Wall clock time and date at job start Tue Mar 31 2020 21:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47187 * 2 1 4 4 C 1.46510 * 120.00012 * 275.00202 * 3 2 1 5 5 C 1.50703 * 109.46569 * 274.99895 * 4 3 2 6 6 H 1.07996 * 120.00126 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99546 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99755 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99852 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46964 * 59.99699 * 9 7 5 11 11 H 1.48500 * 109.47091 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47076 * 299.99982 * 9 7 5 13 13 S 1.65597 * 120.00311 * 94.99843 * 3 2 1 14 14 O 1.42105 * 106.39945 * 336.45942 * 13 3 2 15 15 O 1.42106 * 106.40253 * 203.54396 * 13 3 2 16 16 N 1.65599 * 107.22126 * 90.00051 * 13 3 2 17 17 C 1.46498 * 119.99549 * 64.99951 * 16 13 3 18 18 H 1.08994 * 115.56716 * 0.69290 * 17 16 13 19 19 C 1.53004 * 117.49642 * 146.38019 * 17 16 13 20 20 C 1.52999 * 117.49960 * 215.00164 * 17 16 13 21 21 H 1.09010 * 117.51817 * 359.97438 * 20 17 16 22 22 C 1.52998 * 117.50294 * 145.02595 * 20 17 16 23 23 C 1.50701 * 109.47174 * 185.01465 * 22 20 17 24 24 C 1.38235 * 119.99808 * 89.99739 * 23 22 20 25 25 C 1.38243 * 119.99602 * 179.97438 * 24 23 22 26 26 C 1.38232 * 120.00069 * 0.09581 * 25 24 23 27 27 C 1.38234 * 119.99866 * 359.86117 * 26 25 24 28 28 C 1.38230 * 119.99865 * 269.97485 * 23 22 20 29 29 H 1.08993 * 109.47574 * 300.00094 * 1 2 3 30 30 H 1.08999 * 109.47164 * 60.00353 * 1 2 3 31 31 H 1.08999 * 109.46967 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47530 * 240.00300 * 2 1 3 33 33 H 1.08999 * 109.47164 * 119.99647 * 2 1 3 34 34 H 1.08993 * 109.46815 * 34.99398 * 4 3 2 35 35 H 1.08992 * 109.47284 * 154.99819 * 4 3 2 36 36 H 0.97008 * 119.99831 * 180.02562 * 8 7 5 37 37 H 0.97000 * 120.00103 * 245.00566 * 16 13 3 38 38 H 1.09001 * 117.49913 * 0.02562 * 19 17 16 39 39 H 1.08997 * 117.49935 * 214.97932 * 19 17 16 40 40 H 1.08993 * 109.47576 * 65.00886 * 22 20 17 41 41 H 1.09001 * 109.46567 * 305.00841 * 22 20 17 42 42 H 1.08000 * 120.00616 * 359.70324 * 24 23 22 43 43 H 1.08001 * 119.99556 * 179.97438 * 25 24 23 44 44 H 1.07997 * 119.99666 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99729 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.00371 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4947 1.7888 -1.8823 6 1 4.1723 1.1117 -1.3835 7 6 3.8529 2.3614 -3.0844 8 7 3.0280 3.1863 -3.6915 9 14 5.5099 1.9654 -3.8506 10 1 5.6003 0.5056 -4.1075 11 1 5.6517 2.7027 -5.1318 12 1 6.5947 2.3727 -2.9218 13 16 2.4121 2.1203 1.4286 14 8 1.6867 1.4416 2.4448 15 8 2.3056 3.5187 1.1997 16 7 4.0143 1.8138 1.7138 17 6 5.0349 2.3525 0.8114 18 1 4.6604 2.9541 -0.0168 19 6 6.3791 2.7521 1.4234 20 6 6.2764 1.4953 0.5568 21 1 6.3344 0.5306 1.0610 22 6 6.8971 1.5481 -0.8406 23 6 8.0243 0.5517 -0.9276 24 6 7.7718 -0.7431 -1.3408 25 6 8.8060 -1.6570 -1.4211 26 6 10.0921 -1.2766 -1.0863 27 6 10.3446 0.0184 -0.6740 28 6 9.3107 0.9325 -0.5946 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3617 1.8097 -1.9453 35 1 2.0921 3.1802 -1.0757 36 1 3.2798 3.5889 -4.5374 37 1 4.2770 1.2776 2.4782 38 1 6.5042 2.6137 2.4973 39 1 6.8888 3.6165 0.9978 40 1 7.2824 2.5500 -1.0295 41 1 6.1385 1.3044 -1.5844 42 1 6.7660 -1.0419 -1.5968 43 1 8.6087 -2.6687 -1.7436 44 1 10.8998 -1.9907 -1.1487 45 1 11.3495 0.3157 -0.4128 46 1 9.5079 1.9441 -0.2718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337105728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:16 Heat of formation + Delta-G solvation = -49.710756 kcal Electronic energy + Delta-G solvation = -28519.842013 eV Core-core repulsion = 24728.955390 eV Total energy + Delta-G solvation = -3790.886624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.32494 -38.89308 -38.24824 -37.62898 -36.88099 -34.65092 -34.33480 -32.28471 -31.71711 -31.50704 -28.48560 -27.83830 -24.89584 -23.47242 -23.30665 -22.95564 -22.60509 -21.44693 -20.41465 -18.70584 -18.54717 -18.17466 -17.77278 -17.33498 -16.85134 -16.35663 -15.93467 -15.89730 -15.46787 -15.36911 -14.80327 -14.57837 -14.32465 -14.13098 -14.07547 -13.72902 -13.65759 -13.56195 -13.33967 -13.21096 -13.15468 -13.01263 -12.92388 -12.82321 -12.70100 -12.62165 -12.25172 -12.16065 -11.98270 -11.83130 -11.73201 -11.58890 -11.50322 -10.79762 -10.45485 -9.90694 -9.77473 -9.75031 -9.45911 -8.11608 -6.22781 -0.28385 0.50271 0.54733 1.45536 1.48406 1.51429 1.97494 2.45030 2.61558 2.92198 2.98940 3.21276 3.44327 3.74947 3.94041 3.99425 4.08102 4.14519 4.19188 4.27038 4.27794 4.35586 4.44978 4.49736 4.53838 4.68283 4.71020 4.72494 4.92507 4.94493 4.99121 5.00303 5.17246 5.19786 5.24509 5.30541 5.36517 5.44431 5.48436 5.59224 5.63662 5.66337 5.81153 5.82537 5.92785 6.17328 6.19619 6.23317 6.90166 7.46237 8.96258 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.004702 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.395671 B = 5953.790590 C = 6943.944131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.994 5.994 4 C 0.257 3.743 5 C -0.528 4.528 6 H 0.085 0.915 7 C 0.021 3.979 8 N -0.930 5.930 9 Si 0.916 3.084 10 H -0.273 1.273 11 H -0.310 1.310 12 H -0.218 1.218 13 S 2.802 3.198 14 O -1.005 7.005 15 O -1.016 7.016 16 N -1.084 6.084 17 C 0.080 3.920 18 H 0.124 0.876 19 C -0.170 4.170 20 C -0.136 4.136 21 H 0.113 0.887 22 C -0.065 4.065 23 C -0.084 4.084 24 C -0.139 4.139 25 C -0.125 4.125 26 C -0.132 4.132 27 C -0.122 4.122 28 C -0.125 4.125 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.422 0.578 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.136 0.864 44 H 0.145 0.855 45 H 0.145 0.855 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.218 -8.966 8.110 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.835 5.835 4 C 0.133 3.867 5 C -0.567 4.567 6 H 0.103 0.897 7 C -0.178 4.178 8 N -0.570 5.570 9 Si 0.742 3.258 10 H -0.199 1.199 11 H -0.238 1.238 12 H -0.141 1.141 13 S 2.810 3.190 14 O -0.989 6.989 15 O -1.000 7.000 16 N -0.842 5.842 17 C -0.028 4.028 18 H 0.141 0.859 19 C -0.209 4.209 20 C -0.156 4.156 21 H 0.131 0.869 22 C -0.102 4.102 23 C -0.084 4.084 24 C -0.157 4.157 25 C -0.143 4.143 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.143 4.143 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.257 0.743 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.163 0.837 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.508 -8.232 8.385 16.447 hybrid contribution 0.473 -0.256 -0.985 1.122 sum 11.981 -8.488 7.400 16.442 Atomic orbital electron populations 1.22195 0.96033 1.03179 1.01313 1.21226 0.94513 0.81311 1.03225 1.57586 1.79193 1.23975 1.22726 1.18786 0.96893 0.90789 0.80193 1.21884 1.02248 1.27117 1.05467 0.89722 1.25620 0.99878 0.94823 0.97508 1.70063 1.37920 1.31516 1.17522 0.86518 0.82963 0.78401 0.77935 1.19891 1.23786 1.14083 1.01080 0.72974 0.72759 0.72183 1.93534 1.71071 1.76160 1.58173 1.93537 1.86621 1.33690 1.86147 1.55186 1.23736 1.67623 1.37691 1.21557 0.84090 1.01777 0.95419 0.85868 1.23699 0.98338 0.98483 1.00397 1.22618 1.00262 0.96493 0.96249 0.86876 1.20668 0.95516 0.98092 0.95900 1.19939 0.95061 0.94602 0.98812 1.21260 0.99761 0.93786 1.00925 1.21389 0.93124 0.99958 0.99851 1.21454 0.97039 0.96953 0.99496 1.21454 0.99714 0.93537 0.99270 1.21268 0.92059 1.00661 1.00329 0.93468 0.93385 0.89152 0.90124 0.89707 0.96316 0.96447 0.92998 0.74290 0.86645 0.87365 0.90733 0.91123 0.86975 0.84578 0.83753 0.83740 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.11 10.24 71.98 0.74 -4.37 16 2 C 0.12 4.04 6.06 86.38 0.52 4.57 16 3 N -0.99 -39.65 2.82 -519.85 -1.47 -41.12 16 4 C 0.26 12.52 5.44 85.63 0.47 12.98 16 5 C -0.53 -25.66 7.31 25.60 0.19 -25.47 16 6 H 0.08 3.81 5.71 -2.91 -0.02 3.79 16 7 C 0.02 1.09 5.46 84.66 0.46 1.55 16 8 N -0.93 -52.89 13.29 21.45 0.28 -52.61 16 9 Si 0.92 39.59 26.86 68.60 1.84 41.43 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.31 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.22 -8.27 4.57 99.48 0.45 -7.82 16 13 S 2.80 108.59 6.08 -56.49 -0.34 108.24 16 14 O -1.01 -39.28 17.11 -128.00 -2.19 -41.47 16 15 O -1.02 -47.84 16.44 -128.00 -2.10 -49.95 16 16 N -1.08 -33.66 6.10 -169.39 -1.03 -34.69 16 17 C 0.08 2.59 5.01 44.99 0.23 2.82 16 18 H 0.12 4.97 6.52 -2.39 -0.02 4.96 16 19 C -0.17 -4.23 10.10 30.60 0.31 -3.92 16 20 C -0.14 -3.75 5.60 -10.79 -0.06 -3.81 16 21 H 0.11 2.89 8.07 -2.38 -0.02 2.87 16 22 C -0.06 -1.97 4.17 29.85 0.12 -1.85 16 23 C -0.08 -2.31 5.09 -19.87 -0.10 -2.41 16 24 C -0.14 -3.78 9.70 22.27 0.22 -3.56 16 25 C -0.13 -2.77 10.05 22.27 0.22 -2.55 16 26 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 27 C -0.12 -2.36 10.05 22.27 0.22 -2.13 16 28 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 33 H 0.08 2.41 7.61 -2.39 -0.02 2.39 16 34 H 0.02 0.98 8.11 -2.39 -0.02 0.96 16 35 H 0.02 0.97 6.91 -2.39 -0.02 0.95 16 36 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 37 H 0.42 10.23 8.96 -96.74 -0.87 9.36 16 38 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.11 2.52 8.03 -2.39 -0.02 2.51 16 40 H 0.07 2.23 7.33 -2.39 -0.02 2.21 16 41 H 0.07 2.52 2.66 -2.39 -0.01 2.51 16 42 H 0.11 3.18 8.06 -2.91 -0.02 3.16 16 43 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -66.23 380.68 -1.17 -67.40 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.13 Total: 35.87 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 3.98 Total: -33.11 kcal Atomic # 7 Polarization: -126.21 SS G_CDS: -2.22 Total: -128.42 kcal Atomic # 8 Polarization: -87.12 SS G_CDS: -4.29 Total: -91.41 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.84 Total: 41.43 kcal Atomic # 16 Polarization: 108.59 SS G_CDS: -0.34 Total: 108.24 kcal Total: -66.23 -1.17 -67.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337105728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.690 kcal (2) G-P(sol) polarization free energy of solvation -66.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds