Wall clock time and date at job start Tue Mar 31 2020 20:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47133 * 2 1 4 4 C 1.50708 * 109.47051 * 240.00122 * 2 1 3 5 5 H 1.07990 * 119.99906 * 239.99757 * 4 2 1 6 6 C 1.37876 * 119.99663 * 60.00286 * 4 2 1 7 7 N 1.31513 * 120.00055 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99869 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47395 * 89.99670 * 8 6 4 10 10 H 1.48501 * 109.47264 * 209.99931 * 8 6 4 11 11 H 1.48504 * 109.47080 * 329.99582 * 8 6 4 12 12 N 1.46502 * 109.47200 * 120.00661 * 2 1 3 13 13 C 1.46495 * 120.00205 * 59.99782 * 12 2 1 14 14 S 1.65600 * 119.99681 * 240.00067 * 12 2 1 15 15 O 1.42104 * 106.40176 * 336.45831 * 14 12 2 16 16 O 1.42097 * 106.39936 * 203.53658 * 14 12 2 17 17 N 1.65598 * 107.21794 * 89.99686 * 14 12 2 18 18 C 1.46509 * 120.00114 * 65.00196 * 17 14 12 19 19 H 1.08997 * 115.55411 * 0.68382 * 18 17 14 20 20 C 1.52999 * 117.49792 * 146.37613 * 18 17 14 21 21 C 1.52998 * 117.49431 * 214.99976 * 18 17 14 22 22 H 1.08993 * 117.52238 * 359.97438 * 21 18 17 23 23 C 1.53001 * 117.49490 * 145.01883 * 21 18 17 24 24 C 1.50701 * 109.47159 * 185.01039 * 23 21 18 25 25 C 1.38232 * 119.99865 * 269.86554 * 24 23 21 26 26 C 1.38243 * 120.00069 * 179.97438 * 25 24 23 27 27 C 1.38235 * 119.99602 * 0.09581 * 26 25 24 28 28 C 1.38230 * 120.00326 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00279 * 90.00088 * 24 23 21 30 30 H 1.08994 * 109.47425 * 299.99772 * 1 2 3 31 31 H 1.09005 * 109.47284 * 60.00033 * 1 2 3 32 32 H 1.09001 * 109.47473 * 179.97438 * 1 2 3 33 33 H 0.97006 * 119.99908 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47457 * 270.00220 * 13 12 2 35 35 H 1.08998 * 109.47160 * 29.99765 * 13 12 2 36 36 H 1.09000 * 109.47370 * 150.00462 * 13 12 2 37 37 H 0.96997 * 120.00117 * 244.99860 * 17 14 12 38 38 H 1.08994 * 117.50284 * 359.97438 * 20 18 17 39 39 H 1.08994 * 117.51313 * 214.96678 * 20 18 17 40 40 H 1.09000 * 109.47043 * 65.00946 * 23 21 18 41 41 H 1.08996 * 109.47492 * 305.01039 * 23 21 18 42 42 H 1.08001 * 120.00365 * 0.08909 * 25 24 23 43 43 H 1.08000 * 119.99728 * 180.36512 * 26 25 24 44 44 H 1.08000 * 119.99297 * 179.97438 * 27 26 25 45 45 H 1.08001 * 120.00350 * 179.97438 * 28 27 26 46 46 H 1.08008 * 119.99453 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4872 -0.1399 -5.1121 11 1 3.6308 -1.7564 -3.7121 12 7 2.0183 -0.6908 1.1961 13 6 1.6644 -2.0933 1.4278 14 16 2.9704 0.1140 2.2862 15 8 3.5794 1.1829 1.5748 16 8 3.7117 -0.8791 2.9813 17 7 1.9607 0.8088 3.3998 18 6 1.1509 -0.0356 4.2817 19 1 1.2782 -1.1101 4.1509 20 6 0.8809 0.4768 5.6979 21 6 -0.2429 0.4701 4.6595 22 1 -0.5575 1.4309 4.2524 23 6 -1.3513 -0.5715 4.8249 24 6 -2.6636 0.1266 5.0733 25 6 -3.0607 0.4122 6.3662 26 6 -4.2642 1.0530 6.5940 27 6 -5.0715 1.4064 5.5290 28 6 -4.6751 1.1195 4.2362 29 6 -3.4716 0.4788 4.0084 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7081 1.1610 -3.4844 34 1 0.7375 -2.1446 1.9992 35 1 1.5294 -2.5969 0.4706 36 1 2.4628 -2.5820 1.9862 37 1 1.9054 1.7748 3.4682 38 1 1.3060 1.4418 5.9736 39 1 0.8302 -0.2605 6.4990 40 1 -1.1184 -1.2188 5.6704 41 1 -1.4248 -1.1712 3.9177 42 1 -2.4298 0.1363 7.1983 43 1 -4.5716 1.2814 7.6038 44 1 -6.0119 1.9067 5.7071 45 1 -5.3060 1.3952 3.4041 46 1 -3.1621 0.2540 2.9983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337970053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:39 Heat of formation + Delta-G solvation = -51.800357 kcal Electronic energy + Delta-G solvation = -27654.375172 eV Core-core repulsion = 23863.397936 eV Total energy + Delta-G solvation = -3790.977236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.28125 -38.90475 -38.27822 -37.85170 -36.89773 -34.51326 -34.31252 -32.28164 -31.68499 -30.90430 -27.75256 -27.22428 -26.97529 -23.43984 -23.04294 -22.61738 -22.60518 -21.35742 -20.30171 -18.87409 -18.57572 -18.11674 -17.75890 -17.29094 -16.86099 -16.18401 -15.97784 -15.81155 -15.35384 -15.15568 -14.87949 -14.43402 -14.31360 -14.14357 -13.92271 -13.77795 -13.58607 -13.46613 -13.22616 -13.13433 -13.09231 -13.00552 -12.94944 -12.83318 -12.68387 -12.60469 -12.28185 -12.22311 -12.11771 -11.93065 -11.82954 -11.79068 -11.15227 -10.92542 -10.49531 -9.97744 -9.74799 -9.63340 -9.45919 -8.11103 -6.24454 -0.32988 0.52215 0.57435 1.42208 1.44529 1.53736 2.00470 2.43465 2.61694 2.90000 2.97102 3.17334 3.42610 3.72776 3.90018 4.01906 4.07368 4.12682 4.16819 4.23735 4.27698 4.36789 4.54555 4.69722 4.72217 4.77270 4.79148 4.92404 4.97477 4.99111 5.03047 5.05732 5.17295 5.22730 5.26910 5.28744 5.32634 5.42504 5.62318 5.65866 5.69798 5.70241 5.82369 5.88723 6.03857 6.19817 6.21029 6.31370 6.83353 7.44335 8.92919 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012104 B = 0.003451 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.751083 B = 8112.532335 C = 9772.438423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.275 3.725 3 H 0.022 0.978 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.993 5.993 13 C 0.090 3.910 14 S 2.799 3.201 15 O -1.019 7.019 16 O -1.006 7.006 17 N -1.091 6.091 18 C 0.071 3.929 19 H 0.138 0.862 20 C -0.164 4.164 21 C -0.145 4.145 22 H 0.097 0.903 23 C -0.049 4.049 24 C -0.084 4.084 25 C -0.122 4.122 26 C -0.127 4.127 27 C -0.136 4.136 28 C -0.133 4.133 29 C -0.136 4.136 30 H 0.033 0.967 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.420 0.580 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.128 0.872 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 -1.911 19.789 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.171 3.829 3 H 0.040 0.960 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.835 5.835 13 C -0.056 4.056 14 S 2.808 3.192 15 O -1.003 7.003 16 O -0.990 6.990 17 N -0.849 5.849 18 C -0.037 4.037 19 H 0.156 0.844 20 C -0.203 4.203 21 C -0.166 4.166 22 H 0.115 0.885 23 C -0.087 4.087 24 C -0.084 4.084 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.154 4.154 28 C -0.151 4.151 29 C -0.154 4.154 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.254 0.746 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.146 0.854 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.856 -1.957 19.615 22.039 hybrid contribution -0.067 0.437 -1.385 1.454 sum -9.923 -1.521 18.230 20.811 Atomic orbital electron populations 1.21855 0.96745 1.00114 1.00200 1.18359 0.92238 0.91193 0.81110 0.96032 1.21673 1.31599 1.13058 0.91481 0.92386 1.25629 0.95251 0.95701 1.01645 1.69982 1.37322 1.23674 1.24281 0.85608 0.78795 0.78422 0.79105 1.19441 1.21069 1.19960 1.57489 1.69850 1.21092 1.35097 1.21522 1.00651 0.80632 1.02785 1.01130 0.73537 0.72319 0.72231 1.93555 1.75936 1.57580 1.73262 1.93510 1.69844 1.61117 1.74499 1.55402 1.60869 1.17415 1.51238 1.21657 0.94084 0.94592 0.93381 0.84421 1.23696 1.00447 1.04103 0.92082 1.22738 0.89243 1.00807 1.03766 0.88486 1.20226 0.89292 0.95685 1.03470 1.19962 0.96056 0.98886 0.93491 1.21315 0.96984 0.99134 0.96521 1.21463 0.94681 0.98475 0.99898 1.21427 1.00729 1.00556 0.92658 1.21390 0.96780 0.99017 0.97907 1.21297 0.95248 0.99647 0.99169 0.94810 0.91811 0.93942 0.92703 0.91190 0.91020 0.90862 0.74555 0.88017 0.85663 0.88617 0.90518 0.84323 0.84133 0.84562 0.85396 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.97 71.98 0.65 -5.10 16 2 C 0.28 13.44 2.62 44.25 0.12 13.56 16 3 H 0.02 1.22 6.91 -2.39 -0.02 1.20 16 4 C -0.54 -29.04 7.99 25.60 0.20 -28.83 16 5 H 0.06 3.10 7.33 -2.92 -0.02 3.08 16 6 C 0.02 0.96 5.30 84.65 0.45 1.40 16 7 N -0.91 -51.33 11.32 21.45 0.24 -51.09 16 8 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 N -0.99 -39.88 3.12 -520.45 -1.62 -41.50 16 13 C 0.09 2.95 9.65 127.77 1.23 4.18 16 14 S 2.80 107.63 6.12 -56.49 -0.35 107.28 16 15 O -1.02 -48.50 16.70 -128.00 -2.14 -50.64 16 16 O -1.01 -40.25 16.49 -128.00 -2.11 -42.36 16 17 N -1.09 -30.80 6.10 -169.38 -1.03 -31.83 16 18 C 0.07 1.57 6.21 44.99 0.28 1.85 16 19 H 0.14 2.91 8.10 -2.39 -0.02 2.89 16 20 C -0.16 -2.67 10.10 30.60 0.31 -2.36 16 21 C -0.14 -2.73 5.65 -10.79 -0.06 -2.79 16 22 H 0.10 2.10 8.07 -2.39 -0.02 2.09 16 23 C -0.05 -0.83 5.63 29.85 0.17 -0.66 16 24 C -0.08 -1.57 5.09 -19.87 -0.10 -1.67 16 25 C -0.12 -1.96 9.70 22.27 0.22 -1.75 16 26 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 27 C -0.14 -2.24 10.05 22.27 0.22 -2.02 16 28 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 29 C -0.14 -2.85 9.70 22.27 0.22 -2.64 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 3.21 6.07 -2.38 -0.01 3.19 16 32 H 0.04 1.75 7.67 -2.39 -0.02 1.73 16 33 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.54 7.02 -2.39 -0.02 2.52 16 36 H 0.07 2.24 7.02 -2.39 -0.02 2.22 16 37 H 0.42 10.64 8.96 -96.75 -0.87 9.77 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.13 1.48 8.03 -2.39 -0.02 1.46 16 40 H 0.10 1.20 7.82 -2.39 -0.02 1.18 16 41 H 0.08 1.37 8.09 -2.39 -0.02 1.35 16 42 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 44 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 45 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 46 H 0.12 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -69.95 391.57 -0.53 -70.47 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.11 Total: 25.26 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 4.35 Total: -30.89 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -2.41 Total: -124.42 kcal Atomic # 8 Polarization: -88.76 SS G_CDS: -4.25 Total: -93.01 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 107.63 SS G_CDS: -0.35 Total: 107.28 kcal Total: -69.95 -0.53 -70.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337970053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.674 kcal (2) G-P(sol) polarization free energy of solvation -69.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds