.98736 0.94309 0.82580 1.23553 1.02288 0.98750 0.98950 1.22689 1.03280 0.91325 1.00108 0.87080 1.20117 0.94933 0.94732 0.98864 1.19910 0.95131 0.96474 0.95439 1.21197 0.98930 0.97138 0.95967 1.21155 0.92794 1.00026 0.99780 1.21090 0.97603 0.99664 0.96527 1.21093 0.98189 0.98013 0.96794 1.21032 0.92208 0.99936 1.00280 0.92101 0.92402 0.92868 0.90280 0.91770 0.94399 0.93287 0.92555 0.76295 0.88399 0.89011 0.91264 0.90129 0.85723 0.86280 0.86529 0.86462 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.23 37.16 0.38 -2.22 16 2 C 0.13 2.19 6.10 -4.04 -0.02 2.16 16 3 N -0.99 -19.35 2.83 -115.66 -0.33 -19.68 16 4 C 0.24 5.67 5.44 -5.19 -0.03 5.64 16 5 C -0.54 -12.92 7.33 -34.44 -0.25 -13.18 16 6 H 0.07 1.57 7.12 -52.49 -0.37 1.19 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 9 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 S 2.79 53.32 6.10 -107.50 -0.66 52.67 16 14 O -1.00 -19.77 16.96 -57.17 -0.97 -20.74 16 15 O -0.98 -22.18 16.46 -57.17 -0.94 -23.12 16 16 N -1.10 -17.40 5.75 -4.89 -0.03 -17.42 16 17 C 0.12 1.96 5.17 -67.93 -0.35 1.61 16 18 H 0.16 3.11 6.68 -51.93 -0.35 2.76 16 19 C -0.20 -2.71 10.10 -26.73 -0.27 -2.98 16 20 C -0.15 -2.30 5.63 -90.62 -0.51 -2.81 16 21 H 0.11 1.89 8.07 -51.93 -0.42 1.47 16 22 C -0.05 -0.64 4.68 -27.88 -0.13 -0.77 16 23 C -0.07 -0.91 5.09 -104.63 -0.53 -1.45 16 24 C -0.11 -1.55 9.70 -39.58 -0.38 -1.93 16 25 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 26 C -0.13 -1.46 10.05 -39.59 -0.40 -1.85 16 27 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 28 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 29 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 33 H 0.06 0.97 7.46 -51.93 -0.39 0.58 16 34 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 35 H 0.05 1.27 6.96 -51.93 -0.36 0.91 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.41 5.27 8.26 -34.47 -0.28 4.99 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 40 H 0.07 0.77 7.76 -51.93 -0.40 0.37 16 41 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 42 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 43 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 392.80 15.07 5.92 5.92 Total: -1.00 -29.95 392.80 -12.26 -42.21 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.19 Total: 10.53 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.78 Total: -21.54 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.38 Total: -60.67 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.91 Total: -43.86 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 53.32 SS G_CDS: -0.66 Total: 52.67 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.95 -12.26 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337105727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.584 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds