Wall clock time and date at job start Tue Mar 31 2020 20:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 119.99901 * 2 1 4 4 N 1.46499 * 109.47108 * 125.00315 * 3 2 1 5 5 C 1.46502 * 120.00086 * 274.99521 * 4 3 2 6 6 C 1.50697 * 109.47191 * 277.92586 * 5 4 3 7 7 C 1.38236 * 120.00224 * 271.97480 * 6 5 4 8 8 C 1.38233 * 120.00261 * 179.76986 * 7 6 5 9 9 C 1.38234 * 119.99901 * 0.50070 * 8 7 6 10 10 C 1.38235 * 120.00014 * 359.75479 * 9 8 7 11 11 C 1.38233 * 119.99993 * 359.97438 * 10 9 8 12 12 S 1.65607 * 120.00313 * 94.99873 * 4 3 2 13 13 O 1.42097 * 106.40251 * 149.13674 * 12 4 3 14 14 O 1.42100 * 106.39794 * 16.22002 * 12 4 3 15 15 N 1.65594 * 107.21762 * 262.68028 * 12 4 3 16 16 C 1.46502 * 119.99912 * 265.58604 * 15 12 4 17 17 C 1.46499 * 120.00253 * 85.58685 * 15 12 4 18 18 H 1.08999 * 109.47053 * 353.69270 * 17 15 12 19 19 C 1.53009 * 109.47104 * 233.69894 * 17 15 12 20 20 C 1.50693 * 109.47381 * 113.69491 * 17 15 12 21 21 H 1.08007 * 119.99935 * 0.02562 * 20 17 15 22 22 C 1.37877 * 120.00403 * 179.97438 * 20 17 15 23 23 N 1.31512 * 120.00186 * 179.72160 * 22 20 17 24 24 Si 1.86802 * 119.99741 * 0.02562 * 22 20 17 25 25 H 1.48500 * 109.47111 * 269.72166 * 24 22 20 26 26 H 1.48501 * 109.47353 * 29.71730 * 24 22 20 27 27 H 1.48496 * 109.47368 * 149.71928 * 24 22 20 28 28 H 1.07995 * 119.99971 * 180.02562 * 1 2 3 29 29 H 1.08002 * 119.99912 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00324 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47201 * 5.00012 * 3 2 1 32 32 H 1.09009 * 109.46837 * 245.00178 * 3 2 1 33 33 H 1.09007 * 109.46716 * 37.91939 * 5 4 3 34 34 H 1.08996 * 109.47363 * 157.92215 * 5 4 3 35 35 H 1.08001 * 119.99810 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.99803 * 180.23029 * 8 7 6 37 37 H 1.07998 * 120.00253 * 179.72769 * 9 8 7 38 38 H 1.08008 * 120.00256 * 179.97438 * 10 9 8 39 39 H 1.08007 * 119.99879 * 179.97438 * 11 10 9 40 40 H 1.08999 * 109.47227 * 270.00237 * 16 15 12 41 41 H 1.09007 * 109.46902 * 30.00115 * 16 15 12 42 42 H 1.08999 * 109.47174 * 150.00094 * 16 15 12 43 43 H 1.08993 * 109.46641 * 172.14353 * 19 17 15 44 44 H 1.09003 * 109.46754 * 292.14206 * 19 17 15 45 45 H 1.08994 * 109.47105 * 52.14033 * 19 17 15 46 46 H 0.97003 * 119.99547 * 180.27633 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5285 1.7621 2.4523 6 6 2.5312 3.2676 2.5200 7 6 3.6726 3.9397 2.9155 8 6 3.6765 5.3208 2.9730 9 6 2.5359 6.0295 2.6450 10 6 1.3928 5.3572 2.2546 11 6 1.3906 3.9763 2.1917 12 16 4.5713 0.8759 0.9173 13 8 5.3378 1.6365 1.8410 14 8 4.8061 0.8893 -0.4842 15 7 4.6942 -0.7043 1.3969 16 6 5.1128 -1.0244 2.7639 17 6 4.3845 -1.7822 0.4544 18 1 3.9876 -1.3562 -0.4670 19 6 3.3438 -2.7176 1.0734 20 6 5.6394 -2.5587 0.1491 21 1 6.5742 -2.2776 0.6114 22 6 5.5940 -3.6285 -0.7194 23 7 6.6903 -4.3027 -0.9900 24 14 3.9771 -4.1150 -1.5183 25 1 3.2805 -5.1078 -0.6613 26 1 3.1216 -2.9117 -1.6772 27 1 4.2436 -4.7124 -2.8514 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9315 33 1 1.5166 1.3928 2.6191 34 1 3.1922 1.3628 3.2191 35 1 4.5623 3.3858 3.1763 36 1 4.5695 5.8460 3.2784 37 1 2.5376 7.1084 2.6942 38 1 0.5015 5.9109 1.9987 39 1 0.4974 3.4511 1.8870 40 1 6.1980 -1.1197 2.7987 41 1 4.7963 -0.2273 3.4368 42 1 4.6553 -1.9641 3.0733 43 1 3.0103 -3.4361 0.3248 44 1 3.7880 -3.2493 1.9149 45 1 2.4918 -2.1336 1.4215 46 1 6.6590 -5.0529 -1.6042 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337881222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:29 Heat of formation + Delta-G solvation = -34.410542 kcal Electronic energy + Delta-G solvation = -28964.700061 eV Core-core repulsion = 25174.476905 eV Total energy + Delta-G solvation = -3790.223157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.24383 -38.50945 -38.12225 -37.76617 -36.90284 -34.55171 -34.39080 -31.97606 -31.79348 -31.70605 -27.93389 -27.46418 -26.91048 -25.52193 -23.39421 -22.62634 -22.22482 -21.00648 -19.76993 -18.98749 -18.90285 -18.15006 -17.76741 -17.42424 -16.85549 -16.33501 -16.08690 -15.85901 -15.56455 -15.33226 -15.00172 -14.69365 -14.59038 -14.23915 -14.17026 -13.97813 -13.87299 -13.78784 -13.50253 -13.38194 -13.29118 -13.16526 -12.92747 -12.85620 -12.73771 -12.48467 -12.21807 -12.08625 -12.01555 -11.93321 -11.74884 -11.45768 -11.38072 -10.77235 -10.35211 -10.16497 -9.79149 -9.75557 -9.63025 -8.31066 -6.36285 -0.47429 0.46714 0.56295 1.28200 1.37069 1.37800 1.45177 2.03514 2.30584 2.50954 2.97289 3.03517 3.33482 3.67589 3.88133 3.98049 4.06718 4.11945 4.21006 4.27585 4.38503 4.40791 4.49504 4.58661 4.63386 4.68386 4.73915 4.76864 4.77880 4.83845 4.85598 4.98389 5.09073 5.10201 5.15599 5.20259 5.26024 5.39455 5.54369 5.58915 5.61992 5.68646 5.77074 5.79536 5.85085 5.95535 6.18198 6.32917 6.67574 7.28184 8.86314 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.004195 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.256537 B = 6673.590527 C = 7500.731749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.207 4.207 3 C 0.142 3.858 4 N -0.988 5.988 5 C 0.163 3.837 6 C -0.120 4.120 7 C -0.126 4.126 8 C -0.140 4.140 9 C -0.123 4.123 10 C -0.129 4.129 11 C -0.105 4.105 12 S 2.784 3.216 13 O -0.996 6.996 14 O -1.015 7.015 15 N -0.992 5.992 16 C 0.101 3.899 17 C 0.251 3.749 18 H 0.039 0.961 19 C -0.157 4.157 20 C -0.529 4.529 21 H 0.033 0.967 22 C 0.014 3.986 23 N -0.947 5.947 24 Si 0.940 3.060 25 H -0.251 1.251 26 H -0.244 1.244 27 H -0.299 1.299 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.054 15.923 9.190 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.227 4.227 3 C 0.017 3.983 4 N -0.827 5.827 5 C 0.039 3.961 6 C -0.122 4.122 7 C -0.145 4.145 8 C -0.158 4.158 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.124 4.124 12 S 2.795 3.205 13 O -0.980 6.980 14 O -0.999 6.999 15 N -0.833 5.833 16 C -0.044 4.044 17 C 0.145 3.855 18 H 0.057 0.943 19 C -0.216 4.216 20 C -0.568 4.568 21 H 0.052 0.948 22 C -0.184 4.184 23 N -0.587 5.587 24 Si 0.766 3.234 25 H -0.176 1.176 26 H -0.168 1.168 27 H -0.227 1.227 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.112 0.888 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.049 0.951 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.240 16.327 8.785 26.009 hybrid contribution 0.466 -1.006 -0.560 1.242 sum -17.775 15.321 8.226 24.866 Atomic orbital electron populations 1.24031 0.94482 1.03409 0.96925 1.23484 0.97596 0.98453 1.03131 1.20577 0.92784 0.97042 0.87871 1.57906 1.28217 1.79919 1.16630 1.20350 1.03524 0.90059 0.82159 1.20358 0.94579 0.96348 1.00872 1.21504 0.98360 0.95422 0.99221 1.21406 0.99418 0.94049 1.00939 1.21499 0.92987 1.00997 0.98643 1.21498 0.99024 0.94514 0.99673 1.21350 0.97883 0.94573 0.98590 1.01682 0.73953 0.72746 0.72166 1.93500 1.69294 1.69828 1.65331 1.93527 1.84922 1.87245 1.34197 1.57475 1.82092 1.22957 1.20750 1.21407 0.99427 1.03033 0.80558 1.18732 0.93676 0.85562 0.87529 0.94317 1.22401 0.98609 0.99485 1.01081 1.21520 0.95141 1.13423 1.26763 0.94833 1.25818 1.00185 0.95941 0.96467 1.70046 1.30098 1.21572 1.36944 0.86003 0.80057 0.79999 0.77349 1.17581 1.16754 1.22708 0.87526 0.85968 0.88763 0.86625 0.90633 0.86492 0.89522 0.86426 0.85416 0.84078 0.83465 0.83555 0.95055 0.89567 0.89587 0.93921 0.91672 0.90373 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 14.32 67.78 0.97 -1.46 16 2 C -0.21 -4.78 9.84 25.65 0.25 -4.53 16 3 C 0.14 3.43 6.07 85.63 0.52 3.95 16 4 N -0.99 -26.84 2.82 -523.91 -1.48 -28.32 16 5 C 0.16 3.41 5.51 85.63 0.47 3.88 16 6 C -0.12 -2.60 5.43 -19.87 -0.11 -2.71 16 7 C -0.13 -3.21 9.33 22.27 0.21 -3.00 16 8 C -0.14 -3.04 10.05 22.27 0.22 -2.82 16 9 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 10 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 11 C -0.11 -1.76 9.24 22.27 0.21 -1.55 16 12 S 2.78 106.94 5.95 -56.49 -0.34 106.60 16 13 O -1.00 -39.34 14.39 -128.00 -1.84 -41.19 16 14 O -1.01 -48.02 15.37 -128.00 -1.97 -49.99 16 15 N -0.99 -39.28 3.12 -520.43 -1.62 -40.91 16 16 C 0.10 3.40 9.82 127.77 1.25 4.65 16 17 C 0.25 11.36 1.74 44.25 0.08 11.43 16 18 H 0.04 1.86 5.74 -2.39 -0.01 1.85 16 19 C -0.16 -5.82 7.49 71.99 0.54 -5.28 16 20 C -0.53 -30.30 9.05 25.60 0.23 -30.07 16 21 H 0.03 2.17 8.06 -2.91 -0.02 2.14 16 22 C 0.01 0.80 5.45 84.65 0.46 1.27 16 23 N -0.95 -59.58 13.96 21.45 0.30 -59.28 16 24 Si 0.94 43.49 24.30 68.60 1.67 45.15 16 25 H -0.25 -10.49 6.95 99.48 0.69 -9.80 16 26 H -0.24 -10.34 6.51 99.48 0.65 -9.69 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 29 H 0.12 1.32 7.84 -2.91 -0.02 1.29 16 30 H 0.09 2.69 4.99 -2.91 -0.01 2.67 16 31 H 0.12 1.96 7.27 -2.39 -0.02 1.95 16 32 H 0.08 2.21 6.87 -2.38 -0.02 2.20 16 33 H 0.12 1.70 8.06 -2.38 -0.02 1.68 16 34 H 0.09 1.80 7.18 -2.39 -0.02 1.78 16 35 H 0.12 3.44 6.56 -2.91 -0.02 3.42 16 36 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.15 1.60 8.02 -2.91 -0.02 1.57 16 40 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 2.27 7.18 -2.38 -0.02 2.25 16 42 H 0.09 2.62 6.30 -2.39 -0.02 2.60 16 43 H 0.04 1.62 3.53 -2.39 -0.01 1.61 16 44 H 0.06 2.36 6.88 -2.39 -0.02 2.35 16 45 H 0.08 2.27 6.92 -2.39 -0.02 2.26 16 46 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -77.39 373.99 1.38 -76.01 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.90 Total: 21.85 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 5.76 Total: -29.93 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -2.80 Total: -128.51 kcal Atomic # 8 Polarization: -87.37 SS G_CDS: -3.81 Total: -91.18 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.67 Total: 45.15 kcal Atomic # 16 Polarization: 106.94 SS G_CDS: -0.34 Total: 106.60 kcal Total: -77.39 1.38 -76.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337881222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.599 kcal (2) G-P(sol) polarization free energy of solvation -77.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds