Wall clock time and date at job start Tue Mar 31 2020 21:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46495 * 119.99960 * 84.99632 * 3 2 1 5 5 C 1.50703 * 109.46880 * 85.00580 * 4 3 2 6 6 H 1.08005 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99808 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47532 * 59.99633 * 9 7 5 11 11 H 1.48499 * 109.47001 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46855 * 299.99420 * 9 7 5 13 13 S 1.65602 * 119.99912 * 265.00474 * 3 2 1 14 14 O 1.42105 * 106.40141 * 203.53891 * 13 3 2 15 15 O 1.42100 * 106.40027 * 336.45243 * 13 3 2 16 16 N 1.65597 * 107.21970 * 89.99809 * 13 3 2 17 17 C 1.46496 * 120.00015 * 65.00221 * 16 13 3 18 18 H 1.08994 * 115.55323 * 359.41445 * 17 16 13 19 19 C 1.52998 * 117.49600 * 213.74484 * 17 16 13 20 20 C 1.53000 * 117.50028 * 145.08707 * 17 16 13 21 21 H 1.09007 * 117.49896 * 359.97438 * 20 17 16 22 22 C 1.53002 * 117.49996 * 214.97703 * 20 17 16 23 23 C 1.50697 * 109.47183 * 174.99822 * 22 20 17 24 24 C 1.38240 * 119.99984 * 269.72626 * 23 22 20 25 25 C 1.38238 * 120.00033 * 179.80994 * 24 23 22 26 26 C 1.38231 * 119.99783 * 0.39891 * 25 24 23 27 27 C 1.38240 * 120.00310 * 359.85580 * 26 25 24 28 28 C 1.38232 * 119.99705 * 359.95599 * 27 26 25 29 29 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 30 30 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 33 33 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 34 34 H 1.09008 * 109.47219 * 205.00149 * 4 3 2 35 35 H 1.08997 * 109.47495 * 325.00411 * 4 3 2 36 36 H 0.96998 * 120.00198 * 180.02562 * 8 7 5 37 37 H 0.96997 * 119.99855 * 244.99171 * 16 13 3 38 38 H 1.08999 * 117.50278 * 359.97438 * 19 17 16 39 39 H 1.09001 * 117.50312 * 144.99722 * 19 17 16 40 40 H 1.08999 * 109.46878 * 295.00242 * 22 20 17 41 41 H 1.09004 * 109.47109 * 54.99940 * 22 20 17 42 42 H 1.08001 * 119.99837 * 359.97438 * 24 23 22 43 43 H 1.07991 * 120.00054 * 180.22860 * 25 24 23 44 44 H 1.08003 * 120.00106 * 179.83081 * 26 25 24 45 45 H 1.07998 * 120.00288 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.00268 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4948 1.7889 1.8823 6 1 4.1721 1.1112 1.3838 7 6 3.8525 2.3607 3.0848 8 7 3.0275 3.1855 3.6919 9 14 5.5090 1.9637 3.8516 10 1 6.5944 2.3710 2.9238 11 1 5.6508 2.7012 5.1327 12 1 5.5986 0.5037 4.1079 13 16 2.4121 2.1202 -1.4287 14 8 3.3283 3.1571 -1.1050 15 8 2.7096 1.0800 -2.3499 16 7 1.0430 2.8642 -1.9894 17 6 0.4513 3.9730 -1.2367 18 1 0.9651 4.2419 -0.3139 19 6 -1.0722 4.1110 -1.2630 20 6 -0.2001 5.1023 -2.0374 21 1 -0.1880 5.0206 -3.1244 22 6 -0.0808 6.5227 -1.4812 23 6 -0.6731 7.4988 -2.4648 24 6 0.1249 8.0676 -3.4398 25 6 -0.4193 8.9600 -4.3445 26 6 -1.7596 9.2898 -4.2690 27 6 -2.5564 8.7250 -3.2907 28 6 -2.0131 7.8297 -2.3884 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.0921 3.1803 1.0755 35 1 1.3617 1.8097 1.9453 36 1 3.2793 3.5880 4.5378 37 1 0.6330 2.5659 -2.8163 38 1 -1.6343 3.3772 -1.8406 39 1 -1.5608 4.4708 -0.3574 40 1 -0.6182 6.5887 -0.5352 41 1 0.9702 6.7624 -1.3195 42 1 1.1728 7.8127 -3.4964 43 1 0.2032 9.4015 -5.1085 44 1 -2.1842 9.9891 -4.9741 45 1 -3.6034 8.9831 -3.2314 46 1 -2.6356 7.3881 -1.6244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337105729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:18 Heat of formation + Delta-G solvation = -57.436815 kcal Electronic energy + Delta-G solvation = -27303.083228 eV Core-core repulsion = 23511.861577 eV Total energy + Delta-G solvation = -3791.221651 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.31164 -38.92880 -38.26030 -37.64990 -36.86640 -34.70003 -34.34816 -32.31147 -31.71214 -31.51179 -28.47543 -27.79498 -24.93975 -23.46323 -23.27628 -23.03548 -22.65585 -21.39618 -20.35067 -19.08243 -18.30044 -18.19196 -17.82836 -17.39892 -16.83063 -16.30350 -16.02116 -15.83591 -15.39136 -15.37710 -14.77338 -14.69874 -14.32786 -14.15222 -13.98261 -13.83390 -13.64624 -13.56385 -13.35436 -13.19754 -13.13819 -13.03515 -12.99101 -12.84268 -12.75952 -12.65164 -12.30798 -12.18320 -12.14609 -11.88986 -11.83478 -11.74713 -11.58392 -10.97036 -10.56804 -9.99957 -9.78064 -9.76989 -9.48848 -8.18601 -6.29291 -0.34598 0.49762 0.55206 1.39396 1.42655 1.49478 2.00415 2.41030 2.60831 2.87222 2.94301 3.12461 3.40207 3.70813 3.85787 3.96110 4.01345 4.09480 4.15183 4.16185 4.24995 4.34702 4.47717 4.49172 4.53366 4.65299 4.70409 4.74047 4.88453 4.93050 4.97137 5.04926 5.16332 5.18917 5.20093 5.24254 5.30146 5.37566 5.43800 5.55254 5.63560 5.67447 5.74017 5.80023 5.91184 6.13869 6.17212 6.18344 6.78124 7.38927 8.88393 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.003047 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.491784 B = 9186.669480 C =10094.606832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.109 3.891 3 N -0.994 5.994 4 C 0.277 3.723 5 C -0.550 4.550 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.279 1.279 11 H -0.276 1.276 12 H -0.265 1.265 13 S 2.797 3.203 14 O -1.009 7.009 15 O -1.011 7.011 16 N -1.084 6.084 17 C 0.067 3.933 18 H 0.113 0.887 19 C -0.156 4.156 20 C -0.140 4.140 21 H 0.112 0.888 22 C -0.056 4.056 23 C -0.084 4.084 24 C -0.137 4.137 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.125 4.125 28 C -0.123 4.123 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.019 0.981 35 H 0.029 0.971 36 H 0.267 0.733 37 H 0.423 0.577 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.987 6.398 -13.415 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.835 5.835 4 C 0.153 3.847 5 C -0.590 4.590 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.190 1.190 13 S 2.806 3.194 14 O -0.992 6.992 15 O -0.995 6.995 16 N -0.843 5.843 17 C -0.041 4.041 18 H 0.131 0.869 19 C -0.196 4.196 20 C -0.161 4.161 21 H 0.130 0.870 22 C -0.093 4.093 23 C -0.084 4.084 24 C -0.155 4.155 25 C -0.146 4.146 26 C -0.151 4.151 27 C -0.143 4.143 28 C -0.141 4.141 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.259 0.741 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.137 0.863 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.159 0.841 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.029 6.530 -13.498 20.534 hybrid contribution 0.757 -0.202 0.479 0.918 sum -13.272 6.327 -13.020 19.639 Atomic orbital electron populations 1.22150 0.94320 1.03179 1.02243 1.21374 0.95544 0.81412 1.03320 1.57567 1.81489 1.22639 1.21807 1.18579 0.95588 0.90306 0.80225 1.21817 1.03469 1.27644 1.06022 0.93294 1.25659 1.00558 0.94786 0.97403 1.69976 1.37551 1.30849 1.17618 0.85725 0.80109 0.78882 0.77703 1.20514 1.20105 1.18985 1.01206 0.73567 0.72403 0.72270 1.93575 1.61990 1.59118 1.84533 1.93505 1.84160 1.57879 1.63984 1.55274 1.48010 1.45497 1.35545 1.21493 0.95661 0.90070 0.96873 0.86885 1.23676 0.91617 1.01344 1.02922 1.22761 1.04147 0.90260 0.98948 0.87025 1.20231 1.01141 0.90721 0.97248 1.19901 0.94476 0.97366 0.96679 1.21292 1.00159 0.98111 0.95905 1.21399 0.96131 0.97928 0.99158 1.21459 0.93956 1.00539 0.99189 1.21461 1.00889 0.96872 0.95105 1.21289 0.94454 0.98368 0.99991 0.92847 0.92023 0.89627 0.90797 0.89928 0.96329 0.95272 0.92408 0.74085 0.86679 0.86831 0.89629 0.91457 0.86284 0.84716 0.84168 0.84071 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 10.24 71.98 0.74 -3.40 16 2 C 0.11 3.67 6.40 86.38 0.55 4.22 16 3 N -0.99 -40.51 2.82 -519.84 -1.47 -41.98 16 4 C 0.28 13.69 5.10 85.64 0.44 14.13 16 5 C -0.55 -31.01 9.38 25.60 0.24 -30.77 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 7 C 0.02 0.89 5.46 84.66 0.46 1.35 16 8 N -0.92 -53.17 13.29 21.45 0.28 -52.88 16 9 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 S 2.80 110.82 6.08 -56.49 -0.34 110.47 16 14 O -1.01 -49.61 16.87 -128.00 -2.16 -51.77 16 15 O -1.01 -41.58 16.69 -128.00 -2.14 -43.72 16 16 N -1.08 -31.12 6.10 -169.40 -1.03 -32.15 16 17 C 0.07 1.86 6.21 44.99 0.28 2.14 16 18 H 0.11 3.81 6.90 -2.39 -0.02 3.79 16 19 C -0.16 -3.09 10.11 30.62 0.31 -2.78 16 20 C -0.14 -3.10 5.65 -10.77 -0.06 -3.16 16 21 H 0.11 2.36 8.07 -2.38 -0.02 2.34 16 22 C -0.06 -1.24 5.63 29.85 0.17 -1.07 16 23 C -0.08 -1.76 5.09 -19.87 -0.10 -1.87 16 24 C -0.14 -2.86 9.70 22.27 0.22 -2.65 16 25 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 26 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 27 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 28 C -0.12 -2.23 9.70 22.27 0.22 -2.02 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 33 H 0.08 2.64 6.91 -2.39 -0.02 2.63 16 34 H 0.02 0.99 6.40 -2.38 -0.02 0.97 16 35 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 36 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 37 H 0.42 9.46 8.96 -96.75 -0.87 8.59 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.11 2.04 8.03 -2.39 -0.02 2.02 16 40 H 0.09 1.74 7.82 -2.39 -0.02 1.72 16 41 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 42 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.13 1.86 8.06 -2.92 -0.02 1.84 16 44 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 46 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -71.72 397.89 -0.60 -72.32 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.10 Total: 24.62 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 4.13 Total: -31.59 kcal Atomic # 7 Polarization: -124.80 SS G_CDS: -2.22 Total: -127.01 kcal Atomic # 8 Polarization: -91.19 SS G_CDS: -4.30 Total: -95.49 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 110.82 SS G_CDS: -0.34 Total: 110.47 kcal Total: -71.72 -0.60 -72.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337105729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.886 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds