Wall clock time and date at job start Tue Mar 31 2020 21:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47198 * 2 1 4 4 C 1.46499 * 119.99902 * 276.51269 * 3 2 1 5 5 C 1.50701 * 109.46755 * 274.99707 * 4 3 2 6 6 H 1.07993 * 120.00476 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99771 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00125 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99947 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47433 * 60.00062 * 9 7 5 11 11 H 1.48501 * 109.47109 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47373 * 299.99631 * 9 7 5 13 13 S 1.65598 * 120.00072 * 96.50962 * 3 2 1 14 14 O 1.42103 * 106.39919 * 339.97222 * 13 3 2 15 15 O 1.42093 * 106.40501 * 207.05243 * 13 3 2 16 16 N 1.65594 * 107.21812 * 93.50982 * 13 3 2 17 17 C 1.46503 * 119.99982 * 66.33104 * 16 13 3 18 18 H 1.08999 * 115.54784 * 0.21925 * 17 16 13 19 19 C 1.53002 * 117.49829 * 145.89016 * 17 16 13 20 20 C 1.53001 * 60.00044 * 107.51654 * 19 17 16 21 21 H 1.08996 * 117.50087 * 107.48881 * 20 19 17 22 22 C 1.53003 * 117.49528 * 252.51510 * 20 19 17 23 23 C 1.50700 * 109.46581 * 243.62191 * 22 20 19 24 24 C 1.38235 * 119.99781 * 269.72130 * 23 22 20 25 25 C 1.38239 * 120.00017 * 179.74718 * 24 23 22 26 26 C 1.38231 * 119.99944 * 0.55058 * 25 24 23 27 27 C 1.38233 * 119.99983 * 359.70600 * 26 25 24 28 28 C 1.38229 * 120.00322 * 90.00184 * 23 22 20 29 29 H 1.09000 * 109.47109 * 65.00972 * 1 2 3 30 30 H 1.08994 * 109.47076 * 185.01115 * 1 2 3 31 31 H 1.08995 * 109.46723 * 305.00714 * 1 2 3 32 32 H 1.09003 * 109.47136 * 240.00250 * 2 1 3 33 33 H 1.09001 * 109.47495 * 120.00038 * 2 1 3 34 34 H 1.08996 * 109.47349 * 34.99846 * 4 3 2 35 35 H 1.09004 * 109.46962 * 155.00032 * 4 3 2 36 36 H 0.96994 * 119.99735 * 180.02562 * 8 7 5 37 37 H 0.97007 * 120.00428 * 246.33455 * 16 13 3 38 38 H 1.09004 * 117.49557 * 215.00177 * 19 17 16 39 39 H 1.08995 * 117.49721 * 0.02562 * 19 17 16 40 40 H 1.09000 * 109.47186 * 3.61549 * 22 20 19 41 41 H 1.08992 * 109.47460 * 123.61889 * 22 20 19 42 42 H 1.08005 * 120.00214 * 0.02562 * 24 23 22 43 43 H 1.08005 * 120.00178 * 180.27740 * 25 24 23 44 44 H 1.08005 * 120.00265 * 179.72313 * 26 25 24 45 45 H 1.08001 * 120.00177 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.00188 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1269 2.1198 -1.2605 5 6 3.4476 1.8055 -1.9147 6 1 4.1370 1.1235 -1.4394 7 6 3.7759 2.3887 -3.1203 8 7 2.9366 3.2196 -3.6990 9 14 5.4126 1.9986 -3.9315 10 1 5.4953 0.5410 -4.2038 11 1 5.5232 2.7482 -5.2086 12 1 6.5209 2.3968 -3.0269 13 16 2.4477 2.1077 1.4249 14 8 1.8131 1.3684 2.4593 15 8 2.2566 3.5032 1.2374 16 7 4.0764 1.8807 1.6195 17 6 5.0201 2.5173 0.6973 18 1 4.5719 3.1268 -0.0874 19 6 6.3644 2.9752 1.2666 20 6 6.2982 1.7501 0.3525 21 1 6.6908 1.8549 -0.6589 22 6 6.4931 0.3763 0.9973 23 6 7.7384 -0.2665 0.4432 24 6 7.6612 -1.0675 -0.6808 25 6 8.8044 -1.6529 -1.1922 26 6 10.0229 -1.4464 -0.5730 27 6 10.0993 -0.6497 0.5541 28 6 8.9570 -0.0597 1.0621 29 1 -0.3633 0.4342 -0.9315 30 1 -0.3633 -1.0237 0.0898 31 1 -0.3632 0.5895 0.8417 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3137 1.8268 -1.9245 35 1 2.0657 3.1897 -1.0612 36 1 3.1674 3.6295 -4.5472 37 1 4.4057 1.3263 2.3442 38 1 6.8006 3.8861 0.8565 39 1 6.5468 2.8025 2.3272 40 1 6.5935 0.4923 2.0764 41 1 5.6309 -0.2535 0.7782 42 1 6.7085 -1.2325 -1.1620 43 1 8.7448 -2.2752 -2.0729 44 1 10.9154 -1.9074 -0.9699 45 1 11.0513 -0.4880 1.0376 46 1 9.0167 0.5628 1.9426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337105727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:13 Heat of formation + Delta-G solvation = -56.244176 kcal Electronic energy + Delta-G solvation = -28418.303524 eV Core-core repulsion = 24627.133590 eV Total energy + Delta-G solvation = -3791.169934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.32739 -38.93087 -38.25029 -37.62822 -36.87504 -34.64556 -33.96707 -32.41984 -31.71037 -31.49791 -28.45897 -27.91330 -24.90064 -23.47568 -23.27961 -22.94177 -22.63624 -21.23538 -20.31923 -18.81330 -18.54926 -18.15182 -17.60878 -17.21898 -16.71065 -16.31984 -16.14544 -15.98160 -15.58247 -15.30922 -14.79692 -14.63271 -14.24364 -14.04894 -13.93304 -13.75297 -13.62342 -13.49830 -13.35099 -13.21508 -13.14423 -13.02078 -12.88960 -12.80817 -12.74186 -12.67318 -12.30585 -12.20206 -12.04519 -11.84469 -11.82676 -11.73048 -11.52399 -10.81726 -10.51738 -9.92110 -9.77056 -9.74419 -9.46655 -8.12204 -6.22733 -0.27093 0.50575 0.55119 1.43455 1.45013 1.50703 1.99381 2.44027 2.62229 2.91721 3.00450 3.20730 3.44674 3.74255 3.98600 3.98758 4.11148 4.13095 4.19444 4.27010 4.28743 4.34985 4.45918 4.52030 4.54307 4.69922 4.70420 4.72560 4.92203 4.95916 4.99693 5.01324 5.17844 5.20380 5.25210 5.30264 5.39169 5.41505 5.47778 5.59666 5.63542 5.66965 5.80779 5.82025 5.93052 6.16853 6.18978 6.24715 6.90493 7.46222 8.95934 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.004887 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.122474 B = 5727.795390 C = 6997.338343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.994 5.994 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.081 0.919 7 C 0.019 3.981 8 N -0.929 5.929 9 Si 0.940 3.060 10 H -0.269 1.269 11 H -0.296 1.296 12 H -0.261 1.261 13 S 2.803 3.197 14 O -1.004 7.004 15 O -1.017 7.017 16 N -1.081 6.081 17 C 0.089 3.911 18 H 0.119 0.881 19 C -0.171 4.171 20 C -0.145 4.145 21 H 0.088 0.912 22 C -0.044 4.044 23 C -0.084 4.084 24 C -0.139 4.139 25 C -0.132 4.132 26 C -0.134 4.134 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.048 0.952 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.262 0.738 37 H 0.422 0.578 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.113 0.887 43 H 0.130 0.870 44 H 0.140 0.860 45 H 0.144 0.856 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.616 -9.462 9.478 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.835 5.835 4 C 0.135 3.865 5 C -0.565 4.565 6 H 0.099 0.901 7 C -0.181 4.181 8 N -0.569 5.569 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.222 1.222 12 H -0.186 1.186 13 S 2.811 3.189 14 O -0.988 6.988 15 O -1.001 7.001 16 N -0.839 5.839 17 C -0.020 4.020 18 H 0.136 0.864 19 C -0.210 4.210 20 C -0.166 4.166 21 H 0.107 0.893 22 C -0.081 4.081 23 C -0.084 4.084 24 C -0.157 4.157 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.143 4.143 28 C -0.140 4.140 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.037 0.963 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.257 0.743 38 H 0.121 0.879 39 H 0.139 0.861 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.148 0.852 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.890 -8.775 9.786 17.070 hybrid contribution 0.716 -0.181 -1.183 1.395 sum 11.606 -8.956 8.603 16.998 Atomic orbital electron populations 1.22181 0.96051 1.03088 1.01266 1.21240 0.94528 0.81326 1.03275 1.57589 1.78889 1.23832 1.23174 1.18754 0.96860 0.90522 0.80332 1.21820 1.02860 1.26619 1.05164 0.90139 1.25627 0.99677 0.94949 0.97820 1.70057 1.37671 1.31013 1.18203 0.85878 0.81177 0.78498 0.77797 1.19369 1.22212 1.18580 1.01038 0.73010 0.72661 0.72184 1.93535 1.74695 1.73738 1.56850 1.93535 1.85760 1.34218 1.86595 1.55117 1.24257 1.64087 1.40467 1.21397 0.85290 1.00383 0.94921 0.86360 1.23670 0.98645 0.98345 1.00336 1.22622 1.01207 0.93119 0.99663 0.89345 1.20097 0.94898 0.93107 1.00041 1.19973 0.95725 0.96990 0.95732 1.21292 0.99101 0.98480 0.96815 1.21388 0.92974 1.00230 1.00401 1.21433 0.97979 0.99355 0.96422 1.21465 0.99097 0.97154 0.96573 1.21296 0.91886 1.00048 1.00763 0.93325 0.89144 0.93711 0.90180 0.89496 0.96307 0.96538 0.92868 0.74262 0.87920 0.86150 0.88912 0.90815 0.86879 0.85191 0.84174 0.83866 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 10.23 71.98 0.74 -4.29 16 2 C 0.12 3.98 6.10 86.38 0.53 4.50 16 3 N -0.99 -39.32 2.83 -519.83 -1.47 -40.79 16 4 C 0.26 12.57 5.44 85.63 0.47 13.04 16 5 C -0.53 -25.70 7.33 25.60 0.19 -25.52 16 6 H 0.08 3.68 7.12 -2.91 -0.02 3.66 16 7 C 0.02 0.97 5.46 84.66 0.46 1.43 16 8 N -0.93 -52.68 13.29 21.45 0.28 -52.40 16 9 Si 0.94 41.08 29.54 68.60 2.03 43.11 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 13 S 2.80 107.16 6.10 -56.49 -0.34 106.81 16 14 O -1.00 -38.50 16.96 -128.00 -2.17 -40.67 16 15 O -1.02 -47.44 16.46 -128.00 -2.11 -49.55 16 16 N -1.08 -32.99 5.75 -169.37 -0.97 -33.96 16 17 C 0.09 2.90 5.17 44.99 0.23 3.13 16 18 H 0.12 4.86 6.68 -2.39 -0.02 4.85 16 19 C -0.17 -4.31 10.10 30.60 0.31 -4.00 16 20 C -0.15 -4.14 5.63 -10.79 -0.06 -4.20 16 21 H 0.09 2.95 8.07 -2.39 -0.02 2.93 16 22 C -0.04 -1.05 4.68 29.85 0.14 -0.91 16 23 C -0.08 -2.04 5.09 -19.87 -0.10 -2.14 16 24 C -0.14 -3.61 9.70 22.27 0.22 -3.39 16 25 C -0.13 -2.99 10.05 22.27 0.22 -2.77 16 26 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 27 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 28 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 29 H 0.05 1.56 8.12 -2.39 -0.02 1.54 16 30 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 33 H 0.09 2.45 7.46 -2.39 -0.02 2.43 16 34 H 0.02 0.98 8.09 -2.39 -0.02 0.96 16 35 H 0.02 0.91 6.96 -2.39 -0.02 0.90 16 36 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 37 H 0.42 9.96 8.26 -96.74 -0.80 9.16 16 38 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 39 H 0.12 2.37 8.03 -2.39 -0.02 2.35 16 40 H 0.09 1.73 7.76 -2.39 -0.02 1.71 16 41 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 42 H 0.11 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 45 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 46 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -66.10 392.80 -0.58 -66.68 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.17 Total: 32.67 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 4.00 Total: -31.90 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -2.16 Total: -127.15 kcal Atomic # 8 Polarization: -85.95 SS G_CDS: -4.28 Total: -90.22 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 107.16 SS G_CDS: -0.34 Total: 106.81 kcal Total: -66.10 -0.58 -66.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337105727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.433 kcal (2) G-P(sol) polarization free energy of solvation -66.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds