Wall clock time and date at job start Tue Mar 31 2020 21:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46702 * 2 1 4 4 C 1.46501 * 119.99633 * 274.99915 * 3 2 1 5 5 C 1.50697 * 109.47329 * 275.00120 * 4 3 2 6 6 H 1.08005 * 119.99889 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00335 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99803 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00445 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47401 * 89.99057 * 9 7 5 11 11 H 1.48502 * 109.47321 * 209.99487 * 9 7 5 12 12 H 1.48506 * 109.46517 * 329.99518 * 9 7 5 13 13 S 1.65591 * 120.00064 * 95.00208 * 3 2 1 14 14 O 1.42098 * 106.40372 * 336.45888 * 13 3 2 15 15 O 1.42099 * 106.40346 * 203.53970 * 13 3 2 16 16 N 1.65607 * 107.21954 * 89.99800 * 13 3 2 17 17 C 1.47225 * 121.32616 * 90.00033 * 16 13 3 18 18 C 1.52783 * 107.92499 * 115.85535 * 17 16 13 19 19 C 1.50602 * 110.85498 * 47.48083 * 18 17 16 20 20 C 1.38979 * 117.62111 * 160.03084 * 19 18 17 21 21 C 1.37917 * 120.57930 * 179.32513 * 20 19 18 22 22 C 1.50692 * 120.08905 * 179.85383 * 21 20 19 23 23 C 1.38267 * 119.82661 * 359.83502 * 21 20 19 24 24 C 1.37966 * 119.71630 * 0.28250 * 23 21 20 25 25 C 1.37667 * 122.86076 * 339.92515 * 19 18 17 26 26 C 1.46676 * 121.32838 * 270.02354 * 16 13 3 27 27 H 1.08995 * 109.47009 * 60.00447 * 1 2 3 28 28 H 1.09007 * 109.46587 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47102 * 299.99991 * 1 2 3 30 30 H 1.09001 * 109.47102 * 240.00009 * 2 1 3 31 31 H 1.08994 * 109.47412 * 119.99908 * 2 1 3 32 32 H 1.09001 * 109.47309 * 35.00284 * 4 3 2 33 33 H 1.09003 * 109.47002 * 155.00248 * 4 3 2 34 34 H 0.97002 * 119.99723 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.76904 * 356.24961 * 17 16 13 36 36 H 1.09004 * 109.76941 * 235.46581 * 17 16 13 37 37 H 1.09001 * 109.20190 * 287.12632 * 18 17 16 38 38 H 1.08998 * 109.20130 * 167.83300 * 18 17 16 39 39 H 1.07992 * 119.71530 * 359.35936 * 20 19 18 40 40 H 1.09005 * 109.47123 * 269.98070 * 22 21 20 41 41 H 1.09000 * 109.47214 * 29.97827 * 22 21 20 42 42 H 1.08996 * 109.47442 * 149.98180 * 22 21 20 43 43 H 1.07992 * 120.14297 * 180.30504 * 23 21 20 44 44 H 1.08002 * 119.74497 * 180.02562 * 24 23 21 45 45 H 1.09006 * 109.43525 * 344.47847 * 26 16 13 46 46 H 1.08997 * 109.44119 * 104.39095 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1087 -1.2640 5 6 3.4946 1.7889 -1.8824 6 1 4.1720 1.1112 -1.3840 7 6 3.8528 2.3614 -3.0845 8 7 3.0277 3.1863 -3.6916 9 14 5.5091 1.9645 -3.8515 10 1 5.3730 0.7817 -4.7391 11 1 5.9785 3.1281 -4.6458 12 1 6.4928 1.6679 -2.7791 13 16 2.4121 2.1203 1.4286 14 8 1.6869 1.4416 2.4447 15 8 2.3055 3.5187 1.1998 16 7 4.0144 1.8138 1.7136 17 6 5.0663 2.7173 1.2190 18 6 5.7781 3.3180 2.4301 19 6 6.1313 2.2481 3.4295 20 6 7.1269 2.5351 4.3558 21 6 7.4891 1.6047 5.3073 22 6 8.5723 1.9263 6.3044 23 6 6.8555 0.3764 5.3443 24 6 5.8686 0.0879 4.4244 25 6 5.5121 1.0189 3.4581 26 6 4.4422 0.6313 2.4686 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3616 1.8097 -1.9453 33 1 2.0920 3.1803 -1.0757 34 1 3.2796 3.5887 -4.5375 35 1 4.6189 3.5124 0.6225 36 1 5.7785 2.1572 0.6130 37 1 5.1236 4.0494 2.9043 38 1 6.6901 3.8151 2.0998 39 1 7.6208 3.4951 4.3307 40 1 9.5384 1.6209 5.9024 41 1 8.5818 2.9991 6.4972 42 1 8.3804 1.3916 7.2346 43 1 7.1317 -0.3540 6.0903 44 1 5.3731 -0.8713 4.4531 45 1 3.5879 0.2115 2.9998 46 1 4.8427 -0.1131 1.7804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337166032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:01 Heat of formation + Delta-G solvation = -79.051964 kcal Electronic energy + Delta-G solvation = -28549.374704 eV Core-core repulsion = 24757.215750 eV Total energy + Delta-G solvation = -3792.158954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.93571 -38.42736 -37.78502 -37.67499 -36.92530 -34.67942 -33.83395 -33.39366 -31.53787 -30.37335 -28.57502 -28.43136 -25.13466 -24.93631 -24.40392 -23.26586 -23.10849 -20.88758 -19.56905 -18.74801 -18.51827 -18.21649 -17.65539 -16.92847 -16.49920 -16.27932 -16.09795 -15.61902 -15.46581 -15.25022 -14.86181 -14.66642 -14.48340 -14.40343 -13.90139 -13.81709 -13.70239 -13.57766 -13.52625 -13.39138 -13.32792 -13.08042 -12.92841 -12.81523 -12.72597 -12.69693 -12.66197 -12.25761 -12.14394 -12.08633 -11.87193 -11.73656 -11.60773 -11.55391 -10.57041 -10.14624 -9.76953 -9.58512 -9.28846 -8.15030 -6.28706 -0.37587 0.42233 0.48931 1.44232 1.45386 1.55214 1.92638 2.43237 2.51318 2.79490 3.16782 3.30312 3.62478 3.76488 3.96519 4.00632 4.04244 4.10225 4.23575 4.32761 4.42073 4.43430 4.48750 4.57777 4.60911 4.62992 4.69922 4.73609 4.84154 4.87823 4.96618 4.99020 5.05406 5.09955 5.13180 5.24069 5.26435 5.33412 5.38756 5.45476 5.52710 5.59842 5.72606 5.77577 5.79720 5.98632 6.12212 6.15286 6.83557 7.41597 8.93228 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011947 B = 0.004392 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.150067 B = 6374.236425 C = 7708.051389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.996 5.996 4 C 0.261 3.739 5 C -0.537 4.537 6 H 0.072 0.928 7 C 0.013 3.987 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.259 1.259 13 S 2.797 3.203 14 O -1.000 7.000 15 O -1.013 7.013 16 N -1.002 6.002 17 C 0.128 3.872 18 C -0.094 4.094 19 C -0.079 4.079 20 C -0.131 4.131 21 C -0.094 4.094 22 C -0.110 4.110 23 C -0.127 4.127 24 C -0.115 4.115 25 C -0.112 4.112 26 C 0.157 3.843 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.020 0.980 33 H 0.016 0.984 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.101 0.899 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.301 -7.448 16.410 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.837 5.837 4 C 0.138 3.862 5 C -0.576 4.576 6 H 0.090 0.910 7 C -0.187 4.187 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.183 1.183 13 S 2.807 3.193 14 O -0.985 6.985 15 O -0.997 6.997 16 N -0.842 5.842 17 C 0.003 3.997 18 C -0.133 4.133 19 C -0.079 4.079 20 C -0.149 4.149 21 C -0.094 4.094 22 C -0.166 4.166 23 C -0.145 4.145 24 C -0.134 4.134 25 C -0.114 4.114 26 C 0.032 3.968 27 H 0.066 0.934 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.152 0.848 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.164 0.836 44 H 0.160 0.840 45 H 0.120 0.880 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.650 -6.827 16.790 20.084 hybrid contribution 0.544 0.102 -1.303 1.415 sum 9.194 -6.726 15.488 19.226 Atomic orbital electron populations 1.22199 0.95880 1.03341 1.01275 1.21275 0.94683 0.81249 1.03309 1.57716 1.79045 1.24138 1.22766 1.18725 0.96675 0.90691 0.80146 1.21797 1.02437 1.27461 1.05938 0.91002 1.25782 1.00678 0.94664 0.97532 1.70073 1.38060 1.31202 1.17553 0.85562 0.79909 0.77552 0.78707 1.20107 1.21369 1.18325 1.01225 0.72935 0.72537 0.72575 1.93502 1.71070 1.76308 1.57575 1.93513 1.86465 1.33273 1.86448 1.58001 1.23890 1.34855 1.67437 1.21326 0.89980 0.92706 0.95690 1.20838 1.01644 0.96426 0.94383 1.19614 0.96501 0.94524 0.97254 1.21255 0.97752 1.00442 0.95488 1.20205 0.98134 0.94115 0.96969 1.20808 0.96073 1.02707 0.97059 1.21254 0.96487 0.97099 0.99664 1.21280 0.98150 0.99553 0.94403 1.19884 0.98615 0.94996 0.97878 1.20368 0.97227 0.86608 0.92552 0.93422 0.88853 0.93531 0.90003 0.89597 0.96187 0.96643 0.92632 0.90509 0.90320 0.90981 0.87621 0.84826 0.90338 0.91094 0.90387 0.83586 0.83955 0.88049 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.18 10.24 71.98 0.74 -4.44 16 2 C 0.12 4.05 6.06 86.38 0.52 4.57 16 3 N -1.00 -41.48 2.82 -519.83 -1.47 -42.95 16 4 C 0.26 13.22 5.43 85.63 0.47 13.69 16 5 C -0.54 -27.63 9.38 25.60 0.24 -27.39 16 6 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 7 C 0.01 0.68 5.46 84.65 0.46 1.15 16 8 N -0.93 -53.50 13.29 21.45 0.28 -53.22 16 9 Si 0.96 41.48 29.54 68.60 2.03 43.50 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 S 2.80 114.99 6.12 -56.49 -0.35 114.65 16 14 O -1.00 -40.84 15.75 -128.00 -2.02 -42.85 16 15 O -1.01 -49.28 15.45 -128.00 -1.98 -51.25 16 16 N -1.00 -34.74 3.32 -517.90 -1.72 -36.46 16 17 C 0.13 4.34 6.40 86.17 0.55 4.89 16 18 C -0.09 -2.63 5.87 29.75 0.17 -2.45 16 19 C -0.08 -2.10 5.76 -19.85 -0.11 -2.21 16 20 C -0.13 -2.92 9.25 22.37 0.21 -2.71 16 21 C -0.09 -1.80 5.87 -19.94 -0.12 -1.92 16 22 C -0.11 -1.39 10.02 71.23 0.71 -0.67 16 23 C -0.13 -2.37 9.71 22.21 0.22 -2.16 16 24 C -0.12 -2.47 9.62 22.35 0.22 -2.25 16 25 C -0.11 -2.96 5.82 -19.82 -0.12 -3.08 16 26 C 0.16 4.42 6.31 85.63 0.54 4.96 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 2.20 8.14 -2.38 -0.02 2.19 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 31 H 0.09 2.46 7.61 -2.39 -0.02 2.44 16 32 H 0.02 1.07 8.11 -2.39 -0.02 1.05 16 33 H 0.02 0.89 6.91 -2.39 -0.02 0.87 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.08 2.99 7.16 -2.39 -0.02 2.97 16 36 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.11 2.41 8.10 -2.39 -0.02 2.39 16 39 H 0.13 2.46 8.05 -2.91 -0.02 2.44 16 40 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 42 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 43 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.14 2.36 8.05 -2.91 -0.02 2.34 16 45 H 0.10 2.73 6.95 -2.38 -0.02 2.72 16 46 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -68.22 385.22 0.44 -67.78 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.96 Total: 20.83 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.70 Total: -20.03 kcal Atomic # 7 Polarization: -129.72 SS G_CDS: -2.90 Total: -132.62 kcal Atomic # 8 Polarization: -90.11 SS G_CDS: -3.99 Total: -94.11 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 114.99 SS G_CDS: -0.35 Total: 114.65 kcal Total: -68.22 0.44 -67.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337166032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.272 kcal (2) G-P(sol) polarization free energy of solvation -68.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds