Wall clock time and date at job start Tue Mar 31 2020 20:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99901 * 2 1 4 4 N 1.46499 * 109.47108 * 125.00315 * 3 2 1 5 5 C 1.46502 * 120.00086 * 274.99521 * 4 3 2 6 6 C 1.50697 * 109.47191 * 277.92586 * 5 4 3 7 7 C 1.38236 * 120.00224 * 271.97480 * 6 5 4 8 8 C 1.38233 * 120.00261 * 179.76986 * 7 6 5 9 9 C 1.38234 * 119.99901 * 0.50070 * 8 7 6 10 10 C 1.38235 * 120.00014 * 359.75479 * 9 8 7 11 11 C 1.38233 * 119.99993 * 359.97438 * 10 9 8 12 12 S 1.65607 * 120.00313 * 94.99873 * 4 3 2 13 13 O 1.42097 * 106.40251 * 149.13674 * 12 4 3 14 14 O 1.42100 * 106.39794 * 16.22002 * 12 4 3 15 15 N 1.65594 * 107.21762 * 262.68028 * 12 4 3 16 16 C 1.46502 * 119.99912 * 265.58604 * 15 12 4 17 17 C 1.46499 * 120.00253 * 85.58685 * 15 12 4 18 18 H 1.08999 * 109.47053 * 353.69270 * 17 15 12 19 19 C 1.53009 * 109.47104 * 233.69894 * 17 15 12 20 20 C 1.50693 * 109.47381 * 113.69491 * 17 15 12 21 21 H 1.08007 * 119.99935 * 0.02562 * 20 17 15 22 22 C 1.37877 * 120.00403 * 179.97438 * 20 17 15 23 23 N 1.31512 * 120.00186 * 179.72160 * 22 20 17 24 24 Si 1.86802 * 119.99741 * 0.02562 * 22 20 17 25 25 H 1.48500 * 109.47111 * 269.72166 * 24 22 20 26 26 H 1.48501 * 109.47353 * 29.71730 * 24 22 20 27 27 H 1.48496 * 109.47368 * 149.71928 * 24 22 20 28 28 H 1.07995 * 119.99971 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99912 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00324 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47201 * 5.00012 * 3 2 1 32 32 H 1.09009 * 109.46837 * 245.00178 * 3 2 1 33 33 H 1.09007 * 109.46716 * 37.91939 * 5 4 3 34 34 H 1.08996 * 109.47363 * 157.92215 * 5 4 3 35 35 H 1.08001 * 119.99810 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.99803 * 180.23029 * 8 7 6 37 37 H 1.07998 * 120.00253 * 179.72769 * 9 8 7 38 38 H 1.08008 * 120.00256 * 179.97438 * 10 9 8 39 39 H 1.08007 * 119.99879 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.47227 * 270.00237 * 16 15 12 41 41 H 1.09007 * 109.46902 * 30.00115 * 16 15 12 42 42 H 1.08999 * 109.47174 * 150.00094 * 16 15 12 43 43 H 1.08993 * 109.46641 * 172.14353 * 19 17 15 44 44 H 1.09003 * 109.46754 * 292.14206 * 19 17 15 45 45 H 1.08994 * 109.47105 * 52.14033 * 19 17 15 46 46 H 0.97003 * 119.99547 * 180.27633 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5312 3.2676 2.5200 7 6 3.6726 3.9397 2.9155 8 6 3.6765 5.3208 2.9730 9 6 2.5359 6.0295 2.6450 10 6 1.3928 5.3572 2.2546 11 6 1.3906 3.9763 2.1917 12 16 4.5713 0.8759 0.9173 13 8 5.3378 1.6365 1.8410 14 8 4.8061 0.8893 -0.4842 15 7 4.6942 -0.7043 1.3969 16 6 5.1128 -1.0244 2.7639 17 6 4.3845 -1.7822 0.4544 18 1 3.9876 -1.3562 -0.4670 19 6 3.3438 -2.7176 1.0734 20 6 5.6394 -2.5587 0.1491 21 1 6.5742 -2.2776 0.6114 22 6 5.5940 -3.6285 -0.7194 23 7 6.6903 -4.3027 -0.9900 24 14 3.9771 -4.1150 -1.5183 25 1 3.2805 -5.1078 -0.6613 26 1 3.1216 -2.9117 -1.6772 27 1 4.2436 -4.7124 -2.8514 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9315 33 1 1.5166 1.3928 2.6191 34 1 3.1922 1.3628 3.2191 35 1 4.5623 3.3858 3.1763 36 1 4.5695 5.8460 3.2784 37 1 2.5376 7.1084 2.6942 38 1 0.5015 5.9109 1.9987 39 1 0.4974 3.4511 1.8870 40 1 6.1980 -1.1197 2.7987 41 1 4.7963 -0.2273 3.4368 42 1 4.6553 -1.9641 3.0733 43 1 3.0103 -3.4361 0.3248 44 1 3.7880 -3.2493 1.9149 45 1 2.4918 -2.1336 1.4215 46 1 6.6590 -5.0529 -1.6042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337881222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:30 Heat of formation + Delta-G solvation = -12.150222 kcal Electronic energy + Delta-G solvation = -28963.734781 eV Core-core repulsion = 25174.476905 eV Total energy + Delta-G solvation = -3789.257877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.42154 -37.04241 -36.71146 -36.43214 -35.31263 -33.49073 -32.51554 -31.07735 -30.92320 -30.06711 -27.02914 -25.93635 -25.02836 -24.49145 -22.59869 -21.38473 -20.90326 -20.00771 -18.43353 -17.50788 -17.21286 -16.83273 -16.38604 -16.26040 -15.48199 -15.16696 -15.01499 -14.77408 -14.45508 -13.81709 -13.58287 -13.42578 -13.38145 -13.15745 -13.05200 -12.71824 -12.46729 -12.30767 -12.19867 -12.17947 -11.91955 -11.58754 -11.51366 -11.48054 -11.22314 -11.15407 -11.07728 -11.00502 -10.90961 -10.50285 -10.19786 -9.68406 -9.46619 -9.44287 -9.10541 -8.95875 -8.83779 -8.64607 -8.12410 -6.13703 -4.13983 0.91845 1.33342 1.36880 2.26971 3.19521 3.28552 3.33030 3.34271 3.75002 3.99530 4.32361 4.64771 4.69794 4.77936 4.89979 4.94189 4.97909 5.08172 5.15226 5.20889 5.38937 5.40227 5.46661 5.55703 5.63093 5.72060 5.90497 5.93872 5.94689 5.98132 6.08264 6.10387 6.21748 6.25480 6.38354 6.41918 6.45244 6.49340 6.52642 6.61242 6.65104 6.75718 6.83316 6.96651 7.24963 7.38186 7.60397 8.45878 8.91029 9.45989 10.99614 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.004195 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.256537 B = 6673.590527 C = 7500.731749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.174 4.174 3 C 0.142 3.858 4 N -1.001 6.001 5 C 0.168 3.832 6 C -0.107 4.107 7 C -0.099 4.099 8 C -0.124 4.124 9 C -0.120 4.120 10 C -0.129 4.129 11 C -0.106 4.106 12 S 2.776 3.224 13 O -0.984 6.984 14 O -0.968 6.968 15 N -0.984 5.984 16 C 0.107 3.893 17 C 0.245 3.755 18 H 0.051 0.949 19 C -0.166 4.166 20 C -0.522 4.522 21 H 0.081 0.919 22 C 0.075 3.925 23 N -0.894 5.894 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.265 1.265 27 H -0.293 1.293 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.141 0.859 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.998 14.558 8.429 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.193 4.193 3 C 0.017 3.983 4 N -0.836 5.836 5 C 0.042 3.958 6 C -0.109 4.109 7 C -0.117 4.117 8 C -0.143 4.143 9 C -0.139 4.139 10 C -0.147 4.147 11 C -0.125 4.125 12 S 2.786 3.214 13 O -0.968 6.968 14 O -0.952 6.952 15 N -0.826 5.826 16 C -0.039 4.039 17 C 0.140 3.860 18 H 0.068 0.932 19 C -0.225 4.225 20 C -0.561 4.561 21 H 0.099 0.901 22 C -0.128 4.128 23 N -0.531 5.531 24 Si 0.710 3.290 25 H -0.204 1.204 26 H -0.190 1.190 27 H -0.220 1.220 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.159 0.841 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.190 14.949 7.987 21.476 hybrid contribution -1.129 -0.751 -0.389 1.410 sum -14.318 14.198 7.598 21.549 Atomic orbital electron populations 1.23765 0.95586 1.01637 1.01336 1.23715 0.96723 0.99841 0.99030 1.20448 0.92969 0.95349 0.89523 1.58310 1.29853 1.80588 1.14895 1.20074 1.01961 0.89850 0.83911 1.20300 0.94183 0.96306 1.00073 1.21504 0.98349 0.94555 0.97310 1.21206 0.98211 0.94386 1.00446 1.21165 0.93418 0.99693 0.99597 1.21091 0.98269 0.94407 1.00941 1.21038 0.97758 0.94117 0.99545 1.02174 0.72802 0.72974 0.73446 1.93515 1.67966 1.69852 1.65494 1.93595 1.83502 1.86734 1.31340 1.57519 1.81393 1.23359 1.20303 1.21230 1.00579 1.00944 0.81174 1.19003 0.95325 0.84983 0.86679 0.93188 1.22563 0.98405 1.00031 1.01454 1.21183 0.94529 1.13017 1.27387 0.90095 1.24894 0.96235 0.95914 0.95789 1.69874 1.27277 1.20475 1.35505 0.86983 0.84330 0.79113 0.78577 1.20390 1.19014 1.22007 0.88459 0.88731 0.86223 0.90015 0.88089 0.89743 0.89458 0.84147 0.86077 0.86389 0.86332 0.86265 0.92746 0.92951 0.90958 0.93442 0.91864 0.94316 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.98 14.32 29.02 0.42 -1.56 16 2 C -0.17 -2.30 9.84 -36.03 -0.35 -2.65 16 3 C 0.14 1.89 6.07 -5.19 -0.03 1.86 16 4 N -1.00 -14.39 2.82 -116.95 -0.33 -14.72 16 5 C 0.17 1.97 5.51 -5.19 -0.03 1.94 16 6 C -0.11 -1.28 5.43 -104.62 -0.57 -1.85 16 7 C -0.10 -1.27 9.33 -39.58 -0.37 -1.64 16 8 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 9 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 10 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 11 C -0.11 -1.10 9.24 -39.58 -0.37 -1.46 16 12 S 2.78 52.37 5.95 -107.50 -0.64 51.73 16 13 O -0.98 -18.86 14.39 -57.17 -0.82 -19.69 16 14 O -0.97 -21.98 15.37 -57.17 -0.88 -22.86 16 15 N -0.98 -19.23 3.12 -115.85 -0.36 -19.59 16 16 C 0.11 1.78 9.82 59.85 0.59 2.37 16 17 C 0.24 5.51 1.74 -69.08 -0.12 5.39 16 18 H 0.05 1.19 5.74 -51.93 -0.30 0.89 16 19 C -0.17 -3.24 7.49 37.16 0.28 -2.96 16 20 C -0.52 -14.31 9.05 -34.44 -0.31 -14.63 16 21 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 22 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 23 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 24 Si 0.88 21.12 24.30 -169.99 -4.13 16.99 16 25 H -0.28 -6.33 6.95 56.52 0.39 -5.93 16 26 H -0.26 -6.00 6.51 56.52 0.37 -5.63 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H 0.10 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.09 0.82 7.84 -52.49 -0.41 0.41 16 30 H 0.12 1.86 4.99 -52.49 -0.26 1.60 16 31 H 0.08 0.87 7.27 -51.93 -0.38 0.49 16 32 H 0.10 1.50 6.87 -51.92 -0.36 1.14 16 33 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 34 H 0.09 0.98 7.18 -51.93 -0.37 0.61 16 35 H 0.14 1.97 6.56 -52.49 -0.34 1.62 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 39 H 0.12 1.00 8.02 -52.48 -0.42 0.58 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.71 7.18 -51.93 -0.37 0.33 16 42 H 0.07 1.12 6.30 -51.93 -0.33 0.80 16 43 H 0.05 0.97 3.53 -51.93 -0.18 0.79 16 44 H 0.06 1.20 6.88 -51.93 -0.36 0.85 16 45 H 0.04 0.62 6.92 -51.93 -0.36 0.27 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -32.97 373.99 -9.49 -42.46 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.58 Total: 4.41 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.16 Total: -18.24 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.08 Total: -60.44 kcal Atomic # 8 Polarization: -40.84 SS G_CDS: -1.70 Total: -42.54 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.13 Total: 16.99 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.64 Total: 51.73 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.97 -9.49 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337881222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.307 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds