Wall clock time and date at job start Tue Mar 31 2020 21:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46702 * 2 1 4 4 C 1.46501 * 119.99633 * 274.99915 * 3 2 1 5 5 C 1.50697 * 109.47329 * 275.00120 * 4 3 2 6 6 H 1.08005 * 119.99889 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00335 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99803 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00445 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47401 * 89.99057 * 9 7 5 11 11 H 1.48502 * 109.47321 * 209.99487 * 9 7 5 12 12 H 1.48506 * 109.46517 * 329.99518 * 9 7 5 13 13 S 1.65591 * 120.00064 * 95.00208 * 3 2 1 14 14 O 1.42098 * 106.40372 * 336.45888 * 13 3 2 15 15 O 1.42099 * 106.40346 * 203.53970 * 13 3 2 16 16 N 1.65607 * 107.21954 * 89.99800 * 13 3 2 17 17 C 1.47225 * 121.32616 * 90.00033 * 16 13 3 18 18 C 1.52783 * 107.92499 * 115.85535 * 17 16 13 19 19 C 1.50602 * 110.85498 * 47.48083 * 18 17 16 20 20 C 1.38979 * 117.62111 * 160.03084 * 19 18 17 21 21 C 1.37917 * 120.57930 * 179.32513 * 20 19 18 22 22 C 1.50692 * 120.08905 * 179.85383 * 21 20 19 23 23 C 1.38267 * 119.82661 * 359.83502 * 21 20 19 24 24 C 1.37966 * 119.71630 * 0.28250 * 23 21 20 25 25 C 1.37667 * 122.86076 * 339.92515 * 19 18 17 26 26 C 1.46676 * 121.32838 * 270.02354 * 16 13 3 27 27 H 1.08995 * 109.47009 * 60.00447 * 1 2 3 28 28 H 1.09007 * 109.46587 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47102 * 299.99991 * 1 2 3 30 30 H 1.09001 * 109.47102 * 240.00009 * 2 1 3 31 31 H 1.08994 * 109.47412 * 119.99908 * 2 1 3 32 32 H 1.09001 * 109.47309 * 35.00284 * 4 3 2 33 33 H 1.09003 * 109.47002 * 155.00248 * 4 3 2 34 34 H 0.97002 * 119.99723 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.76904 * 356.24961 * 17 16 13 36 36 H 1.09004 * 109.76941 * 235.46581 * 17 16 13 37 37 H 1.09001 * 109.20190 * 287.12632 * 18 17 16 38 38 H 1.08998 * 109.20130 * 167.83300 * 18 17 16 39 39 H 1.07992 * 119.71530 * 359.35936 * 20 19 18 40 40 H 1.09005 * 109.47123 * 269.98070 * 22 21 20 41 41 H 1.09000 * 109.47214 * 29.97827 * 22 21 20 42 42 H 1.08996 * 109.47442 * 149.98180 * 22 21 20 43 43 H 1.07992 * 120.14297 * 180.30504 * 23 21 20 44 44 H 1.08002 * 119.74497 * 180.02562 * 24 23 21 45 45 H 1.09006 * 109.43525 * 344.47847 * 26 16 13 46 46 H 1.08997 * 109.44119 * 104.39095 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1087 -1.2640 5 6 3.4946 1.7889 -1.8824 6 1 4.1720 1.1112 -1.3840 7 6 3.8528 2.3614 -3.0845 8 7 3.0277 3.1863 -3.6916 9 14 5.5091 1.9645 -3.8515 10 1 5.3730 0.7817 -4.7391 11 1 5.9785 3.1281 -4.6458 12 1 6.4928 1.6679 -2.7791 13 16 2.4121 2.1203 1.4286 14 8 1.6869 1.4416 2.4447 15 8 2.3055 3.5187 1.1998 16 7 4.0144 1.8138 1.7136 17 6 5.0663 2.7173 1.2190 18 6 5.7781 3.3180 2.4301 19 6 6.1313 2.2481 3.4295 20 6 7.1269 2.5351 4.3558 21 6 7.4891 1.6047 5.3073 22 6 8.5723 1.9263 6.3044 23 6 6.8555 0.3764 5.3443 24 6 5.8686 0.0879 4.4244 25 6 5.5121 1.0189 3.4581 26 6 4.4422 0.6313 2.4686 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3616 1.8097 -1.9453 33 1 2.0920 3.1803 -1.0757 34 1 3.2796 3.5887 -4.5375 35 1 4.6189 3.5124 0.6225 36 1 5.7785 2.1572 0.6130 37 1 5.1236 4.0494 2.9043 38 1 6.6901 3.8151 2.0998 39 1 7.6208 3.4951 4.3307 40 1 9.5384 1.6209 5.9024 41 1 8.5818 2.9991 6.4972 42 1 8.3804 1.3916 7.2346 43 1 7.1317 -0.3540 6.0903 44 1 5.3731 -0.8713 4.4531 45 1 3.5879 0.2115 2.9998 46 1 4.8427 -0.1131 1.7804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337166032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:02 Heat of formation + Delta-G solvation = -61.013124 kcal Electronic energy + Delta-G solvation = -28548.592481 eV Core-core repulsion = 24757.215750 eV Total energy + Delta-G solvation = -3791.376731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.96810 -36.75285 -36.65413 -36.02093 -35.21818 -32.84699 -32.72576 -32.38986 -29.94662 -29.35363 -27.60798 -26.61654 -24.10083 -23.29881 -23.11271 -22.19143 -21.66930 -19.75916 -18.10988 -17.19518 -16.90904 -16.37845 -16.32931 -15.51707 -15.33063 -15.06524 -14.66710 -14.50997 -14.17363 -13.80055 -13.76692 -13.45030 -13.24560 -13.02395 -12.90184 -12.60709 -12.38696 -12.11030 -12.05350 -12.03244 -11.94882 -11.69757 -11.52775 -11.42880 -11.34276 -11.14382 -11.07309 -10.95926 -10.86476 -10.51484 -10.47249 -10.38959 -10.04616 -9.78202 -8.88556 -8.62771 -8.50617 -8.36170 -8.05864 -6.12465 -4.19155 1.21830 1.33706 1.38874 3.23250 3.31014 3.31936 3.44776 3.69388 4.09541 4.34809 4.64028 4.72320 4.83868 4.89104 4.98715 5.18296 5.21308 5.22013 5.31787 5.40982 5.42147 5.44501 5.54813 5.62013 5.67648 5.72774 5.75014 5.78295 5.80814 5.91675 6.05975 6.08646 6.12652 6.30198 6.34864 6.36062 6.43129 6.57246 6.63549 6.66124 6.75528 6.89403 7.02693 7.34729 7.44028 7.64682 7.84817 8.14303 8.86138 9.47033 10.95463 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011947 B = 0.004392 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.150067 B = 6374.236425 C = 7708.051389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.538 4.538 6 H 0.063 0.937 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.787 3.213 14 O -0.997 6.997 15 O -0.975 6.975 16 N -1.005 6.005 17 C 0.130 3.870 18 C -0.100 4.100 19 C -0.057 4.057 20 C -0.123 4.123 21 C -0.092 4.092 22 C -0.111 4.111 23 C -0.126 4.126 24 C -0.111 4.111 25 C -0.089 4.089 26 C 0.161 3.839 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.999 -5.409 14.673 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.123 3.877 5 C -0.578 4.578 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.797 3.203 14 O -0.981 6.981 15 O -0.959 6.959 16 N -0.842 5.842 17 C 0.005 3.995 18 C -0.139 4.139 19 C -0.058 4.058 20 C -0.141 4.141 21 C -0.092 4.092 22 C -0.168 4.168 23 C -0.144 4.144 24 C -0.130 4.130 25 C -0.091 4.091 26 C 0.035 3.965 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.138 0.862 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.117 0.883 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.360 -4.760 15.028 16.999 hybrid contribution 1.261 -0.496 -0.865 1.607 sum 7.620 -5.256 14.163 16.920 Atomic orbital electron populations 1.22209 0.96905 1.01403 1.02404 1.20975 0.93683 0.82948 1.02036 1.57794 1.78277 1.22940 1.24258 1.19198 0.97353 0.92193 0.78984 1.21551 1.02203 1.27954 1.06074 0.91917 1.24946 0.97169 0.94826 0.96879 1.69937 1.35976 1.29806 1.17027 0.86595 0.84043 0.77922 0.79419 1.20691 1.21140 1.19769 1.01729 0.72309 0.73465 0.72823 1.93520 1.70345 1.76505 1.57732 1.93566 1.85582 1.30746 1.86010 1.58247 1.25002 1.33656 1.67267 1.21310 0.90306 0.93364 0.94529 1.20902 1.01273 0.96310 0.95370 1.19541 0.95259 0.94500 0.96478 1.21054 0.98080 0.99365 0.95555 1.19798 0.97913 0.94422 0.97099 1.20754 0.96749 1.01990 0.97314 1.20878 0.97270 0.96569 0.99658 1.21026 0.97872 0.99156 0.94947 1.19831 0.98160 0.94112 0.96970 1.20155 0.96601 0.87584 0.92175 0.92055 0.92322 0.92661 0.90193 0.92066 0.94403 0.93216 0.92600 0.87794 0.90684 0.90108 0.89740 0.86235 0.91382 0.91718 0.91749 0.86245 0.85899 0.88349 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.13 2.24 6.06 -4.04 -0.02 2.21 16 3 N -0.99 -20.27 2.82 -115.66 -0.33 -20.60 16 4 C 0.24 5.96 5.43 -5.19 -0.03 5.93 16 5 C -0.54 -13.67 9.38 -34.44 -0.32 -13.99 16 6 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.94 13.29 55.43 0.74 -24.20 16 9 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 S 2.79 56.10 6.12 -107.50 -0.66 55.44 16 14 O -1.00 -20.40 15.75 -57.17 -0.90 -21.30 16 15 O -0.97 -22.60 15.45 -57.17 -0.88 -23.48 16 16 N -1.00 -17.37 3.32 -115.05 -0.38 -17.75 16 17 C 0.13 2.17 6.40 -3.76 -0.02 2.15 16 18 C -0.10 -1.40 5.87 -28.04 -0.16 -1.57 16 19 C -0.06 -0.80 5.76 -104.60 -0.60 -1.40 16 20 C -0.12 -1.48 9.25 -39.42 -0.36 -1.85 16 21 C -0.09 -1.02 5.87 -104.73 -0.61 -1.63 16 22 C -0.11 -0.90 10.02 36.00 0.36 -0.54 16 23 C -0.13 -1.37 9.71 -39.67 -0.39 -1.76 16 24 C -0.11 -1.33 9.62 -39.46 -0.38 -1.71 16 25 C -0.09 -1.25 5.82 -104.56 -0.61 -1.85 16 26 C 0.16 2.35 6.31 -5.05 -0.03 2.32 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.37 8.11 -51.93 -0.42 0.94 16 31 H 0.06 0.93 7.61 -51.93 -0.40 0.53 16 32 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.05 1.34 6.91 -51.93 -0.36 0.98 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.10 1.92 7.16 -51.93 -0.37 1.55 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.00 8.10 -51.93 -0.42 0.57 16 39 H 0.12 1.23 8.05 -52.49 -0.42 0.80 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 42 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.20 8.05 -52.49 -0.42 0.78 16 45 H 0.10 1.39 6.95 -51.93 -0.36 1.03 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 385.22 15.07 5.81 5.81 Total: -1.00 -31.16 385.22 -11.90 -43.06 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.36 Total: 2.15 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.91 Total: -14.37 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.03 Total: -62.55 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -1.78 Total: -44.78 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 56.10 SS G_CDS: -0.66 Total: 55.44 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.16 -11.90 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337166032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.951 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds