Wall clock time and date at job start Tue Mar 31 2020 21:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46495 * 119.99960 * 84.99632 * 3 2 1 5 5 C 1.50703 * 109.46880 * 85.00580 * 4 3 2 6 6 H 1.08005 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99808 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47532 * 59.99633 * 9 7 5 11 11 H 1.48499 * 109.47001 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46855 * 299.99420 * 9 7 5 13 13 S 1.65602 * 119.99912 * 265.00474 * 3 2 1 14 14 O 1.42105 * 106.40141 * 203.53891 * 13 3 2 15 15 O 1.42100 * 106.40027 * 336.45243 * 13 3 2 16 16 N 1.65597 * 107.21970 * 89.99809 * 13 3 2 17 17 C 1.46496 * 120.00015 * 65.00221 * 16 13 3 18 18 H 1.08994 * 115.55323 * 359.41445 * 17 16 13 19 19 C 1.52998 * 117.49600 * 213.74484 * 17 16 13 20 20 C 1.53000 * 117.50028 * 145.08707 * 17 16 13 21 21 H 1.09007 * 117.49896 * 359.97438 * 20 17 16 22 22 C 1.53002 * 117.49996 * 214.97703 * 20 17 16 23 23 C 1.50697 * 109.47183 * 174.99822 * 22 20 17 24 24 C 1.38240 * 119.99984 * 269.72626 * 23 22 20 25 25 C 1.38238 * 120.00033 * 179.80994 * 24 23 22 26 26 C 1.38231 * 119.99783 * 0.39891 * 25 24 23 27 27 C 1.38240 * 120.00310 * 359.85580 * 26 25 24 28 28 C 1.38232 * 119.99705 * 359.95599 * 27 26 25 29 29 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 30 30 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 34 34 H 1.09008 * 109.47219 * 205.00149 * 4 3 2 35 35 H 1.08997 * 109.47495 * 325.00411 * 4 3 2 36 36 H 0.96998 * 120.00198 * 180.02562 * 8 7 5 37 37 H 0.96997 * 119.99855 * 244.99171 * 16 13 3 38 38 H 1.08999 * 117.50278 * 359.97438 * 19 17 16 39 39 H 1.09001 * 117.50312 * 144.99722 * 19 17 16 40 40 H 1.08999 * 109.46878 * 295.00242 * 22 20 17 41 41 H 1.09004 * 109.47109 * 54.99940 * 22 20 17 42 42 H 1.08001 * 119.99837 * 359.97438 * 24 23 22 43 43 H 1.07991 * 120.00054 * 180.22860 * 25 24 23 44 44 H 1.08003 * 120.00106 * 179.83081 * 26 25 24 45 45 H 1.07998 * 120.00288 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.00268 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4948 1.7889 1.8823 6 1 4.1721 1.1112 1.3838 7 6 3.8525 2.3607 3.0848 8 7 3.0275 3.1855 3.6919 9 14 5.5090 1.9637 3.8516 10 1 6.5944 2.3710 2.9238 11 1 5.6508 2.7012 5.1327 12 1 5.5986 0.5037 4.1079 13 16 2.4121 2.1202 -1.4287 14 8 3.3283 3.1571 -1.1050 15 8 2.7096 1.0800 -2.3499 16 7 1.0430 2.8642 -1.9894 17 6 0.4513 3.9730 -1.2367 18 1 0.9651 4.2419 -0.3139 19 6 -1.0722 4.1110 -1.2630 20 6 -0.2001 5.1023 -2.0374 21 1 -0.1880 5.0206 -3.1244 22 6 -0.0808 6.5227 -1.4812 23 6 -0.6731 7.4988 -2.4648 24 6 0.1249 8.0676 -3.4398 25 6 -0.4193 8.9600 -4.3445 26 6 -1.7596 9.2898 -4.2690 27 6 -2.5564 8.7250 -3.2907 28 6 -2.0131 7.8297 -2.3884 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.0921 3.1803 1.0755 35 1 1.3617 1.8097 1.9453 36 1 3.2793 3.5880 4.5378 37 1 0.6330 2.5659 -2.8163 38 1 -1.6343 3.3772 -1.8406 39 1 -1.5608 4.4708 -0.3574 40 1 -0.6182 6.5887 -0.5352 41 1 0.9702 6.7624 -1.3195 42 1 1.1728 7.8127 -3.4964 43 1 0.2032 9.4015 -5.1085 44 1 -2.1842 9.9891 -4.9741 45 1 -3.6034 8.9831 -3.2314 46 1 -2.6356 7.3881 -1.6244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337105729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:19 Heat of formation + Delta-G solvation = -37.147605 kcal Electronic energy + Delta-G solvation = -27302.203422 eV Core-core repulsion = 23511.861577 eV Total energy + Delta-G solvation = -3790.341845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.53260 -37.93805 -36.61008 -36.03253 -35.15980 -33.35360 -32.67076 -31.32319 -31.00290 -29.98624 -26.96068 -26.59991 -23.15466 -22.71441 -22.12082 -21.76570 -21.68495 -20.48177 -18.90691 -17.42673 -16.97453 -16.70489 -16.22722 -16.20930 -15.42586 -15.25217 -15.03411 -14.40666 -14.33065 -13.83011 -13.57894 -13.38038 -13.30116 -13.12978 -12.90573 -12.77013 -12.13565 -12.09576 -12.08355 -11.89011 -11.69237 -11.63383 -11.43564 -11.36585 -11.31412 -11.14147 -11.08604 -10.98386 -10.91368 -10.47629 -10.39945 -9.98521 -9.95816 -9.77290 -9.04740 -8.99381 -8.63720 -8.43639 -8.08066 -6.07063 -4.10538 1.18598 1.25920 1.27622 3.33758 3.37270 3.41559 3.46178 3.65538 3.84958 4.14201 4.44644 4.54739 4.74056 4.83757 4.88605 4.92670 4.99205 5.05180 5.16209 5.23792 5.31079 5.35248 5.41064 5.44265 5.46906 5.69544 5.72462 5.75050 5.81705 5.82989 5.93603 5.98226 6.01541 6.23333 6.29072 6.34885 6.37895 6.40256 6.56647 6.60050 6.63248 6.89075 7.10866 7.24807 7.41351 7.62871 7.90871 8.20286 8.91431 9.54654 11.01410 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.003047 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.491784 B = 9186.669480 C =10094.606832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.989 5.989 4 C 0.259 3.741 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.277 1.277 13 S 2.781 3.219 14 O -0.961 6.961 15 O -0.999 6.999 16 N -1.104 6.104 17 C 0.102 3.898 18 H 0.141 0.859 19 C -0.183 4.183 20 C -0.155 4.155 21 H 0.106 0.894 22 C -0.056 4.056 23 C -0.071 4.071 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.408 0.592 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 6.428 -12.495 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.008 4.008 3 N -0.831 5.831 4 C 0.137 3.863 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.789 3.211 14 O -0.944 6.944 15 O -0.983 6.983 16 N -0.858 5.858 17 C -0.007 4.007 18 H 0.159 0.841 19 C -0.223 4.223 20 C -0.175 4.175 21 H 0.124 0.876 22 C -0.094 4.094 23 C -0.071 4.071 24 C -0.135 4.135 25 C -0.138 4.138 26 C -0.148 4.148 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.240 0.760 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.063 6.588 -12.563 18.621 hybrid contribution 0.200 -0.254 0.266 0.418 sum -11.863 6.334 -12.297 18.222 Atomic orbital electron populations 1.22228 0.97197 1.01295 1.02053 1.21134 0.93086 0.83164 1.03457 1.57693 1.80910 1.21445 1.23075 1.19035 0.97377 0.90896 0.79009 1.21456 1.02105 1.27713 1.05528 0.92253 1.24906 0.97312 0.94829 0.96850 1.69894 1.36108 1.30238 1.17256 0.86595 0.84289 0.78412 0.78385 1.20007 1.21200 1.20208 1.01986 0.73289 0.73144 0.72701 1.93636 1.59384 1.57583 1.83832 1.93534 1.83425 1.57410 1.63915 1.55906 1.49139 1.45687 1.35059 1.21481 0.93512 0.88811 0.96872 0.84119 1.23577 0.93979 1.02097 1.02632 1.22755 1.05327 0.90616 0.98833 0.87613 1.20258 1.01906 0.90588 0.96605 1.19902 0.93800 0.96879 0.96504 1.21161 1.00079 0.97169 0.95128 1.21144 0.95372 0.98230 0.99081 1.21117 0.94219 1.00536 0.98928 1.21133 0.99680 0.97519 0.95619 1.21084 0.94772 0.98041 0.99380 0.91936 0.93363 0.92377 0.89745 0.90692 0.94677 0.94647 0.92660 0.76026 0.88660 0.87909 0.90262 0.89825 0.85871 0.86262 0.86449 0.86317 0.86035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.12 2.02 6.40 -4.04 -0.03 1.99 16 3 N -0.99 -19.85 2.82 -115.66 -0.33 -20.18 16 4 C 0.26 6.21 5.10 -5.19 -0.03 6.18 16 5 C -0.53 -14.53 9.38 -34.44 -0.32 -14.86 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -25.49 13.29 55.43 0.74 -24.76 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 S 2.78 54.24 6.08 -107.50 -0.65 53.59 16 14 O -0.96 -22.71 16.87 -57.17 -0.96 -23.67 16 15 O -1.00 -20.63 16.69 -57.17 -0.95 -21.59 16 16 N -1.10 -16.10 6.10 -4.90 -0.03 -16.13 16 17 C 0.10 1.41 6.21 -67.93 -0.42 0.99 16 18 H 0.14 2.24 6.90 -51.93 -0.36 1.89 16 19 C -0.18 -2.00 10.11 -26.70 -0.27 -2.27 16 20 C -0.15 -1.78 5.65 -90.58 -0.51 -2.29 16 21 H 0.11 1.19 8.07 -51.92 -0.42 0.77 16 22 C -0.06 -0.62 5.63 -27.88 -0.16 -0.78 16 23 C -0.07 -0.76 5.09 -104.62 -0.53 -1.30 16 24 C -0.12 -1.24 9.70 -39.58 -0.38 -1.63 16 25 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 26 C -0.13 -1.16 10.05 -39.58 -0.40 -1.56 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 28 C -0.11 -1.14 9.70 -39.58 -0.38 -1.52 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 33 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 34 H 0.04 0.88 6.40 -51.92 -0.33 0.55 16 35 H 0.04 0.86 8.11 -51.93 -0.42 0.44 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.41 4.88 8.96 -34.47 -0.31 4.57 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.04 8.03 -51.93 -0.42 0.62 16 40 H 0.08 0.82 7.82 -51.93 -0.41 0.41 16 41 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 42 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -32.98 397.89 -12.38 -45.35 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.21 Total: 5.15 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -3.95 Total: -20.36 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.38 Total: -61.07 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -1.92 Total: -45.26 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 54.24 SS G_CDS: -0.65 Total: 53.59 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.98 -12.38 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337105729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.205 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds